ID: uc002vrm.1_intron_14_0_chr2_231949829_f.3p
GENE: (15)
chr2:231951631-231951880+


(1)
AGO2.ip
(3)
B-CELL
(3)
BRAIN
(13)
CELL-LINE
(1)
CERVIX
(2)
HEART
(6)
LIVER
(1)
OTHER
(17)
SKIN
(3)
UTERUS
(1)
XRN.ip

Sense strand
AAATAAAAATAAAAATACATGTGTCTATTTTTTGAATGTATTCATTTATTGTATATGTTTAGAGGTGTGCAACATAATGTTTTGATATACCTATCAGTAGTGAGGTATACACTCACTGTTGAATGATGCTGACCTCTCATGTCAGTTTGGTCTAGTGGTAGACTACATAGTATAATATAATCTTAAACTTTTCCCCCTAGGTAAGTGATGTTAATGATGATGTCAGGAGGGCAGCAGTAGAATCACTTGG
..............................................................................................................((.(((((..((.....((((((.......))))))....)))))))))...........................................................................................
..............................................................................................................111....................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189785SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR189783SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
................................................................................................................................................GTTTGGTCTAGTGGTATG........................................................................................1817.000.0010.004.00-------1.00-------1.00---------1.00-------------------------
................................................................................................................................................GTTTGGTCTAGTGGTATGA.......................................................................................1916.000.0014.00-------2.00--------------------------------------------
................................................................................................................................................................................................................................AGGAGGGCAGCAGTAGAATCAC....2218.008.00--6.001.00--------------------------1.00----------------------
................................................................................................................................................GTTTGGTCTAGTGGTATGAT......................................................................................206.000.005.00-----------1.00----------------------------------------
............................................................................................................................................................................................................................TGTCAGGAGGGCAGCAGTAGAAT.......2313.003.00-------1.00-----------------------1.00-----1.00---------------
..........................................................................................................................................................................................................................GATGTCAGGAGGGCAGCAGTAG..........2212.002.00----------2.00------------------------------------------
.......................................................................................................................................................................................................................................CAGCAGTAGAATCACTTG.1812.002.00-------------1.00--1.00------------------------------------
.............................................................................................................................................................................................................................GTCAGGAGGGCAGCAGTAG..........1912.002.00-----2.00-----------------------------------------------
................................................................................................................................................GTTTGGTCTAGTGGTAT.........................................................................................172.000.00-2.00---------------------------------------------------
...............................................................................................................................................................................................................................CAGGAGGGCAGCAGTAGAATCAC....2312.002.00---2.00-------------------------------------------------
.................................................................................................................................................TTTGGTCTAGTGGTATG........................................................................................1772.000.14-0.14------0.14------0.570.29--0.14---------------------0.29-----0.140.140.14---
...................................................................................................................................................TGGTCTAGTGGTAGA........................................................................................1561.671.67------0.17--------0.670.170.17-0.170.17-------------------------0.17------
.................................................................................................................................................TTTGGTCTAGTGGTATGA.......................................................................................1871.570.14---------0.14-----0.57--------------------------0.14-0.29-----0.140.140.14
...............................................................................................................................................AGTTTGGTCTAGTGGTATG........................................................................................191.000.00------------------------1.00----------------------------
.......................................................................................................................................................................................................................................CAGCAGTAGAATCACTTT.181.000.00--------------------------1.00--------------------------
..........................................................................................................................................................................................................AAGTGATGTTAATGATGATGTCAGGAGGGCAGC...............3311.001.00------1.00----------------------------------------------
.....................................................................................................................................................GTCTAGTGGTAGACTAGTA..................................................................................191.000.001.00----------------------------------------------------
........................................................................................................................................................................................................................ATGATGTCAGGAGGGCAGCAGC............221.000.00----1.00------------------------------------------------
............................................................................................................................................................................................................................TGTCAGGAGGGCAGCAGTAGAATTCTG...2711.003.00------1.00----------------------------------------------
.............................................................................................................................................................................................................................GTCAGGAGGGCAGCAGTAGAATCACT...2611.001.00-----1.00-----------------------------------------------
................................................................................................................................................................................................................................AGGAGGGCAGCAGTAGAA........1811.001.00-------------1.00---------------------------------------
...................................................................................................................CTGTTGAATGATGCTGACCTCTC................................................................................................................2311.001.00-----------------------1.00-----------------------------
..................................................................................................................................................................................................................................GAGGGCAGCAGTAGAATCACTTGG2411.001.00----------------------------------1.00------------------
.............................................................................................................................................................................................................................GTCAGGAGGGCAGCAGTAGAAT.......2211.001.00----------------------------1.00------------------------
...........................................................................................................................................................................................................................ATGTCAGGAGGGCAGCAGTAGAACC......251.000.00----1.00------------------------------------------------
.....................................................................................................................................................................................................................ATGATGATGTCAGGAGGGCAGC...............2211.001.00--------------1.00--------------------------------------
............................................................................................................................................................................................................................TGTCAGGAGGGCAGCAGT............1811.001.00-----1.00-----------------------------------------------
..........................................................................................................................................................................................................................GATGTCAGGAGGGCAGCAGTAGAAT.......2511.001.00--------------------1.00--------------------------------
..................................................................................................................................................TTGGTCTAGTGGTAGAA.......................................................................................171.000.00-----------------------------------1.00-----------------
.................................................................................................................................................................................................................GTTAATGATGATGTCAGG.......................1811.001.00-------1.00---------------------------------------------
.......................................................................................................................................................................TAGTATAATATAATCTTT.................................................................181.000.00------------1.00----------------------------------------
...........................................................................................................................................................................................................................ATGTCAGGAGGGCAGCAGTA...........2011.001.00-----------1.00-----------------------------------------
......................................................................................................................................................................................................................TGATGATGTCAGGAGGGCAGCAGTAG..........2611.001.00-------------------1.00---------------------------------
................................................................................................................................................................................................................................AGGAGGGCAGCAGTAGAAGCAG....2211.001.00---1.00-------------------------------------------------
..............................................................................................................................................................................ATATAATCTTAAACTTTTCCCCC.....................................................2311.001.00------------------1.00----------------------------------
...........................................................................................................................................................................................................................ATGTCAGGAGGGCAGCAGTAGAATCACTTG.3011.001.00--------------------------------------1.00--------------
.........................................................................................................................................................................................................................TGATGTCAGGAGGGCAGCAGTA...........2211.001.00-----------1.00-----------------------------------------
................................................................................................................................................................................................................TGTTAATGATGATGTCAGGAGGGCAGC...............2711.001.00----1.00------------------------------------------------
...............................................................................................................................................................................................................ATGTTAATGATGATGTCAGGAGGGCA.................2611.001.00--------------------------------1.00--------------------
.......................................................................................................................................................................................................................GATGATGTCAGGAGGGCAGCAGTAGAA........2711.001.00---------------------------------1.00-------------------
....................................................................................................................................................................................................................AATGATGATGTCAGGAGGGCAGCAGTAGAAT.......3111.001.00---------------------------------------1.00-------------
........................................................................................................................................................................................................................ATGATGTCAGGAGGGCAG................1811.001.00--------------1.00--------------------------------------
...................................................................................................................................................TGGTCTAGTGGTAGAATA.....................................................................................1860.671.670.33--------------0.17-0.17-----------------------------------
...................................................................................................................................................................................................................................AGGGCAGCAGTAGAATC......1720.500.50----------------------------------------0.50------------
...................................................................................................................................................................................................................TAATGATGATGTCAGG.......................1630.330.33----------------0.33------------------------------------
.................................................................................................................................................................................................................................GGAGGGCAGCAGTAGAA........1730.330.33-------------------------------------------0.33---------
...................................................................................................................CTGTTGAATGATGCTGA......................................................................................................................1730.330.33------------------0.33----------------------------------
..................................................................................................................................................................................................................................GAGGGCAGCAGTAGAA........1640.250.25------------------------------------------0.25----------
............................................................................................................................................GTCAGTTTGGTCTAG...............................................................................................1540.250.25---------------------------------------------0.25-------
...................................................................................................................................................TGGTCTAGTGGTAGAAT......................................................................................1760.171.670.17----------------------------------------------------
...............................................................................................................................................AGTTTGGTCTAGTGG............................................................................................1560.170.17-------0.17---------------------------------------------
.................................................................................................................................................TTTGGTCTAGTGGTA..........................................................................................1570.140.14-----------------------------------------0.14-----------
.............................................................................................................................................................................AATATAATCTTAAACTT............................................................1770.140.14---------------------0.14-------------------------------

Antisense strand
AAATAAAAATAAAAATACATGTGTCTATTTTTTGAATGTATTCATTTATTGTATATGTTTAGAGGTGTGCAACATAATGTTTTGATATACCTATCAGTAGTGAGGTATACACTCACTGTTGAATGATGCTGACCTCTCATGTCAGTTTGGTCTAGTGGTAGACTACATAGTATAATATAATCTTAAACTTTTCCCCCTAGGTAAGTGATGTTAATGATGATGTCAGGAGGGCAGCAGTAGAATCACTTGG
..............................................................................................................((.(((((..((.....((((((.......))))))....)))))))))...........................................................................................
..............................................................................................................111....................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189785SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189782SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040018(GSM532903)
G701N. (cervix)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR189783SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
......................................................................................................................................................................................TTAAACTTTTCCCCCATTT................................................. 191.000.00---------1.00-------------------------------------------
......................................................................AACATAATGTTTTGATTCTA................................................................................................................................................................ 201.000.00---------------------1.00-------------------------------
.......................TCTATTTTTTGAATGTAACA............................................................................................................................................................................................................... 201.000.00-----------------------------1.00-----------------------
.......................TCTATTTTTTGAATGTCCA................................................................................................................................................................................................................ 191.000.00-------------------------1.00---------------------------
.............................................................................................TCAGTAGTGAGGTATGC............................................................................................................................................ 171.000.00----1.00------------------------------------------------
.AATAAAAATAAAAATACATTG.................................................................................................................................................................................................................................... 211.000.00------------------------------------1.00----------------
................................................................................................................................CTGACCTCTCATGTCAATA....................................................................................................... 191.000.00----------------------1.00------------------------------