ID: uc002vkd.1_intron_9_0_chr2_220089935_r
GENE: ATG9A(2)
chr2:220089885-220090182-


(5)
B-CELL 		(3)
BRAIN 		(3)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(4)
HELA 		(6)
LIVER 		(2)
OTHER 		(13)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AAGGTCACTCTGCCAGACGCCTTTTTGCCTGCTCAAGTCTGTAGTGCCAGGTAAGGGCTGCAAGTCAAGAGGACACCATAGCCTTGAGTTCTGCTAGCAGGTGGGTAATAGAGTGGAGTCTGAGGCAGCAACTCATACTCCAGAACTGACTCAGGCTTGGTCTAGCAAAAATACTTCAGGATAGCAGCGTCTCTGCCAAGACTCCTTCCTCGAGGGCCACCTCTCCTCCCCTTCTTTTTCCCCACCAGGATTCAGGAAAATGGCTCCCTTATCACCATCCTGGTCATTGCTGGTGTCT
........................................................(((((...((....((((.((((.((((.....((((....)))).))))......)))).)))))).))))).........................................................................................................................................................................
..................................................51...............................................................................132....................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR038856(GSM458539)
D11. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR040009(GSM532894)
G727T. (cervix)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
......................................................................................................................................................................................................................................................AGGATTCAGGAAAATGGCT.................................1916.006.00---1.00---------2.00----------------1.00--1.00------1.00---------------
.........................................................................................................TAATAGAGTGGAGTCTGAGGCAG..........................................................................................................................................................................2314.004.00----4.00---------------------------------------------------
...........................................................................................................ATAGAGTGGAGTCTGAGGCAGCAT.......................................................................................................................................................................2413.002.00---------------1.00------1.00----------------1.00----------------
..................................................GTAAGGGCTGCAAGTCAAGAGGACACC.............................................................................................................................................................................................................................2713.003.00--2.00--------1.00--------------------------------------------
...........................................................................................................ATAGAGTGGAGTCTGAGGCAGCA........................................................................................................................................................................2312.002.00--------------1.001.00----------------------------------------
....................................................................................................................AGTCTGAGGCAGCAACTCATACT...............................................................................................................................................................2312.002.002.00-------------------------------------------------------
............................................................................................GCTAGCAGGTGGGTAATAGAGTG.......................................................................................................................................................................................2312.002.002.00-------------------------------------------------------
..................................................GTAAGGGCTGCAAGTCAAGAGGACA...............................................................................................................................................................................................................................2512.002.00------------------------------------1.00----------1.00--------
...........................................................................................................................................................................................................................................................TCAGGAAAATGGCTCCCTTAT..........................2112.002.00----------2.00---------------------------------------------
.AGGTCACTCTGCCAGACG.......................................................................................................................................................................................................................................................................................1812.002.00-------2.00------------------------------------------------
..................................................GTAAGGGCTGCAAGTCAAG.....................................................................................................................................................................................................................................1912.002.00------1.00--------------------------------------1.00----------
....................................................................................................................................................................................................................................................CCAGGATTCAGGAAAATGGCTCC...............................2312.002.00----------------------------------1.00-----------1.00---------
.AGGTCACTCTGCCAGACGCC.....................................................................................................................................................................................................................................................................................2012.002.001.001.00------------------------------------------------------
..................................................GTAAGGGCTGCAAGTCAAGAGGACACCATAGCCTTGAGTTCTGCTAGCAGGTGGGTAATAGAGTGGAGTCTGAGGCAGC.........................................................................................................................................................................7912.002.00----------------2.00---------------------------------------
.................................CAAGTCTGTAGTGCCAG........................................................................................................................................................................................................................................................1732.002.00---------1.00---------0.33---------------------------------0.67--
......................................................................................................................................................................................................................................................AGGATTCAGGAAAATGGCTCC...............................2112.002.00------------2.00-------------------------------------------
...........................................................................................................ATAGAGTGGAGTCTGAGGCAGC.........................................................................................................................................................................2212.002.00-------------------------------1.00------1.00-----------------
................................................................................................................................................ACTGACTCAGGCTTGGT.........................................................................................................................................1721.501.50---------1.50----------------------------------------------
.............................................................................................CTAGCAGGTGGGTAATAGAGTGGAGTCTGA...............................................................................................................................................................................3011.001.00--1.00-----------------------------------------------------
...........................................................................................................................................................................................................................................................................CTTATCACCATCCTGAG..............171.000.00------1.00-------------------------------------------------
.................................................................................................................................................CTGACTCAGGCTTGGTCTAGC....................................................................................................................................2111.001.00--------------------------1.00-----------------------------
.................................................................................................CAGGTGGGTAATAGAGTGGAGTCTG................................................................................................................................................................................2511.001.00------------------------------------------------1.00-------
................................................................................................................................................................................................CTGCCAAGACTCCTTCATG.......................................................................................191.000.00-1.00------------------------------------------------------
.....................................................................................................................................................................................................................................................CAGGATTCAGGAAAATGGCT.................................2011.001.00-----1.00--------------------------------------------------
......ACTCTGCCAGACGCCTTTTTGC..............................................................................................................................................................................................................................................................................2211.001.00---------------------1.00----------------------------------
.............................TGCTCAAGTCTGTAGTGCCAGGAT.....................................................................................................................................................................................................................................................241.000.00--1.00-----------------------------------------------------
.................................................................................................................................................................................................................................................CCACCAGGATTCAGGAAAATGGCTCCC..............................2711.001.00------------------------------------------1.00-------------
..................................................GTAAGGGCTGCAAGTCAAGAG...................................................................................................................................................................................................................................2111.001.00--1.00-----------------------------------------------------
..............AGACGCCTTTTTGCCTGCT.........................................................................................................................................................................................................................................................................1911.001.00-1.00------------------------------------------------------
.............................................................................................................................................................................................................................................................AGGAAAATGGCTCCCTTA...........................1811.001.00-----------------------------1.00--------------------------
......................................................................................................................................................TCAGGCTTGGTCTAGAAG..................................................................................................................................181.000.00--------------------------------------------------1.00-----
.....................................................................................................TGGGTAATAGAGTGGAGTCTGAGGCAGC.........................................................................................................................................................................2811.001.00--------1.00-----------------------------------------------
..........................................................................................................AATAGAGTGGAGTCTGAGGCA...........................................................................................................................................................................2111.001.00------------------------1.00-------------------------------
.AGGTCACTCTGCCAGACGCCTTTTTGC..............................................................................................................................................................................................................................................................................2711.001.001.00-------------------------------------------------------
.......................................................................................................................................................................................................................................TTCTTTTTCCCCACCCACT................................................191.000.00----------------------------------------------------1.00---
....................................................AAGGGCTGCAAGTCAAGAGGACACCATAG.........................................................................................................................................................................................................................2911.001.00-----------1.00--------------------------------------------
............CCAGACGCCTTTTTGCCTGCTCAA......................................................................................................................................................................................................................................................................2411.001.00---1.00----------------------------------------------------
.......................................................................................................................................................................................................................................................GGATTCAGGAAAATGGCTCCC..............................2111.001.00-----------------------1.00--------------------------------
...GTCACTCTGCCAGACGCCT....................................................................................................................................................................................................................................................................................1911.001.00---1.00----------------------------------------------------
.........................................................................................................TAATAGAGTGGAGTCTGAGGCAGCA........................................................................................................................................................................2511.001.00---------------------------1.00----------------------------
.............................................................................................................AGAGTGGAGTCTGAGGCAG..........................................................................................................................................................................1921.001.00-----------------0.500.50-------------------------------------
.................................................................................................................TGGAGTCTGAGGCAGCAAC......................................................................................................................................................................1911.001.00-------------------------------------1.00------------------
......................................................................................................................................................................................................................................................AGGATTCAGGAAAATGGCTT................................2011.006.00-------------------------------------------1.00------------
...GTCACTCTGCCAGACGC......................................................................................................................................................................................................................................................................................1711.001.00--------------------------------1.00-----------------------
............................................................................................................................................................................................................................................................CAGGAAAATGGCTCCCTTA...........................1911.001.001.00-------------------------------------------------------
.AGGTCACTCTGCCAGACGCCTTT..................................................................................................................................................................................................................................................................................2311.001.00-1.00------------------------------------------------------
........................................................GCTGCAAGTCAAGAGGACACCAT...........................................................................................................................................................................................................................2311.001.001.00-------------------------------------------------------
................................................................................................................................................................................CAGGATAGCAGCGTCTCT........................................................................................................1811.001.00-------------------------------------------------1.00------
...............................................................................................................AGTGGAGTCTGAGGCAGCA........................................................................................................................................................................1911.001.001.00-------------------------------------------------------
..................................AAGTCTGTAGTGCCAGGATTC...................................................................................................................................................................................................................................................211.000.00------------------1.00-------------------------------------
..............AGACGCCTTTTTGCCTGCTC........................................................................................................................................................................................................................................................................2011.001.00-1.00------------------------------------------------------
...............................................................................................................AGTGGAGTCTGAGGCAGC.........................................................................................................................................................................1811.001.00-----------------------------------------1.00--------------
.............................................................................................................AGAGTGGAGTCTGAGGCAGCAA.......................................................................................................................................................................2211.001.00-----1.00--------------------------------------------------
.AGGTCACTCTGCCAGACGC......................................................................................................................................................................................................................................................................................1911.001.00--------1.00-----------------------------------------------
.....................................................................AGGACACCATAGCCTTGAGTT................................................................................................................................................................................................................2111.001.00-------------------------1.00------------------------------
......................................................................................................GGGTAATAGAGTGGAGTCTGT...............................................................................................................................................................................211.000.00---------------------------------------------------1.00----
......................................................GGGCTGCAAGTCAAGGGGG.................................................................................................................................................................................................................................191.000.00------1.00-------------------------------------------------
.AGGTCACTCTGCCAGACGCCT....................................................................................................................................................................................................................................................................................2111.001.00--------------1.00-----------------------------------------
..................................................GTAAGGGCTGCAAGTCAAGA....................................................................................................................................................................................................................................2011.001.00-------1.00------------------------------------------------
........................................................................................................................................................................................................................CCACCTCTCCTCCCCGCGC...............................................................191.000.00--------------------1.00-----------------------------------
..............................................................................................TAGCAGGTGGGTAATATTG.........................................................................................................................................................................................191.000.00------1.00-------------------------------------------------
....................................................................................................................................TCATACTCCAGAACTGACTCAGGCTTGGTCT.......................................................................................................................................3111.001.00-------------------1.00------------------------------------
............................................................................................................................................CAGAACTGACTCAGGCTTGGTCTAGC....................................................................................................................................2611.001.00-----------------1.00--------------------------------------
..................................................GTAAGGGCTGCAAGTCAAGAGGACACCATAG.........................................................................................................................................................................................................................3111.001.00-------1.00------------------------------------------------
..............................GCTCAAGTCTGTAGTGCCAGGATT....................................................................................................................................................................................................................................................241.000.00-----------------------------------1.00--------------------
......................................................................................................................................ATACTCCAGAACTGAC....................................................................................................................................................1630.330.33------------------------------------------------------0.33-

Antisense strand
AAGGTCACTCTGCCAGACGCCTTTTTGCCTGCTCAAGTCTGTAGTGCCAGGTAAGGGCTGCAAGTCAAGAGGACACCATAGCCTTGAGTTCTGCTAGCAGGTGGGTAATAGAGTGGAGTCTGAGGCAGCAACTCATACTCCAGAACTGACTCAGGCTTGGTCTAGCAAAAATACTTCAGGATAGCAGCGTCTCTGCCAAGACTCCTTCCTCGAGGGCCACCTCTCCTCCCCTTCTTTTTCCCCACCAGGATTCAGGAAAATGGCTCCCTTATCACCATCCTGGTCATTGCTGGTGTCT
........................................................(((((...((....((((.((((.((((.....((((....)))).))))......)))).)))))).))))).........................................................................................................................................................................
..................................................51...............................................................................132....................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR038856(GSM458539)
D11. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR040009(GSM532894)
G727T. (cervix)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR038857(GSM458540)
D20. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
....................................................................................................................................................................................................CTCGAGGAAGGAGTCTTG.................................................................................... 1811.001.00--------------------------------------------1.00-----------
.................................................................................CCTTGAGTTCTGCTAATG....................................................................................................................................................................................................... 181.000.00----------------------------1.00---------------------------
.............................................................................................................................................................................................................................TCTCCTCCCCTTCTTTTTCG......................................................... 201.000.00-----1.00--------------------------------------------------
..................TACAGACTTGAGCAGGCAAAAAGGC............................................................................................................................................................................................................................................................... 2511.001.00--------1.00-----------------------------------------------
...............................................................................................................................................................................................................................GGAAAAAGAAGGGGAGGA......................................................... 1840.250.25-------------------------------------------------------0.25