ID: uc002vru.2_intron_12_0_chr2_232328028_r.3p
GENE: (1)
chr2:232327978-232328227-


(8)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(15)
CELL-LINE 		(4)
HELA 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(11)
SKIN 		(2)
XRN.ip

Sense strand
CTGGGAGGAAAAATGTGGGCGGTTGAGAGTAGTCCCTCTTGCATTGCCATCAGGAGTAGTTTCTATGTTAGTTGTGGTGTTTGGCACTATGAGAAATGGATCTGAGGACGGAGATGATGGCGTATGAACACTAATGGCAAAATATGAATGGCCTGAAATGTCGAGGTGGAGGTGTAATGATCTATTTGTGTCCATTTTAGGCAGGTAAAAATCAAGGTGACCCCAAGAAAATGGCTCCTCCTCCAAAGGA
...............................................................................................................((((.((.(((......((((...(((...((....)).))).((....))..))))....))).)).))))...................................................................
.........................................................................................................106..............................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)
..............................................................................................................................................................TGTCGAGGTGGAGGTGTAATGATCT...................................................................25110.0010.0010.00---------------------------------------------
..............................................................................................................GAGATGATGGCGTATGAACACTA.....................................................................................................................2316.006.00--3.003.00------------------------------------------
......................................................................................................................................TGGCAAAATATGAATGGCCTGAAATGTCGAGGTGGAGGTGTAATGATCTATTTGTGTCCATTTTAG..................................................6614.004.00-4.00--------------------------------------------
.....................................................................................................................................ATGGCAAAATATGAATGGCCTGAAATGTCGAGGTGGAGGTGTAATGATCTATTTGTGTCCATTTTAG..................................................6714.004.00----4.00-----------------------------------------
...................................................................................................................GATGGCGTATGAACACTAA....................................................................................................................1913.003.00-----3.00----------------------------------------
............................................................................GTGTTTGGCACTATGAGA............................................................................................................................................................1812.002.00------2.00---------------------------------------
.......................................................................................................................................................CCTGAAATGTCGAGGTGGAGGT.............................................................................2212.002.00----------2.00-----------------------------------
....................................................................................................................................................................GGTGGAGGTGTAATGATCTAT.................................................................2112.002.00--------------2.00-------------------------------
........................................................................................ATGAGAAATGGATCTGAGGACG............................................................................................................................................2212.002.00----------------2.00-----------------------------
.............................................................................................................................................................ATGTCGAGGTGGAGGTGTAATGA......................................................................2312.002.00--1.001.00------------------------------------------
.......................................................................................TATGAGAAATGGATCTGAGGACGGAGATG......................................................................................................................................2912.002.00--------1.00--1.00----------------------------------
..........................................................................................GAGAAATGGATCTGAGGACGGAGATG......................................................................................................................................2611.001.00--------1.00-------------------------------------
.....................................................................................................CTGAGGACGGAGATGATGG..................................................................................................................................1911.001.00------1.00---------------------------------------
.............................................................................................................................................................ATGTCGAGGTGGAGGTGTA..........................................................................1911.001.00------------------------1.00---------------------
...........................................................................................................ACGGAGATGATGGCGTATG............................................................................................................................1911.001.00----------------------1.00-----------------------
.............................................................................................................................................................................................................TAAAAATCAAGGTGACCCCAAG.......................2211.001.00------------1.00---------------------------------
....................................................................................CACTATGAGAAATGGATCTGAGGACGG...........................................................................................................................................2711.001.00-------------------------------------------1.00--
........................................................................................ATGAGAAATGGATCTGAGGACGGAGATG......................................................................................................................................2811.001.00-----------------1.00----------------------------
................................................................................TTGGCACTATGAGAAATGGATCTG..................................................................................................................................................2411.001.00-----------------------------------1.00----------
............................................................................................................................................................................TGTAATGATCTATTTGTG............................................................1811.001.00-----------1.00----------------------------------
............................................................................................................................................................AATGTCGAGGTGGAGGTGTAATG.......................................................................2311.001.00-----------------------------------------1.00----
.....................................................................................................................................................................................................................AAGGTGACCCCAAGAAAATGGCTCCT...........2611.001.00------------------------------1.00---------------
...............................................................................................ATGGATCTGAGGACGGAGATGATGGCGTA..............................................................................................................................2911.001.00------------------------------------------1.00---
...........AATGTGGGCGGTTGAGAGTAGTCCCTCCTGC................................................................................................................................................................................................................311.000.00---------------------------------1.00------------
.......................................................GTAGTTTCTATGTTAGTTGTGGTGTTTGGC.....................................................................................................................................................................3011.001.00-------1.00--------------------------------------
........................................................................TGTGGTGTTTGGCACTTGGT..............................................................................................................................................................201.000.00-------------------------------------1.00--------
.................................................................................TGGCACTATGAGAAATGAG......................................................................................................................................................191.000.00---------1.00------------------------------------
..............................................................................................AATGGATCTGAGGACGGAGATGATGGCGTATGAAC.........................................................................................................................3511.001.00---------------------------------------------1.00
.......................................................................................................................GCGTATGAACACTAATGGC................................................................................................................1911.001.00----------------------------------------1.00-----
...........................................................................................................................................................................................................GGTAAAAATCAAGGTGACCCCAAGA......................2511.001.00---------------------1.00------------------------
........................................................................................................................................................CTGAAATGTCGAGGTGGAGGTGTAATGA......................................................................2811.001.00--------------------------------------------1.00-
..........................................................................................................................................................................................................AGGTAAAAATCAAGGTGA..............................1811.001.00----------------------------1.00-----------------
............................................................................GTGTTTGGCACTATGAGAAATGGATC....................................................................................................................................................2611.001.00-------------1.00--------------------------------
...........................................................TTTCTATGTTAGTTGTGAC............................................................................................................................................................................191.000.00------------------------------------1.00---------
....................................................................................................................ATGGCGTATGAACACTAA....................................................................................................................1811.001.00-------------------------1.00--------------------
.............................................................................................AAATGGATCTGAGGACGGAGATGATGGCG................................................................................................................................2911.001.00--------------------------------1.00-------------
.............................................................................................................GGAGATGATGGCGTATGAACACTAATGGCAA..............................................................................................................3111.001.00--------------------1.00-------------------------
.........................................................................................TGAGAAATGGATCTGAGGACGGAGATG......................................................................................................................................2711.001.00-1.00--------------------------------------------
...........................................................................................AGAAATGGATCTGAGGACGGAGATGAT....................................................................................................................................2711.001.00---------------1.00------------------------------
........................................................................................ATGAGAAATGGATCTGAGGACGGAGATGATG...................................................................................................................................3111.001.00--------------------------------------1.00-------
........................................................................................ATGAGAAATGGATCTGAGGACGGAGA........................................................................................................................................2611.001.00---------------------------1.00------------------
................................................................................................TGGATCTGAGGACGGTGCT.......................................................................................................................................191.000.00---------------1.00------------------------------
....................................................................................................................................AATGGCAAAATATGAATGGCCTGAA.............................................................................................2511.001.00--------1.00-------------------------------------
......................................................................................CTATGAGAAATGGATCTGAGGACGGA..........................................................................................................................................2611.001.00-----------------------------1.00----------------
.............................................................................................................................................................ATGTCGAGGTGGAGGTGT...........................................................................1811.001.00-----------------------1.00----------------------
............ATGTGGGCGGTTGAGAGTAGTCCCTCG...................................................................................................................................................................................................................271.000.00-------------------------------1.00--------------
............................................................................................................................TGAACACTAATGGCAAAATATGAAT.....................................................................................................2511.001.00------------------1.00---------------------------
......................................................................................................................................................................................TATTTGTGTCCATTTTAG..................................................1811.001.00-------------------1.00--------------------------
......................................................................................................................................................GCCTGAAATGTCGAGGTGG.................................................................................1911.001.00-------1.00--------------------------------------
............................................................................................GAAATGGATCTGAGGACGGAGATGA.....................................................................................................................................2511.001.00-------------1.00--------------------------------
............ATGTGGGCGGTTGAG...............................................................................................................................................................................................................................1520.500.50-----------------0.50----------------------------

Antisense strand
CTGGGAGGAAAAATGTGGGCGGTTGAGAGTAGTCCCTCTTGCATTGCCATCAGGAGTAGTTTCTATGTTAGTTGTGGTGTTTGGCACTATGAGAAATGGATCTGAGGACGGAGATGATGGCGTATGAACACTAATGGCAAAATATGAATGGCCTGAAATGTCGAGGTGGAGGTGTAATGATCTATTTGTGTCCATTTTAGGCAGGTAAAAATCAAGGTGACCCCAAGAAAATGGCTCCTCCTCCAAAGGA
...............................................................................................................((((.((.(((......((((...(((...((....)).))).((....))..))))....))).)).))))...................................................................
.........................................................................................................106..............................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189784SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)
...............................TGGCAATGCAAGAGGGAC......................................................................................................................................................................................................... 1811.001.00-------1.00--------------------------------------
..............................................................................................................................AACACTAATGGCAAAAATG......................................................................................................... 191.000.00------------1.00---------------------------------
....................................................................................................................................................................GGTGGAGGTGTAATGCCCC................................................................... 191.000.00---------1.00------------------------------------
..............................AGTCCCTCTTGCATTGTTT......................................................................................................................................................................................................... 191.000.00---------------------------------------1.00------
..............................AGTCCCTCTTGCATTTTTT......................................................................................................................................................................................................... 191.000.00----------------------------------1.00-----------
.........................................................................CATTTCTCATAGTGCCAAACACCAC........................................................................................................................................................ 2511.001.00--------------------------1.00-------------------