| (1) B-CELL | (1) BREAST | (8) CELL-LINE | (1) CERVIX | (5) OTHER |
| CAAATCGTTTTCAGTTCTTCTCTTGTGTTTAGCAACATTGTAAATAGTGTATACATATGGAGACTTGTCATAAACTTTCTTTTTCTTTTTCTCATTTGCTACTTATTCTTTACAGACCGAGAGAGTTGTAATTTAATTGCCATTGTATATACAAGGTATCTGAAGCTTCCTAGATGACTTTTTTCTTTTTTTTTTTTTAGGTTAATGTTTATATACAATTACTTTAACATTGGATTTGGGAAATGGAACA ...........................................................................................(((((((.(((..(((((((........))))))).))).((((..((((.((((....))))))))..))))......)))))))......................................................................... ....................................................................69.................................................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189784 | SRR189785 | SRR324841(SRX087285) "Total RNA, no rRNA depletion". (cell line) | SRR189787 | TAX577740(Rovira) total RNA. (breast) | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR040024(GSM532909) G613N. (cervix) | SRR189786 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTGGC................................................. | 25 | 30.00 | 0.00 | 28.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTGGC.................................................. | 24 | 22.00 | 0.00 | 19.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTGG................................................... | 23 | 21.00 | 0.00 | 13.00 | 7.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTCTGG................................................ | 26 | 9.00 | 0.00 | 9.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTCG.................................................. | 24 | 9.00 | 0.00 | 1.00 | - | 4.00 | - | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTATG.................................................. | 24 | 7.00 | 0.00 | - | - | 1.00 | 2.00 | - | 4.00 | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTCGGC................................................ | 26 | 7.00 | 0.00 | 5.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CTTTTTTCTTTTTTTTTTTTTACC................................................. | 24 | 7.00 | 0.00 | 5.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTACAG................................................ | 26 | 6.00 | 0.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTACAG................................................. | 25 | 6.00 | 0.00 | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTCG.................................................... | 22 | 5.00 | 0.00 | 2.00 | - | 1.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CTTTTTTCTTTTTTTTTTTTTCCCG................................................ | 25 | 5.00 | 0.00 | - | - | 1.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTATG................................................. | 25 | 5.00 | 0.00 | - | - | 1.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTATG................................................... | 23 | 4.00 | 0.00 | - | - | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTGGG.................................................. | 24 | 4.00 | 0.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTGGGC................................................. | 25 | 4.00 | 0.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................ATGACTTTTTTCTTTTTTTTTTTTCAGG................................................. | 28 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTCGGC.................................................. | 24 | 3.00 | 0.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTGGCA................................................ | 26 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTGGAG................................................. | 25 | 3.00 | 0.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTCGG................................................. | 25 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTAG.................................................. | 24 | 3 | 2.33 | 2.33 | 1.33 | 0.33 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTCTTG.................................................. | 24 | 2.00 | 0.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TGACTTTTTTCTTTTTTTTTTTTGG................................................... | 25 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTGCTG................................................. | 25 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTAATAG............................................... | 27 | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTCGG................................................... | 23 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTCGGC.................................................... | 22 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TTTTTTCTTTTTTTTTTTTTAGCCGG.............................................. | 26 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CTTTTTTCTTTTTTTTTTTTTCTAG................................................ | 25 | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TGACTTTTTTCTTTTTTTTTTTTTCTG................................................. | 27 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................ACTTTCTTTTTCTTTTTCG.............................................................................................................................................................. | 19 | 2.00 | 0.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTCGAG................................................ | 26 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CTTTTTTCTTTTTTTTTTTTTCATG................................................ | 25 | 2.00 | 0.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTGGTT................................................. | 25 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTGCC................................................. | 25 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTCCGG................................................ | 26 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTGAGG................................................. | 25 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTACT................................................... | 23 | 2.00 | 0.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TGACTTTTTTCTTTTTTTTTTTTAAG.................................................. | 26 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTCG...................................................... | 20 | 2.00 | 0.00 | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TTTTTTCTTTTTTTTTTTTTAGGAC............................................... | 25 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................TTCTTTTTTTTTTTTTAGCTG............................................... | 21 | 2.00 | 0.00 | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTCGGG.................................................. | 24 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTCGAG.................................................... | 22 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CTTTTTTCTTTTTTTTTTTTTATTTG............................................... | 26 | 2.00 | 0.00 | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTCCGG.................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................TCTTTTTTTTTTTTTAGGGGTG............................................. | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................ATGACTTTTTTCTTTTTTTTTTTTAAG.................................................. | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................AACTTTCTTTTTCTTTTCG............................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TTTTTTCTTTTTTTTTTTTTAGCCAG.............................................. | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTCCTT................................................ | 26 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CTTTTTTCTTTTTTTTTTTTTACAG................................................ | 25 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTGGAC................................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTCTGG.................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTATC................................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................AGCAACATTGTAAATCTAG......................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTACTG................................................. | 25 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTACC.................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................ATGACTTTTTTCTTTTTTTTTTTG..................................................... | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTAATG.................................................. | 24 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTACTG...................................................... | 20 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTAGG................................................. | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTAAGC................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CTTTTTTCTTTTTTTTTTTTACGG................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................TCTTTTTTTTTTTTTAGGTTAGC............................................ | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................TTCTTTTTCTTTTTCTAGCC.......................................................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTCATG................................................ | 26 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TTTTTTCTTTTTTTTTTTTTAGCGGG.............................................. | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................TTTTTCTTTTTCTCATTTCATG..................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTGGCC................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................CTTTCTTTTTCTTTTTCTAAG........................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTGTTG................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CTTTTTTCTTTTTTTTTTTTTATGG................................................ | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TGACTTTTTTCTTTTTTTTCCTG..................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TGACTTTTTTCTTTTTTTTTTTTCTTG................................................. | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................TTCTTTTTCTTTTTCTCAGTTG........................................................................................................................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTCATG.................................................... | 22 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTACTG.................................................. | 24 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................TTTCTTTTTCTTTTTCTCATG.......................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................ACCGAGAGAGTTGTAGGTG.................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTCAGG.................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TGACTTTTTTCTTTTTTTTTTTACTG.................................................. | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTCGC................................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................TTTCTTTTTTTTTTTTTAGCCTC.............................................. | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................TTTCTTTTTTTTTTTTTAGCCAG.............................................. | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TGACTTTTTTCTTTTTTTTTTTTACA.................................................. | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................TTTCTTTTTCTTTTTCTCAAGCC........................................................................................................................................................ | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................TTCTTTTTTTTTTTTTAGGTTTCAT........................................... | 25 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................AACTTTCTTTTTCTTTTTAAG............................................................................................................................................................. | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTGGAA................................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTATTT................................................ | 26 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................GACTTTTTTCTTTTTTTTTTTTTCAG................................................. | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTCGG..................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTGCT................................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTCTTG................................................ | 26 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CTTTTTTCTTTTTTTTTTTTTACATG............................................... | 26 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CTTTTTTCTTTTTTTTTTTTATAA................................................. | 24 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................TTCTTTTTCTTTTTCTCATGATT....................................................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTCATC................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TGACTTTTTTCTTTTTTTTTTTTTCCG................................................. | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................TTTTTCTTTTTTTTTTTTTAGCAG............................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TGACTTTTTTCTTTTTTTTTTTTTACTG................................................ | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTACCCG............................................... | 27 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTCCAG.................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTAACC................................................. | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TGACTTTTTTCTTTTTTTTTTTTTAAG................................................. | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................AGCAACATTGTAAATGGCG......................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTGCTG................................................ | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTACTCG............................................... | 27 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTCAGG................................................ | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTAAGG................................................ | 26 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTACTG................................................ | 26 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................TCTTTTTTTTTTTTTAGGGCG.............................................. | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................TTTTTCTTTTTTTTTTTTTAGCAGC.............................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTAGG.................................................. | 24 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................TCTTTACAGACCGAGCATC............................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| .................................................................................................................................................................................CTTTTTTCTTTTTTTTTTTTTCTGC................................................ | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TTTTTTCTTTTTTTTTTTTTAGCCTT.............................................. | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................ATGACTTTTTTCTTTGGAG.......................................................... | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................TTAGCAACATTGTAATCAG........................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTGGGG................................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTCCG................................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTCGAG.................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TGACTTTTTTCTTTTTTTTTTTTTGAG................................................. | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTACAA................................................. | 25 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................TCATAAACTTTCTTTTTCTAG.................................................................................................................................................................. | 21 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTCTG................................................. | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TGACTTTTTTCTTTTTTTTTTTTCAGG................................................. | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTAAAG................................................ | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................AACTTTCTTTTTCTTTTAAG.............................................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................ATGACTTTTTTCTTTTTCAGG........................................................ | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTGTCT................................................ | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................AGATGACTTTTTTCTTTTGTT.......................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................TTTTCTTTTTTTTTTTTTAGGTTG.............................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................ATGACTTTTTTCTTTTTTTTTACC..................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TTTTTTCTTTTTTTTTTTTTAGGTA............................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTCAAG.................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTGCAG................................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTCCAG................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................TTTCTTTTTTTTTTTTTAGGTGGGG............................................ | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTCAG................................................. | 25 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTAAAGC............................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................TTCTTTTTCTTTTTCTACTA.......................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .................................................................................................................................................................................CTTTTTTCTTTTTTTTTTTTTCAGC................................................ | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TGACTTTTTTCTTTTTTTTTTTTAGA.................................................. | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTGGGG................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................TTTTCTTTTTTTTTTTTTAGGTTGGG............................................ | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................CTTTCTTTTTCTTTTTCTCCTTG......................................................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTATTTT............................................... | 27 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TTTTTTCTTTTTTTTTTTTTAGGTGGGG............................................ | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................ATGACTTTTTTCTTTTTTTTTTTTT.................................................... | 25 | 3 | 1.00 | 1.00 | 0.67 | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTGGCA................................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................ACTTTCTTTTTCTTTTTCCTTG........................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................ATGACTTTTTTCTTTTTTTTTTTTTTTG................................................. | 28 | 3 | 0.67 | 1.00 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................TTTTTCTTTTTTTTTTTTTAGGTT............................................... | 24 | 2 | 0.50 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTAGACAG.............................................. | 28 | 3 | 0.33 | 2.33 | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTAGTTTA.............................................. | 28 | 3 | 0.33 | 2.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................ATGACTTTTTTCTTTTTTTTTTTTTG................................................... | 26 | 3 | 0.33 | 1.00 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................ATGACTTTTTTCTTTTTTTTTTTTTTAAG................................................ | 29 | 3 | 0.33 | 1.00 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................ATGACTTTTTTCTTTTTTTTTTTTTGAG................................................. | 28 | 3 | 0.33 | 1.00 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................ACTTTTTTCTTTTTTTTTTTTTAGTGG............................................... | 27 | 3 | 0.33 | 2.33 | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................ATGACTTTTTTCTTTTTTTTTTCAGG................................................... | 26 | 5 | 0.20 | 0.20 | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................ATGACTTTTTTCTTTTTTTTTTGGG.................................................... | 25 | 5 | 0.20 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................ATGACTTTTTTCTTTTTTTTTT....................................................... | 22 | 5 | 0.20 | 0.20 | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CAAATCGTTTTCAGTTCTTCTCTTGTGTTTAGCAACATTGTAAATAGTGTATACATATGGAGACTTGTCATAAACTTTCTTTTTCTTTTTCTCATTTGCTACTTATTCTTTACAGACCGAGAGAGTTGTAATTTAATTGCCATTGTATATACAAGGTATCTGAAGCTTCCTAGATGACTTTTTTCTTTTTTTTTTTTTAGGTTAATGTTTATATACAATTACTTTAACATTGGATTTGGGAAATGGAACA ...........................................................................................(((((((.(((..(((((((........))))))).))).((((..((((.((((....))))))))..))))......)))))))......................................................................... ....................................................................69.................................................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189784 | SRR189785 | SRR324841(SRX087285) "Total RNA, no rRNA depletion". (cell line) | SRR189787 | TAX577740(Rovira) total RNA. (breast) | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR040024(GSM532909) G613N. (cervix) | SRR189786 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ................................................................................................................................................................................................TTTTTTAGGTTAATGTTAG....................................... | 19 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................GACTTTTTTCTTTTTTTGTGT...................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ..........TCAGTTCTTCTCTTGTGAA............................................................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| .............................................TGACAAGTCTCCATATGTATACACT.................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................TTTTTTTTAGGTTAATGTATG....................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................CATTAACCTAAAAAAAAAAA........................................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ...............................................................................................................................................................................GACTTTTTTCTTTTTTTTTTGTGT................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ..........................................................................................................................................................................................ATTAACCTAAAAAAAAAAAA............................................ | 20 | 9 | 0.11 | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.11 |