ID: uc002uwr.2_intron_8_0_chr2_201798698_r.3p
GENE: (9)
chr2:201798648-201798897-


(1)
B-CELL
(4)
CELL-LINE
(2)
FIBROBLAST
(2)
HEART
(5)
HELA
(1)
KIDNEY
(1)
LIVER
(3)
OTHER
(3)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TTATATGATCCTAGTAATTACTCAGTTTTATTACTGAAATTAAATATGCTTGGTCCTTAACTGGTACTGTTGCTTTAAAAAGAAAATACTACCAAGTAAAGAATTTCACGTGTCCTATTTTACATTAATATTACTGTCTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTCAGAGTGACTTAGTAGAAGAATATTTTGAAGCTCACAGCAGTTCAAAAGTTTT
................................................................................................................................................(((..(((.(((((.......((((.....)).))......))))))))...)))...................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189787SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................................................................TTCAGAGTGACTTAGTTCTG...................................2031.000.0031.00----------------------
...................................................................................................................................TACTGTCTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTC....................................................67116.0016.00-16.00---------------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTACTG...................................2014.000.0014.00----------------------
.............................................................................................................................TAATATTACTGTCTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTCAG..................................................7519.009.00-9.00---------------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTTATG...................................208.000.008.00----------------------
...............................................................................................................................ATATTACTGTCTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTC....................................................7117.007.00-7.00---------------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTTCCG...................................206.000.006.00----------------------
.....................................................................................................................................CTGTCTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTC....................................................6516.006.00-6.00---------------------
...................................................................................................................................TACTGTCTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTCAGTT................................................7115.001.00-5.00---------------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTCCTG...................................205.000.005.00----------------------
...............................................................................................................................ATATTACTGTCTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTCAGT.................................................745.000.00-5.00---------------------
.....................................................................................................................................CTGTCTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTCAG..................................................6714.004.00--4.00--------------------
........................................................................................................................................................................................................AGTGACTTAGTAGAAGAAT...............................1914.004.00---3.00-------------1.00-----
.........................................................................................................................................CTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTCA...................................................6214.004.00-4.00---------------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTACAG...................................203.000.003.00----------------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTACCG...................................203.000.003.00----------------------
..............................................................................................................................AATATTACTGTCTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTCAG..................................................7412.002.00--2.00--------------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTCTTG...................................202.000.002.00----------------------
.......................................................................................................................................GTCTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTCATT.................................................662.000.00----2.00------------------
.................................................................................................................................ATTACTGTCTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTC....................................................6912.002.00----2.00------------------
......................................................................................................................................TGTCTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTCAG..................................................6612.002.00--1.00--1.00-----------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTTACG...................................202.000.002.00----------------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTTCC....................................192.000.001.00------------1.00---------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTTTTG...................................202.000.002.00----------------------
.........................................................................................................................................CTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTCAG..................................................6312.002.00--2.00--------------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTATCG...................................202.000.002.00----------------------
.........................................................................................................................................................................................................GTGACTTAGTAGAAGAAT...............................1812.002.00---2.00-------------------
............................................................................................................................................................................AAGGACTGACTACTCTGTTCACTTTCAG..................................................2812.002.00--------1.00-------1.00------
....................................................................................................................................................................................ACTACTCTGTTCACTTTCAG..................................................2011.001.00------1.00----------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTACTGC..................................211.000.001.00----------------------
........................................................................................................................................................................................................AGTGACTTAGTAGAAGAATATTTTGA........................2611.001.00-----------1.00-----------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTATTG...................................201.000.001.00----------------------
.............................................................................................................................................................................................................CTTAGTAGAAGAATATAA...........................181.000.00----------1.00------------
............................................................................................................................................................................AAGGACTGACTACTCTGTTCACTTTCAGA.................................................2911.001.00------------------1.00----
........................................................................................................................................TCTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTCA...................................................6311.001.00----1.00------------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTTTAG...................................201.000.001.00----------------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTTCT....................................191.000.001.00----------------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTTTCG...................................201.000.001.00----------------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTAATG...................................201.000.001.00----------------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTCATG...................................201.000.001.00----------------------
......................................................................................................................................................GAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTCAG..................................................5011.001.00--1.00--------------------
...........................................................................................................................................................................TAAGGACTGACTACTCTGTTCACTTTCAG..................................................2911.001.00--------------1.00--------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTAATGT..................................211.000.001.00----------------------
................ATTACTCAGTTTTATACGA.......................................................................................................................................................................................................................191.000.001.00----------------------
...............................................................................................................................................TTGATATGAGACAGACAGT........................................................................................191.000.00---------------1.00-------
...............................................................................................................................................................................................CACTTTCAGAGTGACTTAGTAGAAC..................................251.000.00-------1.00---------------
......................................................................................................................................TGTCTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACT.......................................................6111.001.00-------------------1.00---
.........................................................................................................................................................................................................GTGACTTAGTAGAAGAATA..............................1911.001.00---------1.00-------------
...................................................................................................................................TACTGTCTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTCAG..................................................6911.001.00-----1.00-----------------
...................................................................................................................................................................................................TTCAGAGTGACTTAGTATAG...................................201.000.001.00----------------------
........................................................................................................................................................................................................AGTGACTTAGTAGAAGA.................................1720.500.50----------------------0.50
....................................................................................................................................................................................................................GAAGAATATTTTGAAGC.....................1720.500.50--------------------0.50--
....................................................................................................................................................................................................................GAAGAATATTTTGAAGCT....................1820.500.50---------------------0.50-

Antisense strand
TTATATGATCCTAGTAATTACTCAGTTTTATTACTGAAATTAAATATGCTTGGTCCTTAACTGGTACTGTTGCTTTAAAAAGAAAATACTACCAAGTAAAGAATTTCACGTGTCCTATTTTACATTAATATTACTGTCTAATTTTGATATGAGACAGATATTTGAAGCTACTAAGGACTGACTACTCTGTTCACTTTCAGAGTGACTTAGTAGAAGAATATTTTGAAGCTCACAGCAGTTCAAAAGTTTT
................................................................................................................................................(((..(((.(((((.......((((.....)).))......))))))))...)))...................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)
DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)
DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)
SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR189787SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................................................................................................................................................................TGAAGCTCACAGCAGTTCAG....... 201.000.00------------1.00----------