ID: uc002vaz.3_intron_5_0_chr2_206893060_r.5p
GENE: (5)
chr2:206911028-206911277-


(2)
B-CELL
(1)
BREAST
(13)
CELL-LINE
(1)
HEART
(1)
HELA
(1)
LIVER
(1)
OTHER
(2)
SKIN

Sense strand
TACCAGGTTGCATGGTCCATCCGGGAAACCCTCAGATATCAAAGACATGCGTAAGTCTTCTGTTCTGTTTTTATTCTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTTACTGCCACCAAGCCTGACTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTTTTGAACTCCTGATCTCAAGTGATCTCTCCGCCT
........................................................................................(((((((.....)))))))...((((((((...(((((((..((....))..)))))))..))).)))))............................................................................................
.................................................................66.......................................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
TAX577746(Rovira)
total RNA. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................................TTATTCTTTTTTTTTTGGTT................................................................................................................................................................2055.000.0051.004.00--------------------
.......................................................................TATTCTTTTTTTTTTGGTT................................................................................................................................................................1915.000.0012.003.00--------------------
......................................................................TTATTCTTTTTTTTTTGGTC................................................................................................................................................................203.000.003.00---------------------
........................................................................................................................................................................................................TGTTGGCCAGGCTGGTTTTGAACCCTG.......................272.000.001.00----------------1.00----
...........................................................................................................................................................................................................TGGCCAGGCTGGTTTTGAACTCCGACC....................272.000.002.00---------------------
.........................................................................................ACGGAGTCTCGCTCTGTCACCCAGGCTGGTGC.................................................................................................................................322.000.002.00---------------------
..............................................................................................................................................................................................................CCAGGCTGGTTTTGAACTCCGGC.....................232.000.002.00---------------------
................CCATCCGGGAAACCCTCA........................................................................................................................................................................................................................1812.002.00---------1.001.00-----------
.........................................................................................ACGGAGTCTCGCTCTGTCACCCAGGGCGG....................................................................................................................................292.000.002.00---------------------
...................................................................TTTTTATTCTTTTTTTTGTGG..................................................................................................................................................................211.000.001.00---------------------
....................................................................TTTTATTCTTTTTTTTTTATTG................................................................................................................................................................221.000.00------1.00---------------
.........................................................................TTCTTTTTTTTTTGAGACGGAGGAC........................................................................................................................................................251.000.001.00---------------------
...................................................................................................................................................................................AGTAGAGATGGGGTTTCACCATGGCCC............................................271.000.001.00---------------------
...........................................................................................................................................................................................................TGGCCAGGCTGGTTTTCCAC...........................201.000.00-1.00--------------------
................................................................................................................................................TGCCACCAAGCCTGACTAACTTT...................................................................................231.000.00-1.00--------------------
..................................................................................................................CTGGAGTGCAGTGGTGTGATCTCACCCA............................................................................................................281.000.001.00---------------------
.......................................................................................AGACGGAGTCTCGCTCTGTCACCCGGAG.......................................................................................................................................281.000.001.00---------------------
........................................................................ATTCTTTTTTTTTTGAGACGGAGTCCTGC.....................................................................................................................................................291.000.001.00---------------------
....................................................................TTTTATTCTTTTTTTTTTACG.................................................................................................................................................................211.000.00------1.00---------------
..................................................................................................................................................CCACCAAGCCTGACTAATTTTTCTTG..............................................................................261.000.00---------------------1.00
.......................................................................................................................................................................................................ATGTTGGCCAGGCTGGTTTTGAACTCCGAAA....................311.000.00---------------1.00------
.....................CGGGAAACCCTCAGATA....................................................................................................................................................................................................................1711.001.00----------------1.00-----
.......................................................................................................................................................................................................ATGTTGGCCAGGCTGGTTTTGAACTCCCCG.....................301.000.00-1.00--------------------
.......................................................................TATTCTTTTTTTTTTGAGACGGAGTCTCACTG...................................................................................................................................................321.000.00----1.00-----------------
........................................................................ATTCTTTTTTTTTTGAGCTGG.............................................................................................................................................................211.000.001.00---------------------
........................................................................ATTCTTTTTTTTTTGAGACGGACTC.........................................................................................................................................................251.000.001.00---------------------
......................................................................TTATTCTTTTTTTTTTGAGTATA.............................................................................................................................................................231.000.00--------------------1.00-
.......................................................................................................................................................................................................ATGTTGGCCAGGCTGGTTTTGAACTCCGAGC....................311.000.001.00---------------------
.........................................................................TTCTTTTTTTTTTGAGACGGCGGC.........................................................................................................................................................241.000.001.00---------------------
............................................................................TTTTTTTTTTGAGACGGAGTCTCGCGGTG.................................................................................................................................................291.000.00-1.00--------------------
.....................CGGGAAACCCTCAGATATCAAAGAC............................................................................................................................................................................................................2511.001.00------------------1.00---
.........................................................................................................................................................................................................GTTGGCCAGGCTGGTTTTGAAAAAA........................251.000.00--------------1.00-------
...................................................................TTTTTATTCTTTTTTTTTTGCAGC...............................................................................................................................................................241.000.00-1.00--------------------
...................................................................................TTTGAGACGGAGTCTCGCGCCG.................................................................................................................................................221.000.001.00---------------------
......................................................................TTATTCTTTTTTTTTTGGGGA...............................................................................................................................................................211.000.001.00---------------------
.......................................................................................................................................................................................................ATGTTGGCCAGGCTGGTTCTA..............................211.000.00------------1.00---------
.....................................................................................................................................................................TTTTTTGTATTTTTAGTAGAGATGGGGTACC......................................................311.000.00-1.00--------------------
....................................................................TTTTATTCTTTTTTTTTTGTAGA...............................................................................................................................................................231.000.00-1.00--------------------
.........................................................................................................................................................................................................................TTGAACTCCTGATCTCAAGTAGAG.........241.000.00--------1.00-------------
.....................................................................TTTATTCTTTTTTTTTTGCG.................................................................................................................................................................201.000.001.00---------------------
.......................................................................................AGACGGAGTCTCGCTCTGTCACCCTGAC.......................................................................................................................................281.000.00-1.00--------------------
..............................................................................................................................................................ACTAATTTTTTTTGTCTCT.........................................................................191.000.00----1.00-----------------
........................................................................ATTCTTTTTTTTTTGAGACTGC............................................................................................................................................................221.000.001.00---------------------
..........................................................................TCTTTTTTTTTTGAGACGGAGGACG.......................................................................................................................................................251.000.001.00---------------------
.......................................................................TATTCTTTTTTTTTTGAGCTGG.............................................................................................................................................................221.000.00-1.00--------------------
..................................................................................TTTTGAGACGGAGTCTCGCGCA..................................................................................................................................................221.000.00-1.00--------------------
.......................................................................TATTCTTTTTTTTTTGGGGA...............................................................................................................................................................201.000.001.00---------------------
..................................................................................................................................................CCACCAAGCCTGACTAACAT....................................................................................201.000.00----1.00-----------------
.......................................................................................................................................................................................................ATGTTGGCCAGGCTGGTTTTGAACTCCGAA.....................301.000.00-------------------1.00--
...........ATGGTCCATCCGGGAAACCCT..........................................................................................................................................................................................................................2111.001.00-----1.00----------------
........................................................................................................................................................................................................TGTTGGCCAGGCTGGTTTTCTAC...........................231.000.00-1.00--------------------
...................................................................TTTTTATTCTTTTTTTTTTGAGACGG.............................................................................................................................................................2620.500.500.50---------------------
.....................................................................TTTATTCTTTTTTTTTTGAGACGG.............................................................................................................................................................2490.110.11-0.11--------------------

Antisense strand
TACCAGGTTGCATGGTCCATCCGGGAAACCCTCAGATATCAAAGACATGCGTAAGTCTTCTGTTCTGTTTTTATTCTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTTACTGCCACCAAGCCTGACTAATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTTTTGAACTCCTGATCTCAAGTGATCTCTCCGCCT
........................................................................................(((((((.....)))))))...((((((((...(((((((..((....))..)))))))..))).)))))............................................................................................
.................................................................66.......................................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)
SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
TAX577746(Rovira)
total RNA. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................................................................................................................GGCTGGAGTGCAGTGGTGTGATGAGC................................................................................................................ 263.000.001.002.00--------------------
............................................................................................................................................................................................................................ACTTGAGATCAGGAGTT............. 1703.003.00--3.00-------------------
.....................................................................................TGAGACGGAGTCTCGCTCTGTTCT............................................................................................................................................. 242.000.00---2.00------------------
.........................................................................................................................................................................................................GTTGGCCAGGCTGGTTTGGTG............................ 212.000.001.001.00--------------------
......................................................................................GAGACGGAGTCTCGCTCTGTCATCGA.......................................................................................................................................... 262.000.00-2.00--------------------
................................................................................................................GGCTGGAGTGCAGTGGTGTGGCG................................................................................................................... 232.000.002.00---------------------
.........................................................................................................................................................................................................GTTGGCCAGGCTGGTTTGGGG............................ 212.000.002.00---------------------
................................................................................................................GGCTGGAGTGCAGTGGTGTGATCTGGCG.............................................................................................................. 282.000.001.001.00--------------------
.......................................................................................................................................................................................................ATGTTGGCCAGGCTGGTTTTGAGTG.......................... 251.000.00-----------1.00----------
........................................................................................GACGGAGTCTCGCTCTGTCACCA........................................................................................................................................... 231.000.00-------------1.00--------
..........................................................................................CGGAGTCTCGCTCTGTCACCCAGGCTGGGA.................................................................................................................................. 301.000.00-1.00--------------------
................................................................................................................GGCTGGAGTGCAGTGGTGTGGCC................................................................................................................... 231.000.001.00---------------------
................................................................................................................GGCTGGAGTGCAGTGGTGTGGAGC.................................................................................................................. 241.000.00-1.00--------------------
.........................................................................................................................................................................................................GTTGGCCAGGCTGGTTTGGC............................. 201.000.001.00---------------------
.....................................................AGTCTTCTGTTCTGTGATA.................................................................................................................................................................................. 191.000.00-----1.00----------------
...........................................................................................................................................................................................................TGGCCAGGCTGGTTTTTGGC........................... 201.000.001.00---------------------
................................................................................................................GGCTGGAGTGCAGTGGTGTGATGGCG................................................................................................................ 261.000.001.00---------------------
..........................................................................................................................CAGTGGTGTGATCTCAGCTTACAAAA...................................................................................................... 261.000.00-------1.00--------------
..........................................................................................CGGAGTCTCGCTCTGTGGCC............................................................................................................................................ 201.000.00-1.00--------------------
.....................................................................................TGAGACGGAGTCTCGCTCTGTTTAT............................................................................................................................................ 251.000.00---1.00------------------
.........................................................................................................................................................................................GATGGGGTTTCACCATGTTGGCCAGGCTAAAT................................. 321.000.001.00---------------------
.........................................................................................................................................................................................................GTTGGCCAGGCTGGTTTGGAG............................ 211.000.001.00---------------------
.................................................................................................................GCTGGAGTGCAGTGGTGTGATCTGGG............................................................................................................... 261.000.001.00---------------------
................................................................................................................GGCTGGAGTGCAGTGGTGTGATGACG................................................................................................................ 261.000.00-1.00--------------------