ID: uc002uwy.2_intron_1_0_chr2_201994870_f.5p
GENE: (2)
chr2:201994820-201995069+


(2)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(4)
CELL-LINE 		(1)
CERVIX 		(6)
HEART 		(4)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GCTGTGGAGACCCACCTGCTCAGGAACCCTCACCTTGTTTCGGACTATAGGTAATTCATCAACTCTTCCTGAGGCTGGGTGGGTGGGAGGGAGTGAAGTGTCTCAGACTCTACTGAATGGCAGAAACGAGGATAATAAGAAGTGCAGCCACTTTACTGTCTCTGCCCACTTATCCAACTGCCAGATGATGTCACTTCATTCCTGTGAGCCCTTTAAATTCTTGAAACTTGTTTTCTTGCTTTCTTTTTCT
.............................................................................(((((.((.(((.(((........)))...)))..(((.....))).....................)).)))))..................................................................................................
.............................................................................78..........................................................................154..............................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR189782SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189785
................................................................................................................................AGGATAATAAGAAGTGCAGCCA....................................................................................................2218.008.002.003.00-1.002.00-------------------------
................................................................................................................................AGGATAATAAGAAGTGCAGCC.....................................................................................................2115.005.001.003.00----1.00-----------------------
...............................................................................................................ACTGAATGGCAGAAACGAGGATAA...................................................................................................................2414.004.003.00-------1.00---------------------
..................................................................................GTGGGAGGGAGTGAAAAA......................................................................................................................................................183.000.00---3.00--------------------------
..............................................................................................................................CGAGGATAATAAGAAGTGCAGCC.....................................................................................................2312.002.001.001.00----------------------------
................................................................................................................................AGGATAATAAGAAGTGCAGC......................................................................................................2012.002.002.00-----------------------------
.......................................................................................................CAGACTCTACTGAATGGCAGAAACG..........................................................................................................................2512.002.001.00-----1.00-----------------------
......................................................................................................TCAGACTCTACTGAATGGCAGAAACGA.........................................................................................................................2712.002.00-1.00-----------1.00----------------
.......................................................................................................CAGACTCTACTGAATGGCAGAAAAG..........................................................................................................................251.000.001.00-----------------------------
..................................................................................................................GAATGGCAGAAACGAGGATAATAAG...............................................................................................................2511.001.001.00-----------------------------
..................................................................................................................................................................................................TTCATTCCTGTGAGCTCTG.....................................191.000.00-------1.00----------------------
...............................................................................................................................GAGGATAATAAGAAGTGCAGCCA....................................................................................................2311.001.00-1.00----------------------------
..................................................................................................................GAATGGCAGAAACGAGGATAATA.................................................................................................................2311.001.00-1.00----------------------------
.......................................................................................................CAGACTCTACTGAATGGCA................................................................................................................................1911.001.00-------1.00----------------------
......................................................................................................TCAGACTCTACTGAATGGC.................................................................................................................................1911.001.00--------------1.00---------------
...................................................................................................................AATGGCAGAAACGAGGAT.....................................................................................................................1811.001.00-1.00----------------------------
...........................................................................................................................AAACGAGGATAATAAGAAGTGCAGCCA....................................................................................................2711.001.00-1.00----------------------------
..............................................................................................................TACTGAATGGCAGAAACGAGGATAATA.................................................................................................................2711.001.00----------------------1.00-------
.....................................................ATTCATCAACTCTTCG.....................................................................................................................................................................................161.000.00------------1.00-----------------
.................................................................................................................TGAATGGCAGAAACGAGGAT.....................................................................................................................2011.001.00-1.00----------------------------
..................................................................................................................GAATGGCAGAAACGAGGAT.....................................................................................................................1911.001.001.00-----------------------------
..................................................................................................................GAATGGCAGAAACGAGGATAATAAGAAG............................................................................................................2811.001.00----------1.00-------------------
..........................CCCTCACCTTGTTTCACG..............................................................................................................................................................................................................181.000.00--1.00---------------------------
.....................................................................TGAGGCTGGGTGGGTGCCCG.................................................................................................................................................................201.000.00---------1.00--------------------
.............................................................................................................CTACTGAATGGCAGAAACG..........................................................................................................................1911.001.00---------------1.00--------------
.......................................................................................................CAGACTCTACTGAATGGCAGAAACGA.........................................................................................................................2611.001.00-----------1.00------------------
.....................AGGAACCCTCACCTTGTTTCGGACTATAG........................................................................................................................................................................................................2911.001.00------------------------1.00-----
............................................................................................................................AACGAGGATAATAAGAAGT...........................................................................................................1911.001.001.00-----------------------------
......................................................................................................TCAGACTCTACTGAATGGCAGAAACG..........................................................................................................................2611.001.00---------------------1.00--------
..............................................................................GTGGGTGGGAGGGAGTTTGA........................................................................................................................................................201.000.00-------------------1.00----------
.................................................................................................................TGAATGGCAGAAACGAGGATA....................................................................................................................2111.001.00--------1.00---------------------
..........................................................................................................................GAAACGAGGATAATAAGAAGTGCAG.......................................................................................................2511.001.001.00-----------------------------
................................................................................................................CTGAATGGCAGAAACGAGGATA....................................................................................................................2211.001.00-----1.00------------------------
.................................................................................................................TGAATGGCAGAAACGAGGATAA...................................................................................................................2211.001.00-1.00----------------------------
......................................................................................................................................................................................................................................TTTTCTTGCTTTCTTTTCAAA211.000.00--------------------------1.00---
............................................................................................GTGAAGTGTCTCAGACTCTACTGAATGG..................................................................................................................................2811.001.00--------------------1.00---------
............CACCTGCTCAGGAACCCTCACCT.......................................................................................................................................................................................................................2311.001.001.00-----------------------------
................................................................................................................CTGAATGGCAGAAACGAGGATT....................................................................................................................221.000.00-----1.00------------------------
................................................................................................................................AGGATAATAAGAAGTGCAG.......................................................................................................1911.001.00-1.00----------------------------
...................................TGTTTCGGACTATAG........................................................................................................................................................................................................1520.500.50---------------------------0.50--
..................................................................................................................................................................................................................................CTTGTTTTCTTGCTTTCTTT....2030.330.33----------------------------0.33-
.....................................................................................................................................................................................................................TAAATTCTTGAAACTT.....................1690.110.11-----------------------------0.11
....................................................................................................................................................................................................................................TGTTTTCTTGCTTTCTTT....1890.110.11---------------------------0.11--

Antisense strand
GCTGTGGAGACCCACCTGCTCAGGAACCCTCACCTTGTTTCGGACTATAGGTAATTCATCAACTCTTCCTGAGGCTGGGTGGGTGGGAGGGAGTGAAGTGTCTCAGACTCTACTGAATGGCAGAAACGAGGATAATAAGAAGTGCAGCCACTTTACTGTCTCTGCCCACTTATCCAACTGCCAGATGATGTCACTTCATTCCTGTGAGCCCTTTAAATTCTTGAAACTTGTTTTCTTGCTTTCTTTTTCT
.............................................................................(((((.((.(((.(((........)))...)))..(((.....))).....................)).)))))..................................................................................................
.............................................................................78..........................................................................154..............................................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR189782SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189785
.......AGACCCACCTGCTCAACA................................................................................................................................................................................................................................. 181.000.00-----------------1.00------------
........................................................................................................................................................................CTTATCCAACTGCCAGAA................................................................ 181.000.00----1.00-------------------------
............CACCTGCTCAGGAACCCTCATGCC...................................................................................................................................................................................................................... 241.000.00---------1.00--------------------
...........................................................................................................................................AAGTGCAGCCACTTTATT............................................................................................. 181.000.00--1.00---------------------------
.....................................................................................................................................................................................................................................GTTTTCTTGCTTTCTGGGA.. 191.000.00----------------1.00-------------
..............................................................................................................................................GAGACAGTAAAGTGGCTGCA........................................................................................ 2011.001.00-----------------------1.00------
..........................................................................................................................................GAAGTGCAGCCACTTTAAG............................................................................................. 191.000.00--1.00---------------------------
.........................................................................................................................................................................TTATCCAACTGCCAGAAA............................................................... 181.000.00--1.00---------------------------
...........................................................................................................................................AAGTGCAGCCACTTTATTT............................................................................................ 191.000.00--1.00---------------------------
.........................ACCCTCACCTTGTTTCGGC.............................................................................................................................................................................................................. 191.000.00------------------1.00-----------