ID: uc002vij.1_intron_7_0_chr2_219494387_f.3p
GENE: (8)
chr2:219495173-219495422+


(6)
BRAIN 		(9)
BREAST 		(6)
CELL-LINE 		(1)
FIBROBLAST 		(4)
HEART 		(1)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(4)
SKIN 		(1)
UTERUS

Sense strand
TTTAGATGTGGGCAGTGTCGCAGGCATGGGCCTCAGACCCAGCAAGATCTCACTGAATCCTATAATGGAGTTGGAAGAGTTTAGTGATCAGGGTACTCATCTGAGTGAGTAAGTAGGGAGGCCTAGGAAGCGGGTACTTGAAGAAGTAGGTTGCAGTGTTTTAGAACTCTGAATCCATTGTTCCCTCCCCTCACCACCAGACATCAGACTACCCAGTCATCTTGTCCCTGGAGACCCACTGCAGCTGGGA
.............................................................................................(((((((....)))))))..((((....))))....((((.(((((....)))))..))))................................................................................................
............................................................................................93.................................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782TAX577743(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		SRR189784TAX577580(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
..........................................................................................................................................TGAAGAAGTAGGTTGTAT..............................................................................................187.000.001.001.00-1.001.00---1.00-------------------1.001.00-----
..........................................................................................................................................TGAAGAAGTAGGTTGCATAGT...........................................................................................2116.002.00--3.00------------1.00----1.00--1.00-----------
..........................................................................................................................................TGAAGAAGTAGGTTGTATA.............................................................................................195.000.00-1.00--1.00---1.001.00-------1.00-----------------
..........................................................................................................................................TGAAGAAGTAGGTTGCATAG............................................................................................2014.002.003.00------1.00---------------------------
..........................................................................................................................................TGAAGAAGTAGGTTGCAGAGAT..........................................................................................2213.001.00------2.00-------1.00--------------------
..........................................................................................................................................TGAAGAAGTAGGTTGCA...............................................................................................1712.002.00-1.00-1.00-------------------------------
..........................................................................................................................................TGAAGAAGTAGGTTGTG...............................................................................................172.000.00-1.00--1.00------------------------------
..........................................................................................................................................TGAAGAAGTAGGTTGCACAGT...........................................................................................2112.002.00---------1.00------1.00------------------
..........................................................................................................................................TGAAGAAGTAGGTTGTGTG.............................................................................................192.000.00-1.00--------1.00------------------------
..........................................................................................................................................TGAAGAAGTAGGTTGCATA.............................................................................................1912.002.001.00--1.00-------------------------------
........................................................................................................................................................GCAGTGTTTTAGAACTCTG...............................................................................1911.001.00------------------------------1.00----
..........................................................................................................................................TGAAGAAGTAGGTTGCACAC............................................................................................2011.002.001.00----------------------------------
..........................................................................................................................................TGAAGAAGTAGGTTGCGTGG............................................................................................201.000.00----------1.00------------------------
.........................................................................................................................................................................................................................................ACCCACTGCAGCTGGGGAC191.000.00------------------------1.00----------
........................................AGCAAGATCTCACTGAATCAG.............................................................................................................................................................................................211.000.00-----1.00-----------------------------
..........................................................................................................................................TGAAGAAGTAGGTTGCAG..............................................................................................1811.001.00--1.00--------------------------------
..........................................................................................................................................TGAAGAAGTAGGTTGCGT..............................................................................................181.000.00-1.00---------------------------------
..........................................................................................................................................TGAAGAAGTAGGTTGCAGGGAG..........................................................................................2211.001.00---1.00-------------------------------
..........................................................................................................................................TGAAGAAGTAGGTTGTGCG.............................................................................................191.000.00----1.00------------------------------
.................................................................................................CATCTGAGTGAGTAAGTAGGGAGGC................................................................................................................................2511.001.00---------------------------1.00-------
..........................................................................................................................................TGAAGAAGTAGGTTGTAG..............................................................................................181.000.001.00----------------------------------
..........................................................................................................................................TGAAGAAGTAGGTTGCAGAGT...........................................................................................2111.001.001.00----------------------------------
.........................................................................................................................................................CAGTGTTTTAGAACTCTG...............................................................................1811.001.00-------------------------------1.00---
...........................................................................................................................................................GTGTTTTAGAACTCTAA..............................................................................171.000.00----------------------1.00------------
..........................................................................................................................................TGAAGAAGTAGGTTGCAGAGGT..........................................................................................2211.001.00-------------------------1.00---------
..........................................................................................................................................TGAAGAAGTAGGTTGCAGGG............................................................................................2011.001.00-------------1.00---------------------
...........................................................................AGAGTTTAGTGATCAACA.............................................................................................................................................................181.000.00--------------------------1.00--------
..........................................................................................................................................TGAAGAAGTAGGTTGCTTAG............................................................................................201.000.00-1.00---------------------------------
..........................................................................................................................................TGAAGAAGTAGGTTGCGTA.............................................................................................191.000.00--1.00--------------------------------
..........................................................................................................................................TGAAGAAGTAGGTTGCAGGGAA..........................................................................................2211.001.00-----1.00-----------------------------
..........................................................................................................................................TGAAGAAGTAGGTTGCATAGA...........................................................................................2111.002.00-1.00---------------------------------
..........................................................................................................................................TGAAGAAGTAGGTTGCAGCGTT..........................................................................................2211.001.00-------1.00---------------------------
..........................................................................................................................................TGAAGAAGTAGGTTGCATGGA...........................................................................................2111.002.00-------------------1.00---------------
..........................................................................................................GAGTAAGTAGGGAGGC................................................................................................................................1620.500.50--------------------------------0.50--
...........................................................................................................................................................GTGTTTTAGAACTCTG...............................................................................1630.330.33---------------------------------0.33-
.........................................................................................AGGGTACTCATCTGA..................................................................................................................................................1560.170.17----------------------------------0.17

Antisense strand
TTTAGATGTGGGCAGTGTCGCAGGCATGGGCCTCAGACCCAGCAAGATCTCACTGAATCCTATAATGGAGTTGGAAGAGTTTAGTGATCAGGGTACTCATCTGAGTGAGTAAGTAGGGAGGCCTAGGAAGCGGGTACTTGAAGAAGTAGGTTGCAGTGTTTTAGAACTCTGAATCCATTGTTCCCTCCCCTCACCACCAGACATCAGACTACCCAGTCATCTTGTCCCTGGAGACCCACTGCAGCTGGGA
.............................................................................................(((((((....)))))))..((((....))))....((((.(((((....)))))..))))................................................................................................
............................................................................................93.................................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782TAX577743(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577740(Rovira)
total RNA. (breast)		SRR189784TAX577580(Rovira)
total RNA. (breast)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR029126(GSM416755)
143B. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
..............................................................................................................................................................TTTTAGAACTCTGAATAC.......................................................................... 182.000.00-----------2.00-----------------------
.............................................................................................................................................................GTTTTAGAACTCTGACGCG.......................................................................... 191.000.00------------1.00----------------------
.........................ATGGGCCTCAGACCCAGCCAG............................................................................................................................................................................................................ 211.000.001.00----------------------------------
................................................................................................................CTTCCTAGGCCTCCCTAC........................................................................................................................ 1811.001.00------------------1.00----------------
..............................................................................................................................................GAAGTAGGTTGCAGTCCG.......................................................................................... 181.000.001.00----------------------------------