ID: uc002vne.1_intron_12_0_chr2_223504415_r.5p
GENE: FARSB(4)
chr2:223505381-223505630-


(1)
BREAST
(16)
CELL-LINE
(2)
CERVIX
(1)
HEART
(4)
LIVER
(2)
OTHER
(1)
SKIN

Sense strand
AACGGGTAATGCCTGATGGAAAAATCCAGAAATTGATTATCACAGAAGAGGTAATAAGGACAAATTCTTATTTTTCTTTTAAAAATTTTCTTTTGTACATGTCTGTATAAAGTGGGGAGGAAAGAGAAACAAAGCTTACTCTTTTTTTTTTGTTTTGAGACAGGGTCTGGCTCTTTTGCCCAGACTGGAATGCAGTGGTGCAGTCTTGGCTCACTGCAACCTCTGCTTCCCAGGCTCAAGTGATCCTCCC
........................................................((((((((......((((((((((.....((((((((((((((....))))))))).))))).)))))))))).((((......))))....))))))))..............................................................................................
..................................................51.......................................................................................................156............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040009(GSM532894)
G727T. (cervix)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
......................................................................................................................................CTTACTCTTTTTTTTTTG..................................................................................................18510.8010.80--3.802.802.801.40-----------------------
...........................................................ACAAATTCTTATTTTTCTTTTG.........................................................................................................................................................................225.000.00--1.001.002.001.00-----------------------
......................................................................................................................................CTTACTCTTTTTTTTTTCTTG...............................................................................................215.000.00--4.00-1.00------------------------
..............................................................................................................................................................................................TGCAGTGGTGCAGTCTTGGCTCACGTC.................................273.000.00-3.00---------------------------
..........................................................................................................................................................TTGAGACAGGGTCTGGCTCTTTTGCCGG....................................................................282.000.00-2.00---------------------------
..........................................................................................................................................................................................................................ACCTCTGCTTCCCAGGCTCAGGCG........242.000.002.00----------------------------
.............................................................................................................................................................AGACAGGGTCTGGCTCTCCCC........................................................................212.000.00-2.00---------------------------
............................................................CAAATTCTTATTTTTAGTG...........................................................................................................................................................................192.000.00------2.00----------------------
......................................................................................................................................CTTACTCTTTTTTTTTTAAAG...............................................................................................212.000.00---2.00-------------------------
.............................................................................................................................................................AGACAGGGTCTGGCTCTCCT.........................................................................201.000.001.00----------------------------
.........................................................................................................................................................................................................AGTCTTGGCTCACTGCAATA.............................201.000.00--------------------------1.00--
...............................................................................................................................................................................TTGCCCAGACTGGAATGCAGTGAA...................................................241.000.00--------------------1.00--------
.....................................................................................................................................................................................AGACTGGAATGCAGTCGCA..................................................191.000.00---------------1.00-------------
......................................................................................................................................CTTACTCTTTTTTTTTTCTG................................................................................................201.000.00----1.00------------------------
....................................................................................................................................AGCTTACTCTTTTTTTTTTTTTG...............................................................................................231.000.00---1.00-------------------------
................................................................................................................................................TTTTTTTGTTTTGAGACAGGGAGTG.................................................................................251.000.00-1.00---------------------------
...............................................................................................................................................................................TTGCCCAGACTGGAATGCAGTGAAG..................................................251.000.00-------------------------1.00---
............................GAAATTGATTATCACAGAAGAGAC......................................................................................................................................................................................................241.000.00-------------1.00---------------
......................................................................................................................................CTTACTCTTTTTTTTTTATAT...............................................................................................211.000.00-----1.00-----------------------
.......................................................................................................................................................GTTTTGAGACAGGGTAGT.................................................................................181.000.00----------------1.00------------
..........................................................................................................................................CTCTTTTTTTTTTGTTTTTCC...........................................................................................211.000.001.00----------------------------
....................................................................................................................................................................................................................ACTGCAACCTCTGCTTCCCAGGCTCAGGCG........301.000.00-1.00---------------------------
.........................................................................................................................................ACTCTTTTTTTTTTGTTTAAG............................................................................................211.000.00-1.00---------------------------
....................................................................................................................................................................................CAGACTGGAATGCAGTGGTA..................................................201.000.00-----------------------1.00-----
....................................................................................................................................................................................................................ACTGCAACCTCTGCTTCCCAGCCTC.............251.000.001.00----------------------------
........................................................................................................................................TACTCTTTTTTTTTTGATGG..............................................................................................201.000.001.00----------------------------
.....................................................................................................................................................................................AGACTGGAATGCAGTGGTGCAAAG.............................................241.000.00---------------------1.00-------
..........................................................................................................................................................................................................GTCTTGGCTCACTGCAATCTC...........................211.000.00--------1.00--------------------
..................................................................................................................................................................................................................TCACTGCAACCTCTGCTTCCGACG................241.000.00------------------1.00----------
.........................................................................................................................................ACTCTTTTTTTTTTGTTCGAG............................................................................................211.000.001.00----------------------------
..............................................................................................................................................TTTTTTTTTGTTTTGAGGCTG.......................................................................................211.000.001.00----------------------------
.....................................................................................................................................................................................................GTGCAGTCTTGGCTCACCCC.................................201.000.00-------1.00---------------------
......................................................................................................................................CTTACTCTTTTTTTTTTCCTG...............................................................................................211.000.00--1.00--------------------------
...............................................................ATTCTTATTTTTCTTTTACTG......................................................................................................................................................................211.000.00--1.00--------------------------
..................................................................................................................................................................................CCCAGACTGGAATGCAG.......................................................1701.001.00----------1.00------------------
...............................................................................................................................................................ACAGGGTCTGGCTCTCCT.........................................................................181.000.00-1.00---------------------------
.........................................................................................................................................................................................................................AACCTCTGCTTCCCAGGCTCGGGC.........241.000.001.00----------------------------
.............................AAATTGATTATCACAGAAGAGACA.....................................................................................................................................................................................................241.000.00-----------------1.00-----------
.......................................................................................................................................................................................................................GCAACCTCTGCTTCCCAGGAATA............231.000.00----------------------------1.00
..........................................................................................................................................CTCTTTTTTTTTTGTTTTTTC...........................................................................................211.000.001.00----------------------------
.......................................................................................................................................TTACTCTTTTTTTTTTGACGG..............................................................................................211.000.00-1.00---------------------------
.....................................................................................................................................................................................................GTGCAGTCTTGGCTCACTGAA................................211.000.00------------------------1.00----
.........................................................................................................................................ACTCTTTTTTTTTTGTGGTT.............................................................................................201.000.001.00----------------------------
..........................................................................................................................................CTCTTTTTTTTTTGTTTAGTG...........................................................................................211.000.00------------1.00----------------
.........................................................................................................................................ACTCTTTTTTTTTTGGGGG..............................................................................................191.000.001.00----------------------------
..........................................................................................................................................CTCTTTTTTTTTTGTTTTTGG...........................................................................................211.000.00-----1.00-----------------------
.........................................................................................................................................ACTCTTTTTTTTTTGTTTTCGCC..........................................................................................231.000.001.00----------------------------
........................................................................................................................................TACTCTTTTTTTTTTGTTTTTTT...........................................................................................231.000.00-1.00---------------------------

Antisense strand
AACGGGTAATGCCTGATGGAAAAATCCAGAAATTGATTATCACAGAAGAGGTAATAAGGACAAATTCTTATTTTTCTTTTAAAAATTTTCTTTTGTACATGTCTGTATAAAGTGGGGAGGAAAGAGAAACAAAGCTTACTCTTTTTTTTTTGTTTTGAGACAGGGTCTGGCTCTTTTGCCCAGACTGGAATGCAGTGGTGCAGTCTTGGCTCACTGCAACCTCTGCTTCCCAGGCTCAAGTGATCCTCCC
........................................................((((((((......((((((((((.....((((((((((((((....))))))))).))))).)))))))))).((((......))))....))))))))..............................................................................................
..................................................51.......................................................................................................156............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040009(GSM532894)
G727T. (cervix)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
.........TGCCTGATGGAAAAATCGGG............................................................................................................................................................................................................................. 202.000.002.00----------------------------
..................................................................................................................................................................................................................TCACTGCAACCTCTGCTTCCCATTTT.............. 261.000.00---------------------------1.00-
..........................................................................................................................................................................................................................ACCTCTGCTTCCCAGGCTCAGCAG........ 241.000.001.00----------------------------
........................................................................................................................................................................................CTGGAATGCAGTGGTGCAGTCCGG.......................................... 241.000.001.00----------------------------
........................................................................................................................................TACTCTTTTTTTTTTGCTA............................................................................................... 191.000.00-----------1.00-----------------
..........................CAGAAATTGATTATCACAA............................................................................................................................................................................................................. 191.000.00-------1.00---------------------
........................................................................................................................................TACTCTTTTTTTTTTGCCC............................................................................................... 191.000.00-------------------1.00---------
............CTGATGGAAAAATCCATGG........................................................................................................................................................................................................................... 191.000.00---------1.00-------------------
.............TGATGGAAAAATCCATTGG.......................................................................................................................................................................................................................... 191.000.00---------1.00-------------------
.................................................................................................................................................................................................................................CTTCCCAGGCTCAAGTGATCCTCCTCAA 281.000.00----------1.00------------------
......................................................................................................................GGAAAGAGAAACAAAGCTATTA.............................................................................................................. 221.000.00----------------------1.00------
........................................................................................................................................TACTCTTTTTTTTTTGTCCA.............................................................................................. 201.000.00------1.00----------------------
.........................................................................................................................AAGAGAAACAAAGCTGGCG.............................................................................................................. 191.000.00------------1.00----------------
.................................................................................................................................................................................................................................CTTCCCAGGCTCAAGTGATCCTCCTGGA 281.000.00--------1.00--------------------
........................................................................................................................................TACTCTTTTTTTTTTGCCA............................................................................................... 191.000.00-----------1.00-----------------
...............................................................................................................GTGGGGAGGAAAGAGAACCAG...................................................................................................................... 211.000.00--------------1.00--------------