ID: uc002vpd.2_intron_10_0_chr2_228401710_f.3p
GENE: AGFG1(11)
chr2:228416475-228416724+


(5)
BREAST
(4)
CELL-LINE
(1)
CERVIX
(2)
HEART
(1)
LIVER
(1)
OTHER
(3)
SKIN
(1)
XRN.ip

Sense strand
AAGAATAAAATTTCTACAAGTTACGTTAAACTGTGTAGCACTAAAACTCATTAACTTTGTTGGAATTTTGGAATTAACCCTGCCTTTAATGTACATCTTAGTATTTTTCAAGGTAAATGATGTCTTTTTACATTTACAATGTTGTGAGAAACTAAACATATCCTGTTGTATGTAACTGATCAGCCCTTCTCTTCTGTCAGCGGCAACCTTTGGCACTGCATCCATGAGCATGCCCACAGGATTCGGCACT
.....................................................................(((........((((((.((.((((......))))..)).)))))).......))).............................................................................................................................
..................................................51..........................................................................127.........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR040037(GSM532922)
G243T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR189785TAX577739(Rovira)
total RNA. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
.....................................................ACTTTGTTGGAATTTACGA..................................................................................................................................................................................1960.000.0038.0014.006.00---1.00--------1.00----
.....................................................ACTTTGTTGGAATTTACG...................................................................................................................................................................................1814.000.005.003.006.00-----------------
.......................................................................................................TTTTTCAAGGTAAATGATGTGCC............................................................................................................................231.000.00----1.00---------------
..........................................................................................................................................................................................................................................CACAGGATTCGGCACCA171.000.00--------------1.00-----
................................................................................................................................................................................TGATCAGCCCTTCTCTTCTGTC....................................................2211.001.00--------1.00-----------
......................................................................................................................................................................TGTATGTAACTGATCAGCC.................................................................1911.001.00---1.00----------------
.......................................................................................................................................................................................................................CTGCATCCATGAGCATGCCCACGGG..........251.000.00---1.00----------------
.....................................................ACTTTGTTGGAATTTATG...................................................................................................................................................................................181.000.00-1.00------------------
.......................................................................................................................................................................................................GCGGCAACCTTTGGCAC..................................1711.001.00----------------1.00---
.....................................................................................TTAATGTACATCTTAGTATTTTTCAAG..........................................................................................................................................2711.001.00-------------1.00------
........................................................................................................................................................................................................CGGCAACCTTTGGCAC..................................1611.001.00---------1.00----------
.....................................................ACTTTGTTGGAATTTAC....................................................................................................................................................................................171.000.00--1.00-----------------
........................................................................................................................................................................................................................................CCCACAGGATTCGGCG..161.000.00-----------1.00--------
.....................................................ACTTTGTTGGAATTTACTA..................................................................................................................................................................................191.000.001.00-------------------
..........................................................................................................................................................................................................................................CACAGGATTCGGCACAA171.000.00------------1.00-------
..............................................................................................................................................TGTGAGAAACTAAACAAAA.........................................................................................191.000.00-----1.00--------------
..........................................................................................................................................................................TGTAACTGATCAGCCC................................................................1620.500.50-----------------0.50--
.....................................................................................................................................................................................AGCCCTTCTCTTCTGTCAG..................................................1920.500.50------------------0.50-
...................................................................................................................................................................................................................GGCACTGCATCCATGA.......................1630.330.33-------------------0.33

Antisense strand
AAGAATAAAATTTCTACAAGTTACGTTAAACTGTGTAGCACTAAAACTCATTAACTTTGTTGGAATTTTGGAATTAACCCTGCCTTTAATGTACATCTTAGTATTTTTCAAGGTAAATGATGTCTTTTTACATTTACAATGTTGTGAGAAACTAAACATATCCTGTTGTATGTAACTGATCAGCCCTTCTCTTCTGTCAGCGGCAACCTTTGGCACTGCATCCATGAGCATGCCCACAGGATTCGGCACT
.....................................................................(((........((((((.((.((((......))))..)).)))))).......))).............................................................................................................................
..................................................51..........................................................................127.........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)
SRR040037(GSM532922)
G243T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189782SRR189785TAX577739(Rovira)
total RNA. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
.....................................................................................................................................................................................AGCCCTTCTCTTCTGTTTTC................................................. 201.000.00-------1.00------------
.................................................................................................................................................................................................................................GAGCATGCCCACAGGATTCGG.... 211.000.00----------1.00---------