ID: uc002wcj.1_intron_2_0_chr2_242741452_f.5p
GENE: GAL3ST2(3)
chr2:242741402-242741651+


(1)
AGO2.ip
(11)
B-CELL
(2)
BRAIN
(3)
BREAST
(20)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(5)
HEART
(3)
LIVER
(1)
OTHER
(19)
SKIN
(1)
UTERUS

Sense strand
AGCAGCGCTTCAACATCATGTGCAACCACCTGAGGTTCAACCTGCCTCAGGTACCGCGGGCCTGCTGGGGAGGAGGGCGGGCTGCAGCCGTGCCTGTGGCTGTGGGTCTGGGTGGTGTAGCCTGGAGGCTGGAGAGAAGGAGTGTAAGGCTTGGGGGCGGGGCGTGCAGAAGGCGGGTTGGGAGGGCCTGGGCCGCACGCCCTGCTGAGCCAACCCCTGCCCCTCCAGGCGGCCAGTCGCCTGCCGTTGC
.....................................................((((...(((.((....)).))))))).(((((((((......))))))))).((..(((......)))..))............................................................................................................................
..................................................51...........................................................................128........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR343334SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR343335SRR189784SRR189787SRR189785SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
GSM532876(GSM532876)
G547T. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189783SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040006(GSM532891)
G601N. (cervix)
SRR189786TAX577589(Rovira)
total RNA. (breast)
SRR038863(GSM458546)
MM603. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
TAX577745(Rovira)
total RNA. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR553574(SRX182780)
source: Heart. (Heart)
.........................................................................................................GTCTGGGTGGTGTAG..................................................................................................................................15322.6722.67-4.673.00-3.001.00--0.33----0.67-1.331.33-0.67--------0.67------1.00----------0.330.670.33-----0.33----0.33--0.33-0.33-0.330.330.33--0.33-0.330.33-0.33
.........................................................................................................GTCTGGGTGGTGTAGTTGG..............................................................................................................................1939.6722.67--0.67--1.00-0.672.00-----1.00----1.00---0.67-----------------------0.33-0.330.67-----0.33--0.33----0.33----0.33------
....................................................................GGAGGAGGGCGGGCTGGGA...................................................................................................................................................................199.000.009.00---------------------------------------------------------------------------
.........................................................................................................GTCTGGGTGGTGTAGTCGG..............................................................................................................................1936.0022.67--0.33----0.33----1.00-----0.67----0.33---------------------0.33--0.670.33-0.67--0.330.33-0.33----------------0.33-
..........................................................................................................................................................................................CCTGGGCCGCACGCCCGC..............................................184.000.00---3.00---------1.00--------------------------------------------------------------
.........................................................................................................GTCTGGGTGGTGTAGT.................................................................................................................................1633.3322.67----0.330.33-------0.33-0.33--0.33-------------------------0.67---------------0.33-0.33-----0.33-------
.........................................................................................................GTCTGGGTGGTGTAGTTG...............................................................................................................................1832.6722.67--0.33----0.67------0.67--0.67-0.33--------------------------------------------------------
..........................................................................GGGCGGGCTGCAGCCGGCGG............................................................................................................................................................202.000.00----------2.00-----------------------------------------------------------------
.........................................................................................................GTCTGGGTGGTGTAGA.................................................................................................................................1632.0022.67-1.330.33-------------0.33-----------------------------------------------------------
.........................................................................................................GTCTGGGTGGTGTAGTC................................................................................................................................1731.3322.67--0.67------------------------0.33-------------------------------------------0.33----
.....................................................................GAGGAGGGCGGGCTGAGGA..................................................................................................................................................................191.000.00-------------------------------------1.00--------------------------------------
....................................................................GGAGGAGGGCGGGCTGGGTA..................................................................................................................................................................201.000.00-------------------------------------------1.00--------------------------------
.....................................................................................................................................................................................GAGGGCCTGGGCCGCAAG...................................................181.000.00---------------------1.00------------------------------------------------------
...........................................................GCCTGCTGGGGAGGAACC.............................................................................................................................................................................181.000.00--------------------------------1.00-------------------------------------------
.............................................................................................................................AGGCTGGAGAGAAGGGACC..........................................................................................................191.000.00---------------------------------1.00------------------------------------------
...................................................................................................................................GAGAGAAGGAGTGTAAAAA....................................................................................................191.000.00-----------1.00----------------------------------------------------------------
................................................................CTGGGGAGGAGGGCGGGCTGC.....................................................................................................................................................................2111.001.00----------------------1.00-----------------------------------------------------
.............................................................................................................................AGGCTGGAGAGAAGGGGCG..........................................................................................................191.000.00-------------------------------1.00--------------------------------------------
.........................................................................................................GTCTGGGTGGTGTAGAA................................................................................................................................1731.0022.67-1.00--------------------------------------------------------------------------
.........................................................................................................................................................................AAGGCGGGTTGGGAGGGCGA.............................................................201.000.00--------------------------1.00-------------------------------------------------
...........................................................................................................................................................................GGCGGGTTGGGAGGGGGA.............................................................181.000.00-----------------------------------1.00----------------------------------------
.........................................................................................................GTCTGGGTGGTGTAGTCG...............................................................................................................................1831.0022.67-------1.00--------------------------------------------------------------------
...............................................................................................GTGGCTGTGGGTCTGTGGG........................................................................................................................................191.000.00---------1.00------------------------------------------------------------------
...........................................................GCCTGCTGGGGAGGAACCT............................................................................................................................................................................191.000.00------------1.00---------------------------------------------------------------
....................................................................GGAGGAGGGCGGGCTGGCA...................................................................................................................................................................191.000.00-----------1.00----------------------------------------------------------------
..........................................................................................................................................................................................CCTGGGCCGCACGCCCG...............................................171.000.00---1.00------------------------------------------------------------------------
.............................................................................................................................AGGCTGGAGAGAAGGGACG..........................................................................................................191.000.00------------------------1.00---------------------------------------------------
...................................................................GGGAGGAGGGCGGGCGAA.....................................................................................................................................................................181.000.00------------------------------1.00---------------------------------------------
..........................................................................................................................TGGAGGCTGGAGAGAAAGTG............................................................................................................201.000.00-----------------1.00----------------------------------------------------------
.......................................................................................................GGGTCTGGGTGGTGTATGG................................................................................................................................191.000.00-------------------------1.00--------------------------------------------------
.........................................................................................................GTCTGGGTGGTGTAGC.................................................................................................................................1620.500.50----------------------------------------------------0.50-----------------------
.........................................................................................................GTCTGGGTGGTGTAGTT................................................................................................................................1730.3322.67-------0.33--------------------------------------------------------------------

Antisense strand
AGCAGCGCTTCAACATCATGTGCAACCACCTGAGGTTCAACCTGCCTCAGGTACCGCGGGCCTGCTGGGGAGGAGGGCGGGCTGCAGCCGTGCCTGTGGCTGTGGGTCTGGGTGGTGTAGCCTGGAGGCTGGAGAGAAGGAGTGTAAGGCTTGGGGGCGGGGCGTGCAGAAGGCGGGTTGGGAGGGCCTGGGCCGCACGCCCTGCTGAGCCAACCCCTGCCCCTCCAGGCGGCCAGTCGCCTGCCGTTGC
.....................................................((((...(((.((....)).))))))).(((((((((......))))))))).((..(((......)))..))............................................................................................................................
..................................................51...........................................................................128........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR343334SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR343335SRR189784SRR189787SRR189785SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
GSM532876(GSM532876)
G547T. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189783SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040006(GSM532891)
G601N. (cervix)
SRR189786TAX577589(Rovira)
total RNA. (breast)
SRR038863(GSM458546)
MM603. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
TAX577745(Rovira)
total RNA. (breast)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
SRR553574(SRX182780)
source: Heart. (Heart)
..................................GTTCAACCTGCCTCAAGTT..................................................................................................................................................................................................... 193.000.00------3.00---------------------------------------------------------------------
..................................................................................................GCTGTGGGTCTGGGTTAAG..................................................................................................................................... 192.000.00----1.00---------------1.00-------------------------------------------------------
........................................................................................................................................................................GAAGGCGGGTTGGGAACT................................................................ 181.000.00---------------------------------------1.00------------------------------------
...........................................................................GGCGGGCTGCAGCCGTGATT........................................................................................................................................................... 201.000.00------------------------------------------1.00---------------------------------
.................................................................................................................................................................................................CGCACGCCCTGCTGAGCTCG..................................... 201.000.00----------------------------1.00-----------------------------------------------
..................................GTTCAACCTGCCTCAGGGTT.................................................................................................................................................................................................... 201.000.00--------------------------------------1.00-------------------------------------
..................................GTTCAACCTGCCTCAA........................................................................................................................................................................................................ 161.000.00-----1.00----------------------------------------------------------------------
........TTCAACATCATGTGCCAGC............................................................................................................................................................................................................................... 191.000.00-----------------------------1.00----------------------------------------------
..........................................................................................................................................................................................................................GCCCCTCCAGGCGGCGGCG............. 191.000.00---1.00------------------------------------------------------------------------
..................................GTTCAACCTGCCTCAGACG..................................................................................................................................................................................................... 191.000.00---------1.00------------------------------------------------------------------
...........................................GCCTCAGGTACCGCGGTAAC........................................................................................................................................................................................... 201.000.00----------------------------------------1.00-----------------------------------
.................................................................TGGGGAGGAGGGCGGACC....................................................................................................................................................................... 181.000.00------------------------------------1.00---------------------------------------
..........................................................................................................CCAGGCTACACCACCCAGA............................................................................................................................. 1911.001.00-----------------------------------------1.00----------------------------------