| (2) BRAIN | (2) BREAST | (9) CELL-LINE | (1) CERVIX | (1) HEART | (4) HELA | (4) LIVER | (2) OTHER | (5) SKIN | (2) XRN.ip |
| CTCACGGATGCCGCATTGGTTACTCTTCACCACAGACTTTAGCAGATCAGGTAAGTTCAGTGTCTGTGACTTGAAATACTAAAAAATCATAGTGAATTGTAATGCATTTTTTTCAGTCAGTATGACAGTATATTGCGAGAGCGATGGTTCATTTTAAAATGAGCTTTAGCCTTTTAAGTGCTTCTTAGACTGTAAGTACATTAAAATAATTTATAATAGGCTTTTTGATCTAAGAATACCATTGAATTTTAAAAATAAGGATCACTTTATATGGATCACTTTTTCTTATTTTGTAGTCTTCAAAAATTAAAAAAGGAAGCAAAGGGGATACATCCATGTTGAAACC ..................................................(((....((((..((((((.((...........)).))))))...))))...)))................................................................................................................................................................................................................................................. ..................................................51.............................................................114...................................................................................................................................................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela) | SRR189784 | SRR390724(GSM850203) small rna immunoprecipitated. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189782 | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR444044(SRX128892) Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | SRR330913(SRX091751) tissue: normal skindisease state: normal. (skin) | SRR040029(GSM532914) G026T. (cervix) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR330923(SRX091761) tissue: normal skindisease state: normal. (skin) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037938(GSM510476) 293Red. (cell line) | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR191585(GSM715695) 196genomic small RNA (size selected RNA from . (breast) | SRR330893(SRX091731) tissue: skin psoriatic uninvolveddisease stat. (skin) | GSM450597(GSM450597) miRNA sequencing raw reads from post-mortem s. (brain) | SRR342896(SRX096792) small RNA seq of Right atrial tissue. (heart) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207119(GSM721081) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR015447(SRR015447) nuclear small RNAs. (breast) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................................................................................................................................TTTGATCTAAGAATACCATTGAATTTTAAAAATAAGGATCACTTTATATGGATCACTTTTTCTTATTTTGTAG.................................................. | 73 | 1 | 32.00 | 32.00 | 28.00 | 1.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................TTTTGATCTAAGAATACCATTGAATTTTAAAAATAAGGATCACTTTATATGGATCACTTTTTCTTATTTTGTAG.................................................. | 74 | 1 | 5.00 | 5.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................GGCTTTTTGATCTAAGAATACCATTGAATTTTAAAAATAAGGATCACTTTATATGGATCACTTTTTCTTATTTTGTAG.................................................. | 78 | 1 | 3.00 | 3.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................ACAGACTTTAGCAGATCAGTCT..................................................................................................................................................................................................................................................................................................... | 22 | 3.00 | 0.00 | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................CAGACTTTAGCAGATCAG........................................................................................................................................................................................................................................................................................................ | 18 | 1 | 3.00 | 3.00 | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...ACGGATGCCGCATTGGTTACT.................................................................................................................................................................................................................................................................................................................................. | 21 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................................................................................................................TGGATCACTTTTTCTTATTTTGTAGA................................................. | 26 | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................ATTGCGAGAGCGATG........................................................................................................................................................................................................ | 15 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................................................................................................................................GAAGCAAAGGGGATACA.............. | 17 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...........................................................................................GTGAATTGTAATGCATTGC............................................................................................................................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................................................................................................................ATTAAAAAAGGAAGCAAAGGGGATA................ | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ......................CTCTTCACCACAGACTTTAGCAGATCAG........................................................................................................................................................................................................................................................................................................ | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................CTTTTTGATCTAAGAATACCATTGAATTTTAAAAATAAGGATCACTTTATATGGATCACTTTTTCTTATTTTGTAG.................................................. | 76 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................TTATATGGATCACTTTTTCTTATTTTGTAGA................................................. | 31 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ................................CAGACTTTAGCAGATCAGTC...................................................................................................................................................................................................................................................................................................... | 20 | 1 | 1.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ..................................................GTAAGTTCAGTGTCTGTGACT................................................................................................................................................................................................................................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .......................TCTTCACCACAGACTTTAGCAGA............................................................................................................................................................................................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................CACCACAGACTTTAGCAGATCAGT....................................................................................................................................................................................................................................................................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............TTGGTTACTCTTCACCACAGACT.................................................................................................................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................CAGATCAGGTAAGTTCA............................................................................................................................................................................................................................................................................................... | 17 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| .....................ACTCTTCACCACAGACTTTAGCAGATCAGTCC..................................................................................................................................................................................................................................................................................................... | 32 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................................................................................ATCACTTTTTCTTATTTTTTTG.................................................. | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ..............ATTGGTTACTCTTCAGGC.......................................................................................................................................................................................................................................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................ACCACAGACTTTAGCAGATCAGT....................................................................................................................................................................................................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................................................TTTTTGATCTAAGAATACCATTGAATTTTAAAAATAAGGATCACTTTATATGGATCACTTTTTCTTATTTTGTAG.................................................. | 75 | 1 | 1.00 | 1.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................................................................................................................ATGGATCACTTTTTCTACTT........................................................ | 20 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................ACCACAGACTTTAGCAGA............................................................................................................................................................................................................................................................................................................ | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - |
| CTCACGGATGCCGCATTGGTTACTCTTCACCACAGACTTTAGCAGATCAGGTAAGTTCAGTGTCTGTGACTTGAAATACTAAAAAATCATAGTGAATTGTAATGCATTTTTTTCAGTCAGTATGACAGTATATTGCGAGAGCGATGGTTCATTTTAAAATGAGCTTTAGCCTTTTAAGTGCTTCTTAGACTGTAAGTACATTAAAATAATTTATAATAGGCTTTTTGATCTAAGAATACCATTGAATTTTAAAAATAAGGATCACTTTATATGGATCACTTTTTCTTATTTTGTAGTCTTCAAAAATTAAAAAAGGAAGCAAAGGGGATACATCCATGTTGAAACC ..................................................(((....((((..((((((.((...........)).))))))...))))...)))................................................................................................................................................................................................................................................. ..................................................51.............................................................114...................................................................................................................................................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela) | SRR189784 | SRR390724(GSM850203) small rna immunoprecipitated. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189782 | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR330902(SRX091740) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR444044(SRX128892) Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039620(GSM531983) HBV(+) Adjacent Tissue Sample 2. (liver) | SRR330913(SRX091751) tissue: normal skindisease state: normal. (skin) | SRR040029(GSM532914) G026T. (cervix) | SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line) | SRR330923(SRX091761) tissue: normal skindisease state: normal. (skin) | SRR037937(GSM510475) 293cand2. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR037938(GSM510476) 293Red. (cell line) | GSM450602(GSM450602) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR191585(GSM715695) 196genomic small RNA (size selected RNA from . (breast) | SRR330893(SRX091731) tissue: skin psoriatic uninvolveddisease stat. (skin) | GSM450597(GSM450597) miRNA sequencing raw reads from post-mortem s. (brain) | SRR342896(SRX096792) small RNA seq of Right atrial tissue. (heart) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207119(GSM721081) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver) | SRR015447(SRR015447) nuclear small RNAs. (breast) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................AGTTCAGTGTCTGTGCTG................................................................................................................................................................................................................................................................................... | 18 | 4.00 | 0.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ..........................................................................AATACTAAAAAATCAGGA.............................................................................................................................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTAAGTGCTTCTTAATG............................................................................................................................................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................................................................................................................................................................GGATACATCCATGTTAAA... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................................................................................................................ACATCCATGTTGAAATAA | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................TTTTTTCAGTCAGTATCCTG........................................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................................................CCATTGAATTTTAAAAATAGAAG..................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................AAATAATTTATAATAGATTT........................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................................................................................AAATAAGAAAAAGTGAT....................................................... | 17 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.12 |