ID: uc002wce.1_intron_8_0_chr2_242695430_f.5p
GENE: D2HGDH(9)
chr2:242695380-242695629+


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
B-CELL 		(6)
BREAST 		(12)
CELL-LINE 		(3)
CERVIX 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(30)
SKIN 		(1)
UTERUS

Sense strand
CGCCCGCCTCGGCCCGCACGCCAAGCACGTGGTGGGCTATGGCCACCTTGGTGAGCGGCGCCCCGGGGCCGCGGCCCTGTGTGTGCTGGGTGGTGGGCCCCACGGTCACCGTCACCCTGCCAGGCTTCGAGGCAGGGCAGTTTGACCATGGTCTCTGGCTTAGCATATCTCCCGTAGACACTGGCAGGACCACGGTGTCTGACAGGGAAGGGAAAATCCTAATCGTTGTCATGACTCGTTTTGAGTATTT
........................................................((.(((..((((((((.((((.((....)).)))).)))).))))..)))..)).....((((((((.((..((((((((.(((...(((....))).))).))).))....)))....))...))))))))..............................................................
........................................................57.....................................................................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR040040(GSM532925)
G612N. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM532871(GSM532871)
G652N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335
.............................................................CCCGGGGCCGCGGCCCGGGG.........................................................................................................................................................................207.000.004.003.00-------------------------------------------------------
...........................................................GCCCCGGGGCCGCGGTT..............................................................................................................................................................................177.000.00--3.00----1.00--------------1.00--1.001.00------------------------------
..............................................................CCGGGGCCGCGGCCCCGGG.........................................................................................................................................................................194.000.003.00----1.00---------------------------------------------------
...........................................................GCCCCGGGGCCGCGGT...............................................................................................................................................................................164.000.00--2.00--1.00-1.00-------------------------------------------------
...........................................................GCCCCGGGGCCGCGGTTC.............................................................................................................................................................................184.000.00--2.00-------2.00----------------------------------------------
............................................................CCCCGGGGCCGCGGCCGCG...........................................................................................................................................................................193.000.00--1.00-------------1.00-------------------------1.00--------------
............................................................CCCCGGGGCCGCGGCGCG............................................................................................................................................................................183.000.00-------------------1.001.00---------1.00--------------------------
............................................................................................................................................................................................ACCACGGTGTCTGACAGGGAAGG.......................................2313.003.00------3.00--------------------------------------------------
............................................................CCCCGGGGCCGCGGCT..............................................................................................................................................................................162.000.00-----------1.00--------------------------1.00------------------
......................................................................................................................................................................ATCTCCCGTAGACACTGGCAGG..............................................................2212.002.00---2.00-----------------------------------------------------
.......................................................................................................................................................................................................................ATCCTAATCGTTGTCATG.................1812.002.00---------------2.00-----------------------------------------
............................................................CCCCGGGGCCGCGGCGGCG...........................................................................................................................................................................192.000.00-----1.00------1.00--------------------------------------------
............................................................CCCCGGGGCCGCGGCTCC............................................................................................................................................................................182.000.00-----------1.00---------------------------1.00-----------------
.......................................................................................................................................................................TCTCCCGTAGACACTGGCAGG..............................................................2112.002.00--------------2.00------------------------------------------
......................................................................................................................................................GTCTCTGGCTTAGCATATCTCCCGT...........................................................................2511.001.00---1.00-----------------------------------------------------
............................................................CCCCGGGGCCGCGGCCGCGC..........................................................................................................................................................................201.000.00----------------------------1.00----------------------------
.................................................................................................................................AGGCAGGGCAGTTTGCT........................................................................................................171.000.00-----------------------------------1.00---------------------
...........................................................................................................................................................................................................AGGGAAGGGAAAATCGCAC............................191.000.00---------------------------------1.00-----------------------
.............................................................CCCGGGGCCGCGGCCGCG...........................................................................................................................................................................181.000.00-----------------------1.00---------------------------------
............................................................CCCCGGGGCCGCGGCGTC............................................................................................................................................................................181.000.00--------------------------------1.00------------------------
..........................................................CGCCCCGGGGCCGCGG................................................................................................................................................................................1651.001.000.40------0.20-----------0.20----------------------------------0.20--
............................................................CCCCGGGGCCGCGGCATGC...........................................................................................................................................................................191.000.00------------1.00--------------------------------------------
......................................................................................................................................................................ATCTCCCGTAGACACTGGCAGGG.............................................................2311.002.00---1.00-----------------------------------------------------
.........CGGCCCGCACGCCAAGCACGTGGTGG.......................................................................................................................................................................................................................2611.001.00------------------------1.00--------------------------------
...................................................................................................................................................ATGGTCTCTGGCTTACATC....................................................................................191.000.00-------------1.00-------------------------------------------
......................................................................................................................................................................ATCTCCCGTAGACACTGGCAGGA.............................................................2311.001.00-----------------------------------------1.00---------------
..............................................................CCGGGGCCGCGGCCCCCGG.........................................................................................................................................................................191.000.00---------------------------1.00-----------------------------
............................................................CCCCGGGGCCGCGGCTCCG...........................................................................................................................................................................191.000.00------------------------------------1.00--------------------
.......................................................................................................................................................................TCTCCCGTAGACACTGGCAGGA.............................................................2211.001.00----------------------------------------1.00----------------
............................................................CCCCGGGGCCGCGGCCCCAG..........................................................................................................................................................................2021.000.50----1.00----------------------------------------------------
............................................................................................................................................................................................ACCACGGTGTCTGACAGGGAAGA.......................................2311.001.00----------------------------------1.00----------------------
............................................................CCCCGGGGCCGCGGCCCC............................................................................................................................................................................1821.000.50-------------------------------1.00-------------------------
............................................................CCCCGGGGCCGCGGCATTA...........................................................................................................................................................................191.000.00------------------1.00--------------------------------------
............................................................CCCCGGGGCCGCGGCGCGC...........................................................................................................................................................................191.000.00----------------1.00----------------------------------------
............................................................CCCCGGGGCCGCGGCTGT............................................................................................................................................................................181.000.00----1.00----------------------------------------------------
............................................................................................................................................................................................ACCACGGTGTCTGACAGGGAAGGG......................................2411.001.00-------------------------------------------1.00-------------
.............................................................CCCGGGGCCGCGGCCCCCGG.........................................................................................................................................................................201.000.00-1.00-------------------------------------------------------
.......................................................................................................................................................................TCTCCCGTAGACACTGGCA................................................................1911.001.00---------1.00-----------------------------------------------
..............................................................CCGGGGCCGCGGCCCCGTG.........................................................................................................................................................................191.000.00-1.00-------------------------------------------------------
............................................................................................................................................................................................ACCACGGTGTCTGACAGGGAAG........................................2211.001.00---------------------1.00-----------------------------------
.............................................................CCCGGGGCCGCGGCCCCCGC.........................................................................................................................................................................201.000.00-1.00-------------------------------------------------------
............................................................CCCCGGGGCCGCGGCTG.............................................................................................................................................................................171.000.00----1.00----------------------------------------------------
...........................................................GCCCCGGGGCCGCGGCGCC............................................................................................................................................................................191.000.00--------1.00------------------------------------------------
.............................................................................................................................................................................................CCACGGTGTCTGACAGGGAAG........................................2111.001.00-----------------------------1.00---------------------------
............................................................CCCCGGGGCCGCGGCGCT............................................................................................................................................................................181.000.00--------1.00------------------------------------------------
.........................................................................................................................................................................................................ACAGGGAAGGGAAAAAGG...............................181.000.00-----------------1.00---------------------------------------
.......................................................................................................................................................................TCTCCCGTAGACACTGGCAGGG.............................................................2211.002.00---------1.00-----------------------------------------------
.................................................................................................................ACCCTGCCAGGCTTCTTGT......................................................................................................................191.000.00-------------1.00-------------------------------------------
..........................................................CGCCCCGGGGCCGCGGT...............................................................................................................................................................................1750.801.00--------------------0.20-------------------------0.20---0.200.20-----
..........................................................CGCCCCGGGGCCGCGGTT..............................................................................................................................................................................1850.601.00------------------------------------------------0.20---0.200.20---
............................................................CCCCGGGGCCGCGGCCC.............................................................................................................................................................................1720.500.50------------------0.50--------------------------------------
................................................................................................................................GAGGCAGGGCAGTTTGA.........................................................................................................1720.500.50--------------------------------------------0.50------------
..........................................................CGCCCCGGGGCCGCGGTTCC............................................................................................................................................................................2050.401.00-----------------------------------------------0.20-0.20-------
..........................................................CGCCCCGGGGCCGCGGTCC.............................................................................................................................................................................1950.201.00-----------------------------------------------0.20---------
..........................................................CGCCCCGGGGCCGCGGTTC.............................................................................................................................................................................1950.201.00----------------------------------------------0.20----------
..........................................................CGCCCCGGGGCCGCG.................................................................................................................................................................................1580.120.12-------------------------------------------------------0.12-
.......................................................CGGCGCCCCGGGGCC....................................................................................................................................................................................1580.120.12--------------------------------------------------------0.12

Antisense strand
CGCCCGCCTCGGCCCGCACGCCAAGCACGTGGTGGGCTATGGCCACCTTGGTGAGCGGCGCCCCGGGGCCGCGGCCCTGTGTGTGCTGGGTGGTGGGCCCCACGGTCACCGTCACCCTGCCAGGCTTCGAGGCAGGGCAGTTTGACCATGGTCTCTGGCTTAGCATATCTCCCGTAGACACTGGCAGGACCACGGTGTCTGACAGGGAAGGGAAAATCCTAATCGTTGTCATGACTCGTTTTGAGTATTT
........................................................((.(((..((((((((.((((.((....)).)))).)))).))))..)))..)).....((((((((.((..((((((((.(((...(((....))).))).))).))....)))....))...))))))))..............................................................
........................................................57.....................................................................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM532877(GSM532877)
G691N. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR040040(GSM532925)
G612N. (cervix)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM532871(GSM532871)
G652N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335
......................................................GCGGCGCCCCGGGGCCGCGA................................................................................................................................................................................ 201.000.00-1.00-------------------------------------------------------
......................................................GCGGCGCCCCGGGGCCGCGGCA.............................................................................................................................................................................. 221.000.00-1.00-------------------------------------------------------
.......................................................CGGCGCCCCGGGGCCGCGGC............................................................................................................................................................................... 201.000.001.00--------------------------------------------------------
..........................................................................................TGGTGGGCCCCACGGTT............................................................................................................................................... 171.000.00-----------------1.00---------------------------------------
.......................................................CGGCGCCCCGGGGCCGGC................................................................................................................................................................................. 1881.000.001.00--------------------------------------------------------
..........................................................................................TGGTGGGCCCCACGGTCAT............................................................................................................................................. 191.000.00-------------------------------------1.00-------------------
......................................................GCGGCGCCCCGGGGCCGCG................................................................................................................................................................................. 191.000.00-1.00-------------------------------------------------------
............................................................GGGCCGCGGCCCCGGGG............................................................................................................................................................................. 1720.500.50---------------------------------------------0.50-----------