ID: uc002uwe.2_intron_11_0_chr2_201726586_r.5p
GENE: CLK1(1)
chr2:201729087-201729336-


(17)
B-CELL 		(2)
BRAIN 		(9)
BREAST 		(31)
CELL-LINE 		(6)
CERVIX 		(2)
FIBROBLAST 		(8)
HEART 		(6)
HELA 		(1)
KIDNEY 		(6)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(18)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
ATTGCGTTACAAGCTTTGTCTCCTTCGACTTGGAGTCTTTGTCCAGGACGGTAAGACGCAGGAGGGAGCGGACTAGGTGACAGGGCCGTTCCTGTGAGCCTCGCGGGCGCCTGGCGATGCCCCCTTTTCCTGCTTGTTTGCTGCCCGCCGTCCCCGGCGCGACGACTGCCTGCTCCCTTCACTCCCAGGCTGCACAGTGGCGGCGCGCCCCTCTTTCCTGCGCGGCCGAGCCTGTCGCCGCCGGATCCGG
...............................................................(((.(((..(((((..((((((....))))))..(((.....))).)))))...))))))...............................................................................................................................
...............................................................64.........................................................123.............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR040015(GSM532900)
G623T. (cervix)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM359210(GSM359210)
hepg2_biotin_el_hl_b. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR038861(GSM458544)
MM466. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR038860(GSM458543)
MM426. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189783SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................CGGACTAGGTGACAGGGC....................................................................................................................................................................18118.0018.00----3.00---1.001.00-1.002.00--1.001.00----1.00-1.002.00------------------------2.001.00-------------------------------1.00---------------------------------
...................................................................GCGGACTAGGTGACAGGG.....................................................................................................................................................................18112.0012.00-3.00------1.00-----------1.00-1.00--1.00-1.00----------1.00-----------------------------1.001.00-------1.00--------------------------------------
...................................................................GCGGACTAGGTGACAGGGC....................................................................................................................................................................19110.0010.00-1.00--------1.004.00---1.00-1.00--------------------------------------------------------------------------------------------1.001.00----
.........................................TCCAGGACGGTAAGACGC...............................................................................................................................................................................................1818.008.001.00----2.00--1.00------------------------------1.00-----------------1.00----------------------------------1.00------------1.00----------
....................................................................CGGACTAGGTGACAGGGCCG..................................................................................................................................................................2017.007.002.00-----3.00------------------1.00-----------------------------------------------------------------------------1.00------------
...........................................CAGGACGGTAAGACGCAGGA...........................................................................................................................................................................................2017.007.00--6.00------------------------------------------1.00----------------------------------------------------------------------
.....................................TTTGTCCAGGACGGTAAGAC.................................................................................................................................................................................................2016.006.002.00--2.00-1.00-1.00------------------------------------------------------------------------------------------------------------
....................................CTTTGTCCAGGACGGTAAGA..................................................................................................................................................................................................2015.005.00-------2.00-------------------------2.00--------------1.00-------------------------------------------------------------------
...................................................................GCGGACTAGGTGACAGGGCCG..................................................................................................................................................................2114.004.001.00-------1.00--------2.00--------------------------------------------------------------------------------------------------
....................................................................CGGACTAGGTGACAGGGCA...................................................................................................................................................................1914.0018.00-2.00-------------2.00----------------------------------------------------------------------------------------------------
.......................................TGTCCAGGACGGTAAGACGC...............................................................................................................................................................................................2014.004.00-2.00-----------------------1.00-----------------------------------1.00------------------------------------------------------
...............TTGTCTCCTTCGACTTGGAG.......................................................................................................................................................................................................................2014.004.00----4.00---------------------------------------------------------------------------------------------------------------
....................................................................CGGACTAGGTGACAGGGCC...................................................................................................................................................................1914.004.00-----------------------------------------1.001.00-----------1.00---------1.00---------------------------------------------------
...................................................................GCGGACTAGGTGACAGGGCCGTTCCTGT...........................................................................................................................................................2813.003.00-3.00------------------------------------------------------------------------------------------------------------------
..................................................GTAAGACGCAGGAGGGAGCGG...................................................................................................................................................................................2113.003.00----------3.00---------------------------------------------------------------------------------------------------------
..............................................................AGGGAGCGGACTAGGTGA..........................................................................................................................................................................1813.003.00-----1.00-1.00-------------------------------------------1.00----------------------------------------------------------------
.................................................................GAGCGGACTAGGTGACAGGG.....................................................................................................................................................................2013.003.00----------1.00------------------------------------------------1.00-------------------------------1.00------------------------
......................................TTGTCCAGGACGGTAAGACGC...............................................................................................................................................................................................2113.003.001.00------2.00------------------------------------------------------------------------------------------------------------
........................................GTCCAGGACGGTAAGACGCAG.............................................................................................................................................................................................2113.003.001.00-1.00---------------------------------1.00-------------------------------------------------------------------------------
......................................TTGTCCAGGACGGTAAGA..................................................................................................................................................................................................1813.003.00--------------1.00-----------------------------------------------------------1.00---------1.00-------------------------------
............................................AGGACGGTAAGACGCAG.............................................................................................................................................................................................1713.003.00--------------------------3.00-----------------------------------------------------------------------------------------
..................................GTCTTTGTCCAGGACGGTAAGA..................................................................................................................................................................................................2212.002.00-------------1.00---------------------------------------------------------------------------------------------------1.00--
................................................CGGTAAGACGCAGGAGGGAGCG....................................................................................................................................................................................2212.002.00-------------2.00------------------------------------------------------------------------------------------------------
......................................TTGTCCAGGACGGTAAGACGCAG.............................................................................................................................................................................................2312.002.00-----1.00--------------------------1.00-----------------------------------------------------------------------------------
.......................................TGTCCAGGACGGTAAGACGCA..............................................................................................................................................................................................2112.002.00---1.00---------------------------------------------------------------1.00------------------------------------------------
....................................................................CGGACTAGGTGACAGGGCAA..................................................................................................................................................................2012.0018.00--2.00-----------------------------------------------------------------------------------------------------------------
............................................AGGACGGTAAGACGCAGGAGGGAGC.....................................................................................................................................................................................2512.002.00---------1.00------------1.00---------------------------------------------------------------------------------------------
...................................TCTTTGTCCAGGACGGTAAGA..................................................................................................................................................................................................2112.002.00------1.00------------------------------------------------------------------1.00------------------------------------------
........................................GTCCAGGACGGTAAGACG................................................................................................................................................................................................1812.002.00--------------1.00-----------------------------1.00-----------------------------------------------------------------------
..................................GTCTTTGTCCAGGACGGTAAG...................................................................................................................................................................................................2112.002.00------------------------------------1.00-----------------------------------------------------------------1.00-------------
............................................AGGACGGTAAGACGCAGG............................................................................................................................................................................................1812.002.00------------1.00---1.00---------------------------------------------------------------------------------------------------
................................GAGTCTTTGTCCAGGACGGTAAGAC.................................................................................................................................................................................................2512.002.00----------------------------------2.00---------------------------------------------------------------------------------
.........................CGACTTGGAGTCTTTGTCCAGGACG........................................................................................................................................................................................................2512.002.00-------------------2.00------------------------------------------------------------------------------------------------
....................................................................CGGACTAGGTGACAGG......................................................................................................................................................................1612.002.00---------------------2.00----------------------------------------------------------------------------------------------
.................................................................GAGCGGACTAGGTGACAGGGC....................................................................................................................................................................2112.002.00----------1.00----------------------------------1.00----------------------------------------------------------------------
....................................CTTTGTCCAGGACGGTAAGACGCA..............................................................................................................................................................................................2412.002.00--------1.00---1.00-------------------------------------------------------------------------------------------------------
..........AAGCTTTGTCTCCTTCGA..............................................................................................................................................................................................................................1812.002.00------2.00-------------------------------------------------------------------------------------------------------------
..TGCGTTACAAGCTTTGTCTCCTTCGACTTGG.........................................................................................................................................................................................................................3111.001.00-------------------------------------------1.00------------------------------------------------------------------------
.....................................TTTGTCCAGGACGGTAAGACGCA..............................................................................................................................................................................................2311.001.00-----------------------------------------------1.00--------------------------------------------------------------------
.....................................................................................................CGCGGGCGCCTGGCGTGA...................................................................................................................................181.000.00---1.00----------------------------------------------------------------------------------------------------------------
...........................................CAGGACGGTAAGACGCAGGAGGGAG......................................................................................................................................................................................2511.001.00----------------------------------------------1.00---------------------------------------------------------------------
..........................................CCAGGACGGTAAGACGCAGGAGGG........................................................................................................................................................................................2411.001.00---------1.00----------------------------------------------------------------------------------------------------------
....................TCCTTCGACTTGGAGTCTTTGTCCAGGACG........................................................................................................................................................................................................3011.001.00------------------------------------------------------------------------1.00-------------------------------------------
.....GTTACAAGCTTTGTCTCCTT.................................................................................................................................................................................................................................2011.001.00-------------------------------------------------------------------------------1.00------------------------------------
...................................................................GCGGACTAGGTGACAGGGCCGT.................................................................................................................................................................2211.001.00---------------------------1.00----------------------------------------------------------------------------------------
.....................................................AGACGCAGGAGGGAGCATAG.................................................................................................................................................................................201.000.00--------------1.00-----------------------------------------------------------------------------------------------------
................................................................................................................................................CCGCCGTCCCCGGCGCCG........................................................................................181.000.00---------------------------------------------------------------------------------------------1.00----------------------
..................................GTCTTTGTCCAGGACG........................................................................................................................................................................................................1611.001.00-------------------------------1.00------------------------------------------------------------------------------------
...................................................................GCGGACTAGGTGACAGG......................................................................................................................................................................1711.001.00-----------------------------------------------------------------------1.00--------------------------------------------
...................................................................GCGGACTAGGTGACAGGGCA...................................................................................................................................................................2011.0010.00----------------1.00---------------------------------------------------------------------------------------------------
..................................GTCTTTGTCCAGGACGGTAA....................................................................................................................................................................................................2011.001.00----------------------------------------------1.00---------------------------------------------------------------------
......................................................................................................................................................................................TCCCAGGCTGCACAGTGGGT................................................201.000.00----------------------------------------------------------------------------------------------------1.00---------------
........................TCGACTTGGAGTCTTTGTCCAG............................................................................................................................................................................................................2211.001.00------------------------------1.00-------------------------------------------------------------------------------------
...........................................................AGGAGGGAGCGGACTAGG.............................................................................................................................................................................1811.001.00-------1.00------------------------------------------------------------------------------------------------------------
............GCTTTGTCTCCTTCGACTTGGAGTCTTTGTCCAGGA..........................................................................................................................................................................................................3611.001.00---------------------------------------------------------------1.00----------------------------------------------------
..........................................................CAGGAGGGAGCGGACTAGG.............................................................................................................................................................................1911.001.00---------------------------------------------------1.00----------------------------------------------------------------
.....................................................................................................................................TTGTTTGCTGCCCGCCGTCCCCGGCG...........................................................................................2611.001.00-------------------------------------------------------------------------------------1.00------------------------------
........................................GTCCAGGACGGTAAGACGC...............................................................................................................................................................................................1911.001.00---1.00----------------------------------------------------------------------------------------------------------------
........................................GTCCAGGACGGTAAGACGCAGGA...........................................................................................................................................................................................2311.001.00--------------------------------------------1.00-----------------------------------------------------------------------
.......................................................ACGCAGGAGGGAGCGGACTAG..............................................................................................................................................................................2111.001.00------------------------------------------------------------------------------------------1.00-------------------------
....................................................................CGGACTAGGTGACAGGGCCGTG................................................................................................................................................................2211.001.00-----1.00--------------------------------------------------------------------------------------------------------------
..................................GTCTTTGTCCAGGACGGTA.....................................................................................................................................................................................................1911.001.00------------------------------------------1.00-------------------------------------------------------------------------
............................................AGGACGGTAAGACGCAGGAGGGAGCTGAC.................................................................................................................................................................................2911.002.00--------------------------------------------------1.00-----------------------------------------------------------------
...................................................................GCGGACTAGGTGACAGGGCCGTTCCTG............................................................................................................................................................2711.001.00------------------------------------------------------------1.00-------------------------------------------------------
.....................CCTTCGACTTGGAGTCTTTTGCC..............................................................................................................................................................................................................231.000.00---------------------------------------------------------------------------------------------------1.00----------------
................................................................................................................................................CCGCCGTCCCCGGCGGGA........................................................................................181.000.00----------------------------------------------------------------------------1.00---------------------------------------
............................................AGGACGGTAAGACGCAGGAGGGAGCGGACTA...............................................................................................................................................................................3111.001.00---------1.00----------------------------------------------------------------------------------------------------------
............................................AGGACGGTAAGACGCAGGAGGGAGCGGAC.................................................................................................................................................................................2911.001.00--------------------------------------------------------------------------------------------------1.00-----------------
........................................GTCCAGGACGGTAAGACGCAGG............................................................................................................................................................................................2211.001.00---1.00----------------------------------------------------------------------------------------------------------------
....................................................AAGACGCAGGAGGGAGCGGACTAGGCG...........................................................................................................................................................................271.000.00----------------------------------------1.00---------------------------------------------------------------------------
......................................TTGTCCAGGACGGTAAGACG................................................................................................................................................................................................2011.001.00-----------------------1.00--------------------------------------------------------------------------------------------
.............................................................................................................................................................................................CTGCACAGTGGCGGCGCGCCCCT......................................2311.001.00-----------------------------------------1.00--------------------------------------------------------------------------
.........................................TCCAGGACGGTAAGACGCAGGA...........................................................................................................................................................................................2211.001.00------------------1.00-------------------------------------------------------------------------------------------------
.....................................TTTGTCCAGGACGGTAAGACGCAGG............................................................................................................................................................................................2511.001.00----------------------------1.00---------------------------------------------------------------------------------------
...............................................ACGGTAAGACGCAGGAGGGA.......................................................................................................................................................................................2011.001.00--------------------------------------------------------1.00-----------------------------------------------------------
....................................CTTTGTCCAGGACGGTAAGAC.................................................................................................................................................................................................2111.001.00-----------------------------------------------1.00--------------------------------------------------------------------
...................................................................GCGGACTAGGTGACAGGGCC...................................................................................................................................................................2011.001.00-------------------------------------------------------1.00------------------------------------------------------------
...............................................ACGGTAAGACGCAGGAGGGAG......................................................................................................................................................................................2111.001.00----------------------------------------------------------------------1.00---------------------------------------------
.....................................TTTGTCCAGGACGGTAAGACG................................................................................................................................................................................................2111.001.00---1.00----------------------------------------------------------------------------------------------------------------
.....................................TTTGTCCAGGACGGTAATACG................................................................................................................................................................................................2111.001.001.00-------------------------------------------------------------------------------------------------------------------
...................CTCCTTCGACTTGGAG.......................................................................................................................................................................................................................1611.001.00-------------1.00------------------------------------------------------------------------------------------------------
..................................................................AGCGGACTAGGTGACAGG......................................................................................................................................................................1811.001.00-------------------------------------------1.00------------------------------------------------------------------------
........................................GTCCAGGACGGTAAGACGCA..............................................................................................................................................................................................2011.001.00------1.00-------------------------------------------------------------------------------------------------------------
..................................GTCTTTGTCCAGGACGGTAAGACGCAGAA...........................................................................................................................................................................................291.000.00-------------------1.00------------------------------------------------------------------------------------------------
......................................................GACGCAGGAGGGAGCGGACTA...............................................................................................................................................................................2111.001.00-------------------------------------1.00------------------------------------------------------------------------------
..............................TGGAGTCTTTGTCCAGGACGG.......................................................................................................................................................................................................2111.001.00-------------------------------1.00------------------------------------------------------------------------------------
.........................................................GCAGGAGGGAGCGGACTA...............................................................................................................................................................................1811.001.00--------------------1.00-----------------------------------------------------------------------------------------------
..................................GTCTTTGTCCAGGACGGTAAGACGCAGGAGGGAGCGGACTAGGTGACAGGGCCGTTCCTGTGAGCCTCG...................................................................................................................................................6911.001.00-----------------------------------------------------1.00--------------------------------------------------------------
.................................................................GAGCGGACTAGGTGACA........................................................................................................................................................................1711.001.00----------------------------1.00---------------------------------------------------------------------------------------
..................................GTCTTTGTCCAGGACGGTAAGACG................................................................................................................................................................................................2411.001.001.00-------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TGCACAGTGGCGGCGAACA.........................................191.000.00--------------------------------------------------------------------------------1.00-----------------------------------
..................................GTCTTTGTCCAGGACGGTAAGAC.................................................................................................................................................................................................2311.001.00------------------------1.00-------------------------------------------------------------------------------------------
......................................TTGTCCAGGACGGTAAGACGCA..............................................................................................................................................................................................2211.001.00------------------1.00-------------------------------------------------------------------------------------------------
.........................................TCCAGGACGGTAAGACGCAGGAG..........................................................................................................................................................................................2311.001.00----------------------1.00---------------------------------------------------------------------------------------------
.......................................TGTCCAGGACGGTAAGAC.................................................................................................................................................................................................1811.001.001.00-------------------------------------------------------------------------------------------------------------------
.....................................................................................................CGCGGGCGCCTGGCGCG....................................................................................................................................171.000.00------------------------------------------------------------------1.00-------------------------------------------------
....................................................................CGGACTAGGTGACAGGGCCGT.................................................................................................................................................................2111.001.00-1.00------------------------------------------------------------------------------------------------------------------
....................................................AAGACGCAGGAGGGAGCGGACT................................................................................................................................................................................2211.001.00---------------------------1.00----------------------------------------------------------------------------------------
............................................AGGACGGTAAGACGCAGGA...........................................................................................................................................................................................1911.001.00--------------------1.00-----------------------------------------------------------------------------------------------
...........................................................AGGAGGGAGCGGACTAGATTT..........................................................................................................................................................................211.000.00-----------------------------------------------------------------------------------------1.00--------------------------
..........................................CCAGGACGGTAAGACGCAGGAGGGAGC.....................................................................................................................................................................................2711.001.00----------------------------------------------------------------------------------------1.00---------------------------
.........................................................GCAGGAGGGAGCGGACT................................................................................................................................................................................1711.001.00-----------------------------------------------------------------1.00--------------------------------------------------
......................................TTGTCCAGGACGGTAAGAC.................................................................................................................................................................................................1911.001.00-------------------------------------1.00------------------------------------------------------------------------------
....................................................................CGGACTAGGTGACAGGGCCGTTC...............................................................................................................................................................2311.001.001.00-------------------------------------------------------------------------------------------------------------------
.........................................................GCAGGAGGGAGCGGACTAGGTGAT.........................................................................................................................................................................241.000.00-----------------------------------------------------------------------------------------------1.00--------------------
.........................................................GCAGGAGGGAGCGGACTAGG.............................................................................................................................................................................2011.001.00------------------1.00-------------------------------------------------------------------------------------------------
..........................................................................AGGTGACAGGGCCGTTCCTGTGA.........................................................................................................................................................2311.001.00---------------------------------------------------------------------------1.00----------------------------------------
.....................................TTTGTCCAGGACGGTAA....................................................................................................................................................................................................1711.001.00-----------------------------------1.00--------------------------------------------------------------------------------
....................................................................CGGACTAGGTGACAGGGCCGTTCCTG............................................................................................................................................................2611.001.00--------------------------------1.00-----------------------------------------------------------------------------------
...........................................CAGGACGGTAAGACGCAGGAGG.........................................................................................................................................................................................2211.001.00-----------------------1.00--------------------------------------------------------------------------------------------
.....................................................AGACGCAGGAGGGAGCGGACTAGGCGAC.........................................................................................................................................................................281.000.00----------------------------------------1.00---------------------------------------------------------------------------
....................................................................................GCCGTTCCTGTGAGCCTCGCGGG...............................................................................................................................................2311.001.00--------------------------------------------------------------------------------------------------------1.00-----------
.........................................................GCAGGAGGGAGCGGACTAGGT............................................................................................................................................................................2111.001.00------------------------------------------------------------------------------------------------1.00-------------------
................................................................................................................................................................................CTTCACTCCCAGGCTGCACAGTGGCGGCGCGCC.........................................3311.001.00-----------------------------------------------------------------------------------------------------------1.00--------
...................................TCTTTGTCCAGGACGGTAAGACGCAG.............................................................................................................................................................................................2611.001.00-----------------------------1.00--------------------------------------------------------------------------------------
............................CTTGGAGTCTTTGTCCAGGACGGTAAG...................................................................................................................................................................................................2711.001.00-----------------------------1.00--------------------------------------------------------------------------------------
.................................................................GAGCGGACTAGGTGACAGGGCCGG.................................................................................................................................................................241.000.00---1.00----------------------------------------------------------------------------------------------------------------
.........................................TCCAGGACGGTAAGACGCA..............................................................................................................................................................................................1911.001.00----------------------------------------------------------------------------------------------1.00---------------------
.............................................................GAGGGAGCGGACTAGGTGACAGGGC....................................................................................................................................................................2511.001.00------------------------------------------------1.00-------------------------------------------------------------------
............................................AGGACGGTAAGACGCAGGAG..........................................................................................................................................................................................2011.001.00------------1.00-------------------------------------------------------------------------------------------------------
.....................................................................................................CGCGGGCGCCTGGCGATGC..................................................................................................................................1911.001.00------------------------------1.00-------------------------------------------------------------------------------------
......................................................GACGCAGGAGGGAGCGGACTAGG.............................................................................................................................................................................2311.001.00---------------------------------------1.00----------------------------------------------------------------------------
........................................GTCCAGGACGGTAAGACGCAGGAGGGAGCGGA..................................................................................................................................................................................3211.001.00---------1.00----------------------------------------------------------------------------------------------------------
...............................GGAGTCTTTGTCCAGGACGAT......................................................................................................................................................................................................211.000.00------------------------------------------------------------------------------1.00-------------------------------------
.......................TTCGACTTGGAGTCTTTGTCCAGGACGGTAAGA..................................................................................................................................................................................................3311.001.00----------------------------------------------------------------------------------------------------------1.00---------
......................................................GACGCAGGAGGGAGCGGACTAGGTGA..........................................................................................................................................................................2611.001.00-----1.00--------------------------------------------------------------------------------------------------------------
......................CTTCGACTTGGAGTC.....................................................................................................................................................................................................................1520.500.50------------------------------------------------------------------------------------------------------------------0.50-
.................................................................................................................................................CGCCGTCCCCGGCGCG.........................................................................................1630.330.33----------------------------0.33---------------------------------------------------------------------------------------
........................................................CGCAGGAGGGAGCGG...................................................................................................................................................................................1560.170.17----------------------------------------------------0.17---------------------------------------------------------------
.....................................................................................................................................................................CTGCCTGCTCCCTTCA.....................................................................1670.140.14-------------------------------------------------------------------------------------------------------------------0.14

Antisense strand
ATTGCGTTACAAGCTTTGTCTCCTTCGACTTGGAGTCTTTGTCCAGGACGGTAAGACGCAGGAGGGAGCGGACTAGGTGACAGGGCCGTTCCTGTGAGCCTCGCGGGCGCCTGGCGATGCCCCCTTTTCCTGCTTGTTTGCTGCCCGCCGTCCCCGGCGCGACGACTGCCTGCTCCCTTCACTCCCAGGCTGCACAGTGGCGGCGCGCCCCTCTTTCCTGCGCGGCCGAGCCTGTCGCCGCCGGATCCGG
...............................................................(((.(((..(((((..((((((....))))))..(((.....))).)))))...))))))...............................................................................................................................
...............................................................64.........................................................123.............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577579(Rovira)
total RNA. (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR038853(GSM458536)
MELB. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR040015(GSM532900)
G623T. (cervix)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR029124(GSM416753)
HeLa. (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM359210(GSM359210)
hepg2_biotin_el_hl_b. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR189785SRR040031(GSM532916)
G013T. (cervix)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR038861(GSM458544)
MM466. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR038860(GSM458543)
MM426. (cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189783SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...........................................................................................................................................................................................................................................CGCCGCCGGATCCGGGC 171.000.00-----------------------------------------------------------------------------------1.00--------------------------------
....................................................................................................................................................................................................AAGAGGGGCGCGCCGCCAC................................... 1911.001.00------------------------------------------------------------------------------------------------------------1.00-------
................................................................................................................................................CCGCCGTCCCCGGCGCGGG....................................................................................... 191.000.00---------------------------------------------------------------------------------------1.00----------------------------
..............................................................................................................................................................GTGAAGGGAGCAGGCAGTCGTCGC.................................................................... 2411.001.00----------------------------------------------------1.00---------------------------------------------------------------
..............................................................................................................................................................GGGAGCAGGCAGTCGTCGC......................................................................... 1911.001.00----------------------------------------------------------1.00---------------------------------------------------------
..........................................................................................................................................................................................................GCGCGCCCCTCTTTCA................................ 161.000.00-------------------------------------------------------------------------------------------------------------1.00------
.......................................................................................................................................................AGGCAGTCGTCGCGCCGGGG............................................................................... 2011.001.00-1.00------------------------------------------------------------------------------------------------------------------
............................................................................................................................................AGGCAGTCGTCGCGCCGGGGACGGCGGGCAG............................................................................... 3111.001.00-------------------------------------------------------------------------------------------------1.00------------------
............................................................................................................................................................................................................................CGGCGACAGGCTCGGCCGCG.......... 2011.001.001.00-------------------------------------------------------------------------------------------------------------------
................................................................................CAGGGCCGTTCCTGTCAGA....................................................................................................................................................... 191.000.00----------------------------------------------------------------------------------------------------------------1.00---
.........................................................................................................................................CCGGGGACGGCGGGCAGCAA............................................................................................. 2011.001.00---------1.00----------------------------------------------------------------------------------------------------------
....................................................................................................................................................................GGGAGTGAAGGGAGCAGGCAGT................................................................ 2211.001.00--------1.00-----------------------------------------------------------------------------------------------------------
......................................................................................................................................................................CTGGGAGTGAAGGGAGCAGGCA.............................................................. 2211.001.00--------1.00-----------------------------------------------------------------------------------------------------------
..........................................................................................................................CCTTTTCCTGCTTGTTTCAA............................................................................................................ 201.000.00--------------------------------------------------------------------------------------1.00-----------------------------
........................CTGGACAAAGACTCCAAGTCGA............................................................................................................................................................................................................ 2211.001.00--------------1.00-----------------------------------------------------------------------------------------------------
...............CTCCAAGTCGAAGGAGACAA....................................................................................................................................................................................................................... 2011.001.00--------------------------------------------------------------1.00-----------------------------------------------------
....................................................................................................................................................................................................CAGGAAAGAGGGGCGCGCCGCCAC.............................. 2411.001.00-----------------------------------------------------------------------------------------------------1.00--------------
.....................................................................................CGAGGCTCACAGGAACGG................................................................................................................................................... 1811.001.00--------------------------------------1.00-----------------------------------------------------------------------------
.........................................................................................................................GCAGCAAACAAGCAGGAAAAGGG.......................................................................................................... 2311.001.00---------------------------------------------------------------------------------1.00----------------------------------
........................................................CGCAGGAGGGAGCGGACTAGGTGACAA....................................................................................................................................................................... 271.000.00-----------------------------------1.00--------------------------------------------------------------------------------