ID: uc002vny.2_intron_14_0_chr2_225422574_r.3p
GENE: CUL3(1)
chr2:225422524-225422773-


(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(1)
AGO3.ip 		(7)
B-CELL 		(1)
BRAIN 		(4)
BREAST 		(34)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(4)
HELA 		(5)
LIVER 		(6)
OTHER 		(2)
RRP40.ip 		(21)
SKIN 		(1)
TESTES 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
CAGATCTAGAACCTATTTTTAAATGTATCCTTTTTTTCCCCCTGTTAAAATAGGTTGTTAATGTTCTTATGTGTCATAGATTTATAATCATATCTATATAATACAATATTTACTATATATGGACAAATATAGAAAGACTTTCAACCATTGGTTTTTTTTTTTTTTTTTTTTTTGTCTCTTCTCTCTCTTGGATATTACAGATGACCATGGATGAAAAATATGTAAACAGCATTTGGGACCTTCTGAAAAA
............................................................................................((((((((...............)))))))).......(((((((((..........)))))))))............................................................................................
..........................................................................................91..................................................................................175.........................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189786SRR343337SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR343336SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM532930(GSM532930)
G702T. (cervix)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR038860(GSM458543)
MM426. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTAAAC............................................................................2738.000.0028.008.00--1.00--------1.00----------------------------------------------------------------------------
................................................................................................................................................................................................................................AACAGCATTTGGGACCTTCTGA....22135.0035.00--7.003.00-2.004.00--------------2.00-1.00--2.002.001.00---1.00---------------1.00-----1.001.00-1.00-----1.00-1.00---------------1.001.00-1.001.00----
................................................................................................................................................................................................................................AACAGCATTTGGGACCTTCTGAA...23125.0025.00--11.004.00--------------1.00----------1.00-----------1.00-1.00------------1.00-1.00-1.00-----1.00--------1.00----1.00---------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTTAAC...........................................................................2822.000.0012.0010.00----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTTAAAC..........................................................................2914.000.0011.001.00--2.00-------------------------------------------------------------------------------------
................................................................................................................................................................................................................................AACAGCATTTGGGACCTTCT......20111.0011.00-----------1.002.00-------1.00-1.00-----------1.00----------1.00---------------1.00-----1.00----------1.00----1.00------
................................................................................................................................................................................................................................AACAGCATTTGGGACCTTC.......1918.008.00-----------3.001.00----2.00----1.00--------------------------1.00----------------------------------------
...................................................................................................................................................................................................................................AGCATTTGGGACCTTCTGA....1917.007.00-------7.00----------------------------------------------------------------------------------
................................................................................................................................................................................................................................AACAGCATTTGGGACCTTCTGAAA..2417.007.00--4.00-------------------------------------------------1.00---------1.00-------1.00-------------------
.....................................CCCCCTGTTAAAATAGC....................................................................................................................................................................................................176.000.00---------6.00--------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTCGGC............................................................................266.000.006.00-----------------------------------------------------------------------------------------
................................................................................................................................................................................................................................AACAGCATTTGGGACCTTCTGAT...2316.0035.00-----6.00------------------------------------------------------------------------------------
................................................................................................................................................................................................................................AACAGCATTTGGGACCTTCTGAAT..2416.0025.00--1.002.00-2.00------------------------------------------------------------------1.00-----------------
...............................................................................................................................................................................................................................AAACAGCATTTGGGACCTTCTGAAA..2515.005.00--3.00----------------------------1.00-----1.00----------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTCGGC...............................................................................245.000.004.001.00----------------------------------------------------------------------------------------
..........................................................................................................................................................TTTTTTTTTTTTTTTTTTTGTCGGCT......................................................................265.000.003.002.00----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTCGG...........................................................................275.000.005.00-----------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................TAAACAGCATTTGGGACCTCTG......225.000.00--------------2.00--------------------1.001.00--------------------------------1.00--------------------
................................................................................................................................................................................................................................AACAGCATTTGGGACCTTCTG.....2114.004.00--2.00---1.00-------------------------------------------------------------1.00---------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTAAAA...........................................................................284.000.002.002.00----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTAACC..........................................................................284.000.003.001.00----------------------------------------------------------------------------------------
................................................................................................................................................................................................................................AACAGCATTTGGGACCT.........1723.503.50----------2.50-----------------------0.50------------------------------------------------------0.50
................................................................................................................................................................................................................................AACAGCATTTGGGACCTTCTGAAAAA2613.003.00--1.002.00--------------------------------------------------------------------------------------
................................................................................................................................................................................................................................AACAGCATTTGGGACCTTCTGAAAA.2513.003.00------1.00-----------1.00---------------------------1.00-------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCGGC.............................................................................263.000.001.002.00----------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................AGCATTTGGGACCTTCTGAAAAA2313.003.00--1.00-------1.00----1.00--------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTCTA................................................................................233.000.001.002.00----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTATG...........................................................................272.000.001.001.00----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTCACC..........................................................................282.000.002.00-----------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................AGCATTTGGGACCTTCTGAA...2012.002.00---1.00------------1.00-------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTTTTTTC...........................................................................292.000.00-1.00-----------------1.00----------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTTCGGC.........................................................................292.000.002.00-----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTTGGG...........................................................................282.000.002.00-----------------------------------------------------------------------------------------
..............................................................................................................................................................................................................ATGGATGAAAAATATGTAAACAGCATTTGGGACC..........3412.002.00------------------------------2.00-----------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTTTCGG..........................................................................292.000.002.00-----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTATT...........................................................................272.000.001.001.00----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTTTGTC..........................................................................2912.002.002.00-----------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................ACAGCATTTGGGACCTTCT......1912.002.00------2.00-----------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTAACC............................................................................272.000.002.00-----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTTAACT..........................................................................292.000.001.00------------1.00----------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTTGTT...........................................................................282.000.001.001.00----------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GATGACCATGGATGAAAAAT...............................2012.002.00---------------------------------1.00------------------------------------------1.00-------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTTAACC..........................................................................292.000.002.00-----------------------------------------------------------------------------------------
.............................................................................................................................................................TTTTTTTTTTTTTTTTGTCGGCT......................................................................232.000.001.001.00----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTTCCCC..........................................................................292.000.002.00-----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCAAC.............................................................................262.000.002.00-----------------------------------------------------------------------------------------
............................................................................................................................................................TTTTTTTTTTTTTTTTTGTCGGCT......................................................................242.000.001.001.00----------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................CAGCATTTGGGACCTTCTGAA...2112.002.00----------------------------------------------------------------1.00------------1.00------------
...................................................................................................................................................................................................................................AGCATTTGGGACCTTCTGAAA..2112.002.00--2.00---------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTACC............................................................................272.000.002.00-----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTAC.............................................................................262.000.002.00-----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTCAAC..........................................................................282.000.002.00-----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTAACT...........................................................................282.000.002.00-----------------------------------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTGTCGGCT......................................................................292.000.002.00-----------------------------------------------------------------------------------------
..............................................................................................................................................................TTTTTTTTTTTTTTTGTCTCGCCC....................................................................241.000.00-1.00----------------------------------------------------------------------------------------
.....................................CCCCCTGTTAAAATAGGTTGTTAA.............................................................................................................................................................................................2411.001.00----------------------------------------1.00-------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTTGGGTG........................................................................301.000.001.00-----------------------------------------------------------------------------------------
...............................................................................................................................................................................................................TGGATGAAAAATATGTAAACAGC....................2311.001.00---------------1.00--------------------------------------------------------------------------
........................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTGTCGGCG......................................................................281.000.00-1.00----------------------------------------------------------------------------------------
.....................................................................................................................................................................TTTTTTTTGTCTCTTGGAG..................................................................191.000.001.00-----------------------------------------------------------------------------------------
.........................................................................................................................................................TTTTTTTTTTTTTTTTTTTTGTCGGCT......................................................................271.000.001.00-----------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTCGGC.................................................................................231.000.00-------------1.00----------------------------------------------------------------------------
.................................................................................................................................................................................................................................ACAGCATTTGGGACCTTCTGAA...2211.001.00---------------------------------------1.00--------------------------------------------------
....................................................................................................................................................................TTTTTTTTTGTCTCTTCTCTCTCTTG............................................................2611.001.001.00-----------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................AAACAGCATTTGGGACCTTCTGA....2311.001.00-----------------------------1.00------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTTTGTTGT........................................................................311.000.001.00-----------------------------------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTGTCTCTCAAG...................................................................321.000.00----1.00-------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTGG...............................................................................251.000.001.00-----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTCGAC..........................................................................281.000.001.00-----------------------------------------------------------------------------------------
......................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTTTGTTTC........................................................................281.000.00----1.00-------------------------------------------------------------------------------------
...........................................................................................................................................................TTTTTTTTTTTTTTTTTTGTCGGGC......................................................................251.000.00-1.00----------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTTTGGGC...........................................................................291.000.001.00-----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTTCCC...........................................................................281.000.001.00-----------------------------------------------------------------------------------------
...............................................................................................................................................................................CTCTTCTCTCTCTTGGATATTACAGATGA..............................................2911.001.00------------------------------------------1.00-----------------------------------------------
......................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTTTGTTTGG.......................................................................291.000.001.00-----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTTCTC...........................................................................281.000.00-1.00----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTTGGGG.........................................................................291.000.001.00-----------------------------------------------------------------------------------------
..............................................................................................................................................................TTTTTTTTTTTTTTTGTCTCTTGG....................................................................241.000.00-1.00----------------------------------------------------------------------------------------
.....................................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTTTCGCC.........................................................................281.000.001.00-----------------------------------------------------------------------------------------
.....................................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTTTCGGC.........................................................................281.000.001.00-----------------------------------------------------------------------------------------
..........................................................................................................................................................TTTTTTTTTTTTTTTTTTTGTCTCGGG.....................................................................271.000.001.00-----------------------------------------------------------------------------------------
...................................................................................................................................................................TTTTTTTTTTGTCTCTTTGTG..................................................................211.000.001.00-----------------------------------------------------------------------------------------
...........................................................................................................................................................TTTTTTTTTTTTTTTTTTGTCTCTTTGG...................................................................281.000.00----1.00-------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTCGC.............................................................................251.000.001.00-----------------------------------------------------------------------------------------
...............................................................................................................................................ACCATTGGTTTTTTTTTTTTTTTCAAC................................................................................271.000.00-1.00----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTCTCT............................................................................261.000.00-1.00----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTCAAC............................................................................261.000.001.00-----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCGGG.............................................................................261.000.00-1.00----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTAATG............................................................................271.000.001.00-----------------------------------------------------------------------------------------
.....................................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTTTCCGT.........................................................................281.000.001.00-----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTTGTCTTT.......................................................................311.000.001.00-----------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................ACAGCATTTGGGACCTTCTGA....2111.001.00-----------------------------------------------1.00------------------------------------------
................................................................................................................................................................................................................................AACAGCATTTGGGACCTTCTGATT..2411.0035.00-------------------------------1.00----------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTTTCCCC.........................................................................301.000.001.00-----------------------------------------------------------------------------------------
..............................................................................................................................................................TTTTTTTTTTTTTTTGTCTCTTCAAG..................................................................261.000.00-1.00----------------------------------------------------------------------------------------
...........................................................................................................................................................TTTTTTTTTTTTTTTTTTGTCTCGGCG....................................................................271.000.001.00-----------------------------------------------------------------------------------------
...........................................................................................................................................................................................................ACCATGGATGAAAAATATGTA..........................2111.001.00-------------------------1.00----------------------------------------------------------------
..........................................................................................................................................................................................................................TATGTAAACAGCATTTGGGACCTTCTGA....2811.001.00-----------------------1.00------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTCGGG..........................................................................281.000.001.00-----------------------------------------------------------------------------------------
...................................................................................................................................................................TTTTTTTTTTGTCTCTTTGCT..................................................................211.000.00-1.00----------------------------------------------------------------------------------------
...............................................................................................................................................ACCATTGGTTTTTTTATAC........................................................................................191.000.001.00-----------------------------------------------------------------------------------------
...............................................................................................ATATAATACAATATTTTAAG.......................................................................................................................................201.000.00------------------------1.00-----------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTAATA..........................................................................281.000.00-1.00----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTCCGG..........................................................................281.000.001.00-----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTTGTTTCA.......................................................................311.000.001.00-----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTTCGAG.........................................................................291.000.00-1.00----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCTTC.............................................................................261.000.001.00-----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTTCAGT..........................................................................291.000.001.00-----------------------------------------------------------------------------------------
...............................................................................................................................................ACCATTGGTTTTTTTTTTTTTTTCACC................................................................................271.000.00-1.00----------------------------------------------------------------------------------------
.....................................................................................................................................................GGTTTTTTTTTTTTTTTTTTTTTTCTAC.........................................................................281.000.001.00-----------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTCTTC................................................................................241.000.001.00-----------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................AAACAGCATTTGGGACCTTCTGAA...2411.001.00----------------1.00-------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTTTCAAC.........................................................................301.000.00-1.00----------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTTGAAG............................................................................281.000.00-1.00----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCAAT.............................................................................261.000.00-1.00----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTCAAC............................................................................271.000.001.00-----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTTGGCTC........................................................................301.000.001.00-----------------------------------------------------------------------------------------
............................................................................................................................................................TTTTTTTTTTTTTTTTTGTCTCTAAGA...................................................................271.000.001.00-----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCTGG.............................................................................261.000.001.00-----------------------------------------------------------------------------------------
................................................................................................................................................................................................................GGATGAAAAATATGTAAAC.......................1911.001.00--------------------------------1.00---------------------------------------------------------
..........................................................................................................................................................TTTTTTTTTTTTTTTTTTTGTCGGCG......................................................................261.000.00-1.00----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCCAC.............................................................................261.000.00-1.00----------------------------------------------------------------------------------------
............................................................................................................................................................TTTTTTTTTTTTTTTTTGTCTCTTCCC...................................................................271.000.001.00-----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTCAAA............................................................................261.000.001.00-----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCTAA.............................................................................261.000.00-1.00----------------------------------------------------------------------------------------
.............................................................................................................................................................TTTTTTTTTTTTTTTTGTCTCTTTTC...................................................................261.000.001.00-----------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTGTTT...............................................................................251.000.001.00-----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTCTAA...............................................................................241.000.001.00-----------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTATTT.............................................................................271.000.00----1.00-------------------------------------------------------------------------------------
..............................................................................................................................................................TTTTTTTTTTTTTTTGTCTCTTGCGG..................................................................261.000.001.00-----------------------------------------------------------------------------------------
...............................................................................................................................................................................................................TGGATGAAAAATATGTAAACAGCA...................2411.001.00--------------------------------------------------------------------------------------1.00---
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTTTTGT............................................................................281.000.00-1.00----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCCCC.............................................................................261.000.001.00-----------------------------------------------------------------------------------------
...........................................................................................................................................................TTTTTTTTTTTTTTTTTTGTCGGCT......................................................................251.000.00-1.00----------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTTTTCG............................................................................281.000.001.00-----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTTCGAC.........................................................................291.000.001.00-----------------------------------------------------------------------------------------
...............................................................................................................................................ACCATTGGTTTTTTTTTTTTTGGCC..................................................................................251.000.001.00-----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTACCC..........................................................................281.000.00-1.00----------------------------------------------------------------------------------------
..................................................................................................................................................................TTTTTTTTTTTGTCTCTTTATT..................................................................221.000.00----1.00-------------------------------------------------------------------------------------
........................................................................................................................................................................................................ATGACCATGGATGAAAAATATGTA..........................2411.001.00---------------------------------1.00--------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTCTTG..........................................................................281.000.001.00-----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTAGAA..........................................................................281.000.001.00-----------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTGGC..............................................................................261.000.00-1.00----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCAAG.............................................................................261.000.001.00-----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTTGGGC.........................................................................291.000.001.00-----------------------------------------------------------------------------------------
................................................................................................................................................................................................................................AACAGCATTTGGGACCTTTTGA....221.000.00--------------------------------------1.00---------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTAAGG...........................................................................281.000.00-1.00----------------------------------------------------------------------------------------
...............................................................................................................................................................................................................................AAACAGCATTTGGGACCTTCT......2111.001.00--------------------1.00---------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTCGT................................................................................231.000.00-1.00----------------------------------------------------------------------------------------
..........................................................................................................................................................................TTTGTCTCTTCTCTCTCTTGGATATTACAG..................................................3011.001.00--------------------------------------------------------------------------1.00---------------
...............................................................................................................................................................TTTTTTTTTTTTTTGTCGGTC......................................................................211.000.001.00-----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTCCAC............................................................................271.000.001.00-----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTTGGCCC........................................................................301.000.001.00-----------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTTTTAGC...........................................................................291.000.001.00-----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTAACC...........................................................................281.000.001.00-----------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTCACT.................................................................................231.000.00----1.00-------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTTAGGG...........................................................................281.000.001.00-----------------------------------------------------------------------------------------
......................................................................................................................................................................................................................AAAATATGTAAACAGCATTTGGGACCTTCTGAA...3311.001.00--------------------------------------------------1.00---------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTGTTG...............................................................................251.000.001.00-----------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTACTT...............................................................................251.000.00-1.00----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTCAGG............................................................................271.000.00-1.00----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTCGAC............................................................................261.000.001.00-----------------------------------------------------------------------------------------
......................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTTTGTTACA.......................................................................291.000.001.00-----------------------------------------------------------------------------------------
................................................................................................................................................................................................................................AACAGCATTTGGGACCTTCTGAAAT.2511.007.00-------------------------1.00----------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTAACC..............................................................................251.000.00----1.00-------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTTTTCC............................................................................281.000.00-1.00----------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTTTTTTTCG.........................................................................311.000.00-------------------1.00----------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTAAAA............................................................................271.000.001.00-----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTCGT...........................................................................271.000.00-1.00----------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTACG................................................................................241.000.001.00-----------------------------------------------------------------------------------------
......................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTTTGTCTTGTT.....................................................................311.000.00----1.00-------------------------------------------------------------------------------------
................................................................................................................................................................TTTTTTTTTTTTTGTCGGCT......................................................................201.000.00-1.00----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTATTG..........................................................................281.000.00---------------------------------------------------------------------------------------1.00--
................................................................................................................................................................................................................................AACAGCATTTGGGACCTTCTGCA...2311.004.00-----------------------------------------------------------1.00------------------------------
.....................................................................................................................................................................................................................AAAAATATGTAAACAGCATTTGGGACCTTCTGA....3311.001.00----------------------------1.00-------------------------------------------------------------
..........................................................................................................................................................TTTTTTTTTTTTTTTTTTTGTCGTAG......................................................................261.000.00-------------------------------------------------------------------------------1.00----------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTCATT.............................................................................261.000.001.00-----------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTTTTCCAG..........................................................................301.000.001.00-----------------------------------------------------------------------------------------
.....................................................................................................................................................................................................CAGATGACCATGGATGAA...................................1811.001.00-------------------------------------------------------------------------1.00----------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTCGGC..........................................................................281.000.001.00-----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTTCGCC.........................................................................291.000.001.00-----------------------------------------------------------------------------------------
................................................................................................................................................................................................................................AACAGCATTTGGGACCTTCTGTT...2311.004.00-----1.00------------------------------------------------------------------------------------
...............................................................................................................................................................TTTTTTTTTTTTTTGTCTCTTTATA..................................................................251.000.00----1.00-------------------------------------------------------------------------------------
...........................................................................................................................................................................................................ACCATGGATGAAAAATATATA..........................211.000.00------1.00-----------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTTTTCGCC............................................................................271.000.001.00-----------------------------------------------------------------------------------------
...................................................................................................................................................TTGGTTTTTTTTTTTTTTTTCAAC...............................................................................241.000.001.00-----------------------------------------------------------------------------------------
....................................................................................................................................................TGGTTTTTTTTTTTTTTTTTTTTTAGG...........................................................................271.000.001.00-----------------------------------------------------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTTTTCTTT..........................................................................301.000.001.00-----------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................CATTTGGGACCTTCTG.....1650.600.60----------------------------------------------------------------------------------------0.60-
.......................................................................................................................................................................................................................................TTTGGGACCTTCTGA....1570.290.29--------------0.14--------------------0.14------------------------------------------------------

Antisense strand
CAGATCTAGAACCTATTTTTAAATGTATCCTTTTTTTCCCCCTGTTAAAATAGGTTGTTAATGTTCTTATGTGTCATAGATTTATAATCATATCTATATAATACAATATTTACTATATATGGACAAATATAGAAAGACTTTCAACCATTGGTTTTTTTTTTTTTTTTTTTTTTGTCTCTTCTCTCTCTTGGATATTACAGATGACCATGGATGAAAAATATGTAAACAGCATTTGGGACCTTCTGAAAAA
............................................................................................((((((((...............)))))))).......(((((((((..........)))))))))............................................................................................
..........................................................................................91..................................................................................175.........................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR189786SRR343337SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR343336SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM532930(GSM532930)
G702T. (cervix)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343335SRR038860(GSM458543)
MM426. (cell line)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
......................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTTTGTCG......................................................................... 274.000.00--------4.00---------------------------------------------------------------------------------
......................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTTTGTGT......................................................................... 271.000.00-----------------------------------------------------1.00------------------------------------
.................................................................................................................................................CATTGGTTTTTTTTTTTCG...................................................................................... 191.000.00----------1.00-------------------------------------------------------------------------------
............................................................................................................................................................TTTTTTTTTTTTTTTTTGTCTCCG...................................................................... 241.000.00--------1.00---------------------------------------------------------------------------------
.................................................................................................................................................CATTGGTTTTTTTTTTTTTTTTTTCC............................................................................... 261.000.00--------------------------------------------1.00---------------------------------------------
..................................................................................................................................................ATTGGTTTTTTTTTTTTTTTTTTACCG............................................................................. 271.000.00-----------------------------------------------------------------------1.00------------------
......................................................................................................................................................GTTTTTTTTTTTTTTTTTTTTTTGGCCG........................................................................ 281.000.00---------------------------------------------------1.00--------------------------------------
........................................................................................................................................................................................................................AATATGTAAACAGCATTTGGCAA........... 231.000.00------------------------1.00-----------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTGTCTTGT...................................................................... 291.000.00--------1.00---------------------------------------------------------------------------------
.......................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTTGTCTTT....................................................................... 281.000.00--------1.00---------------------------------------------------------------------------------