ID: uc002vvo.1_intron_2_0_chr2_235796462_r.5p
GENE: AF279775(1)
chr2:235797093-235797342-


(7)
B-CELL 		(3)
BRAIN 		(11)
CELL-LINE 		(2)
CERVIX 		(5)
HEART 		(2)
LIVER 		(1)
OTHER 		(15)
SKIN 		(1)
TESTES 		(1)
UTERUS

Sense strand
AGCCCGTCGGAAAAGCGCAATATTCGGGTGGGAGTGACCCGATTTTCCAGGTGCGTCCGTCACCCCTTTCTTTGACTCGGAAAGGGAACTCCCTGACCCCTTGCGTTTCCGGAGTGAGGCAATGCCTCGCCCTGCTTCGGCTCGCGCACGGTGCGCGCACCCACTGGCCTGCGCCCACTGTCTGGCACTCCCTAGTGAGATGAACCCGGTACCTCAGATGGAAATGCAGAAATCACCGTCTTCTGCGTCG
................................................................(((((((.......)))))))......((.(((....(((((....((.(((((((...))))))))).((....))..))))).((.(((((..((....))..)))))))...))).)).................................................................
................................................................65.............................................................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................CTTTGACTCGGAAAGGGAACTCTG.............................................................................................................................................................2412.000.002.002.001.00----1.001.002.00---1.001.00-1.00-------------------------------
.......................................................................TTGACTCGGAAAGGGAACTCTG.............................................................................................................................................................2210.000.00-1.002.00--1.00-------1.00--1.00---1.00--1.00-------1.00-----------1.00----
...................ATATTCGGGTGGGAGTGACCTCTG...............................................................................................................................................................................................................248.000.00-1.00-6.00-----------------------------------------1.00--
....................................................................TCTTTGACTCGGAAAGGGAACTCTG.............................................................................................................................................................258.000.003.003.001.00--------------------------------------------1.00
......................................................................TTTGACTCGGAAAGGGAACTCTG.............................................................................................................................................................237.000.001.001.00---2.00--1.001.00--------------------1.00-----------------
.........................................................................GACTCGGAAAGGGAACTCTG.............................................................................................................................................................205.000.00--1.00--1.00-1.00------1.00------------1.00--------------------
........................................................................TGACTCGGAAAGGGAACTCTG.............................................................................................................................................................214.000.00--1.00----1.001.00----------1.00----------------------------
...................................................................TTCTTTGACTCGGAAAGGGAACTCTG.............................................................................................................................................................263.000.003.00-----------------------------------------------
....................................................................................................................................................................TGGCCTGCGCCCACTGTCTGGCAA..............................................................242.000.00----------2.00-------------------------------------
....................................................................................................................................................................TGGCCTGCGCCCACTGTCTGGCACCCCC..........................................................282.000.00-----------2.00------------------------------------
.......................................................................TTGACTCGGAAAGGGAACTCTT.............................................................................................................................................................221.000.00--1.00---------------------------------------------
................................................................................................................................................................................................TAGTGAGATGAACCCGGTATT.....................................211.000.00---------------1.00--------------------------------
.......................................................TCCGTCACCCCTTTCTCT.................................................................................................................................................................................181.000.00-------------------------1.00----------------------
.......................................................................TTGACTCGGAAAGGGAAAA................................................................................................................................................................191.000.00------------1.00-----------------------------------
...........................................................................................................................................................................................CTCCCTAGTGAGATGAACCCGG.........................................2201.001.00----1.00-------------------------------------------
........................................................................................................................................................................................................................GATGGAAATGCAGAAATATCA.............211.000.00---------------------1.00--------------------------
..................................................................TTTCTTTGACTCGGAAAGGGAACTCTG.............................................................................................................................................................271.000.00-1.00----------------------------------------------
...............................................................................................................................................................................................................GGTACCTCAGATGGAAATGCAGAAATCATA.............301.000.00---------------1.00--------------------------------
....................................................................................................................................................................TGGCCTGCGCCCACTGTATGG.................................................................211.000.00----------1.00-------------------------------------
......................................................................TTTGACTCGGAAAGGGAACTCCCTGAAA........................................................................................................................................................281.000.00------------1.00-----------------------------------
...........................................................................CTCGGAAAGGGAACTCCCTGACAA.......................................................................................................................................................241.000.00-------------------------------------1.00----------
..........................................................................................................................................................................GCGCCCACTGTCTGGGTG..............................................................181.000.00----------------------------------------------1.00-
.....................................CCCGATTTTCCAGGTGCGTCCGTAGGG..........................................................................................................................................................................................271.000.00----------------------------------------1.00-------
..............................................................CCCCTTTCTTTGACTCGGC.........................................................................................................................................................................191.000.00----------------------1.00-------------------------
..................................................................................................................................................................ACTGGCCTGCGCCCACTGTCTGGCACCCCC..........................................................301.000.00-----------1.00------------------------------------
.............................................................................................................................................................................................CCCTAGTGAGATGAACCCG..........................................1901.001.00----1.00-------------------------------------------
.............................................................................................................................................................................................CCCTAGTGAGATGAACCCGATC.......................................2201.001.00-----------------1.00------------------------------
......................................................................................................................................................................................................GATGAACCCGGTACCTCAGATGGAAATGC.......................2901.001.00----1.00-------------------------------------------
..........................................................................................................................................................................................................AACCCGGTACCTCAGATGGATT..........................221.000.00--------------------------------1.00---------------
.......................................................................................................................................................................................................ATGAACCCGGTACCTCAGA................................1901.001.00----------------------------------1.00-------------
................................................................................................................................................................................................TAGTGAGATGAACCCGGTAAA.....................................211.000.00---------------------------------------1.00--------
...................................................................................................................................................................................................TGAGATGAACCCGGTACCTCAGATGGAT...........................281.000.00------------1.00-----------------------------------
............................................................................TCGGAAAGGGAACTCCCTGAAA........................................................................................................................................................221.000.00--------------------------1.00---------------------
.....................ATTCGGGTGGGAGTGGTCT..................................................................................................................................................................................................................191.000.00----------------------------1.00-------------------

Antisense strand
AGCCCGTCGGAAAAGCGCAATATTCGGGTGGGAGTGACCCGATTTTCCAGGTGCGTCCGTCACCCCTTTCTTTGACTCGGAAAGGGAACTCCCTGACCCCTTGCGTTTCCGGAGTGAGGCAATGCCTCGCCCTGCTTCGGCTCGCGCACGGTGCGCGCACCCACTGGCCTGCGCCCACTGTCTGGCACTCCCTAGTGAGATGAACCCGGTACCTCAGATGGAAATGCAGAAATCACCGTCTTCTGCGTCG
................................................................(((((((.......)))))))......((.(((....(((((....((.(((((((...))))))))).((....))..))))).((.(((((..((....))..)))))))...))).)).................................................................
................................................................65.............................................................................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040029(GSM532914)
G026T. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................................................................................................ACTCCCTAGTGAGATGAACCCGAAAA...................................... 264.000.00------4.00-----------------------------------------
...................................................TGCGTCCGTCACCCCTTTCTTTA................................................................................................................................................................................ 232.000.00------------------2.00-----------------------------
..............................................................................................................................................................................................ACCGGGTTCATCTCACTAGG........................................ 2002.002.00----2.00-------------------------------------------
..............................................GGGTGACGGACGCACCTGG......................................................................................................................................................................................... 1901.001.00-----------------------------1.00------------------
............................................TTCCAGGTGCGTCCGGATC........................................................................................................................................................................................... 191.000.00---------------------------------1.00--------------
........................................................CCGTCACCCCTTTCTTTA................................................................................................................................................................................ 181.000.00------------------------------------------1.00-----
........................................GATTTTCCAGGTGCGTCCGTCAAA.......................................................................................................................................................................................... 241.000.00--------------------------------------1.00---------
...........................................................................................................................................................................................................ACCCGGTACCTCAGATGGAGG.......................... 211.000.00--1.00---------------------------------------------
.......................................................................................................................CAATGCCTCGCCCTGCTAA................................................................................................................ 191.000.00-----------------------------------------1.00------
.............................................................................................................................................................................................................................AAATGCAGAAATCACCGTCTTCTC..... 241.000.00-----------------1.00------------------------------
.......CGGAAAAGCGCAATAGGT................................................................................................................................................................................................................................. 181.000.00------------------------------------1.00-----------
.............................................TCCAGGTGCGTCCGTCAGA.......................................................................................................................................................................................... 191.000.00--------------------------------------------1.00---
...............................................................................................................................................................GACAGTGGGCGCAGGCCAGTGGG.................................................................... 2301.001.00------------------------1.00-----------------------
..................................................................................................................................................................................................................ACCTCAGATGGAAATGCAGAGG.................. 221.000.00-----------------------------------1.00------------