ID: uc002uwd.2_intron_6_0_chr2_201722608_r
GENE: (1)
chr2:201722558-201722745-


(1)
AGO2.ip 		(3)
B-CELL 		(7)
BRAIN 		(7)
BREAST 		(25)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(7)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(29)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
GAAATACAAGTTCTGGAACATCTGAATACAACAGACCCCAACAGTACTTTGTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCTATTTTTCATGTGTTTGTAGCCGCTGTGTCCAGATGTTGGAATGGTTTGAGCATCATGGTCACATTTGCA
...................................................................((.((..(((((((...(((((((.................))))))).)))))))..)).))..........................................................
..................................................51................................................................................133.....................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCTATTTTTCATGTGTTTGTAG..................................................881224.00224.00143.0040.0027.0011.00------3.00--------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGT...........................................................................................................31116.0016.00----14.00-------------------2.00------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCTATTTTTCATGTGTTTGTAGT.................................................89111.00224.00-10.00-1.00---------------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTA..............................................................................60111.0011.001.0010.00-----------------------------------------------------------------------------------------
..AATACAAGTTCTGGAACATCTG....................................................................................................................................................................22110.0010.00-----5.00-----------1.00-1.00--------------1.002.00-------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCTAT...................................................................71110.0010.00-10.00-----------------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCTATTTTTCATT...........................................................7919.007.007.002.00-----------------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCTATTTTTCATGTG.........................................................8119.009.00-9.00-----------------------------------------------------------------------------------------
.....................................................................................................................................................AGATGTTGGAATGGTTTGAGCAT................2318.008.00-------8.00-----------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCT.....................................................................6918.008.00-8.00-----------------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCTATTTTTCAT............................................................7817.007.00-7.00-----------------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGG..................................................................................................................2417.007.00-------------1.00----1.002.00-----------1.00--1.00---------1.00----------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATAC...........................................................................6316.006.00-6.00-----------------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCTATTTTTCATGTGTTTGTAT..................................................8816.006.00-6.00-----------------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCTATTTTTCATGTGTTTGTAGA.................................................8916.00224.003.001.00-2.00---------------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCTATTTTTCATGTGTTTGTA...................................................8716.006.00-6.00-----------------------------------------------------------------------------------------
............CTGGAACATCTGAATACAACAGACATC.....................................................................................................................................................2716.002.00--------6.00----------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAG...............................................................................................................2715.005.00---------------1.001.00--------------1.00--------------------------------------------------1.00----1.00---
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCTATTTTTCATGTGTTTGTAGAA................................................9015.00224.005.00------------------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCTATTTTTCATGT..........................................................8015.005.00-4.00-1.00---------------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCTATTTTT...............................................................7514.004.004.00------------------------------------------------------------------------------------------
.............TGGAACATCTGAATACAACAGACC.......................................................................................................................................................2414.004.00------2.00--1.00----1.00----------------------------------------------------------------------------
.............TGGAACATCTGAATACAACAGAC........................................................................................................................................................2314.004.00----------------------------2.00-----------1.00---------------1.00----------------------------------
......................................................GTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCTATTTTTCATGTGTTTGTAGAT................................................863.000.00-3.00-----------------------------------------------------------------------------------------
..AATACAAGTTCTGGAACATCTGAATACAACAGA.........................................................................................................................................................3313.003.00----------------2.00-------------------------------------------------------1.00------------------
...........TCTGGAACATCTGAATACAACAG..........................................................................................................................................................2313.003.00-------------------------1.00--------------------1.00-----------------1.00--------------------------
..........TTCTGGAACATCTGAATACAACAG..........................................................................................................................................................2413.003.00------1.00----1.00-1.00-----------------------------------------------------------------------------
............................................................................................................TATACTTAGCTATTTTTCATG...........................................................2112.002.00-----------------1.00---------1.00---------------------------------------------------------------
.............TGGAACATCTGAATACAACAGACCCCA....................................................................................................................................................2712.002.00------1.00------------------1.00-----------------------------------------------------------------
.............TGGAACATCTGAATACAACAGACCCC.....................................................................................................................................................2612.002.00------------------------------1.00-----------------------1.00------------------------------------
............CTGGAACATCTGAATACAACAGAC........................................................................................................................................................2412.002.00------1.00-----------------------------1.00------------------------------------------------------
............................................................GATTAGAACTTGGGAAGTGGTATCA.......................................................................................................2512.002.00---------------------2.00---------------------------------------------------------------------
......................................CAACAGTACTTTGTAAGTATCAGA..............................................................................................................................2412.002.00-------------------------------------------------1.00--------------------------------------1.00--
........AGTTCTGGAACATCTGAATACAACAGACC.......................................................................................................................................................2912.002.00---------2.00---------------------------------------------------------------------------------
.......AAGTTCTGGAACATCTGAATACAAC............................................................................................................................................................2512.002.00--------------2.00----------------------------------------------------------------------------
........AGTTCTGGAACATCTGAATACAACAG..........................................................................................................................................................2612.002.00------2.00------------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGG............................................................................................................3012.002.00-------------------------------------1.00------------------------------------------------1.00----
.....................................................................................................................................................AGATGTTGGAATGGTTTGAGCATCATGGTCACA......3312.002.00---------------------------------------1.00-----------------------------------1.00---------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAG.......................................................................6712.002.00----------2.00--------------------------------------------------------------------------------
.........................................................................................................................................................GTTGGAATGGTTTGAGCAAAA..............212.000.00-----2.00-------------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACT......................................................................................................................2012.002.00--------------------2.00----------------------------------------------------------------------
.................................................................................................................................................GTCCAGATGTTGGAATGGT........................1912.002.00----------------------2.00--------------------------------------------------------------------
...................................................................................................................................................................TTTGAGCATCATGGTCACATTTG..2312.002.00-----------------------------1.00--1.00----------------------------------------------------------
.......................................................................................................................ATTTTTCATGTGTTTGTAGAA................................................212.000.00---------------2.00---------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAG......................................................................................................3612.002.00---------------------------------2.00---------------------------------------------------------
..AATACAAGTTCTGGAACATCTGAATA................................................................................................................................................................2612.002.00-----1.00----------------------------------------------1.00--------------------------------------
.............TGGAACATCTGAATACAACAGACCC......................................................................................................................................................2512.002.00------1.00-----------------------1.00------------------------------------------------------------
........AGTTCTGGAACATCTGAATACAACAGA.........................................................................................................................................................2712.002.00--------------1.00----------------------------------------------------------------------1.00-----
..................................................GTAAGTATCAGATTAGAA........................................................................................................................1821.501.50--------------------------------------1.50----------------------------------------------------
.AAATACAAGTTCTGGAACAT.......................................................................................................................................................................2011.001.00------1.00------------------------------------------------------------------------------------
.AAATACAAGTTCTGGAACATCTG....................................................................................................................................................................2311.001.00-------------1.00-----------------------------------------------------------------------------
............................................................GATTAGAACTTGGGAAGTGGTAT.........................................................................................................2311.001.00-----------1.00-------------------------------------------------------------------------------
......CAAGTTCTGGAACATCTGAATACAACAGAC........................................................................................................................................................3011.001.00------------1.00------------------------------------------------------------------------------
.........................................................TCAGATTAGAACTTGGGAAGTGG............................................................................................................2311.001.00--------------------------------------------------------------------1.00----------------------
............CTGGAACATCTGAATACAACAGACCCC.....................................................................................................................................................2711.001.00-----------1.00-------------------------------------------------------------------------------
...........TCTGGAACATCTGAATACAACA...........................................................................................................................................................2211.001.00--------------------------------------------------------------------------------1.00----------
.............TGGAACATCTGAATACAACAGA.........................................................................................................................................................2211.001.00---------------------------------------------------------------------------------1.00---------
...................ATCTGAATACAACAGACCCCA....................................................................................................................................................2111.001.00-----------1.00-------------------------------------------------------------------------------
...............................................................................................................................................GTGTCCAGATGTTGGAATG..........................1911.001.00----------------------------------------------------------------------1.00--------------------
.............................................................................................................................CATGTGTTTGTAGCCGCTGTGTCCAGATGTTGG..............................3311.001.00-----------------------------------------1.00-------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCA.......................................................................................................3511.001.00------------1.00------------------------------------------------------------------------------
..................................................................AACTTGGGAAGTGGTATCTCTG....................................................................................................221.000.00--------------------------1.00----------------------------------------------------------------
..AATACAAGTTCTGGAACATCTGT...................................................................................................................................................................2311.0010.00-----------------------------------------------------------------------------------1.00-------
.......AAGTTCTGGAACATCTGAATACAACAGACCC......................................................................................................................................................3111.001.00-------------------------------------------------------------------------------1.00-----------
.AAATACAAGTTCTGGAACATCTGAATACAACAGA.........................................................................................................................................................3411.001.00------------1.00------------------------------------------------------------------------------
.AAATACAAGTTCTGGAACATCTGAA..................................................................................................................................................................2511.001.00--------------------------------------------------1.00----------------------------------------
..............................................................TTAGAACTTGGGAAGTGGTA..........................................................................................................2011.001.00---------------------------1.00---------------------------------------------------------------
................................................TTGTAAGTATCAGATTAGAAC.......................................................................................................................2111.001.00-----------------------------1.00-------------------------------------------------------------
.......................................................................................................................................................ATGTTGGAATGGTTTTT....................171.000.00---------------------------------------------------1.00---------------------------------------
............CTGGAACATCTGAATACAACAGA.........................................................................................................................................................2311.001.00---------1.00---------------------------------------------------------------------------------
..........................................................CAGATTAGAACTTGGGAAGTGGTAT.........................................................................................................2511.001.00----------------------------------------------------------1.00--------------------------------
............CTGGAACATCTGAATACAACAGACATA.....................................................................................................................................................2711.002.00--------1.00----------------------------------------------------------------------------------
.............TGGAACATCTGAATACAACAG..........................................................................................................................................................2111.001.00--------------------------------1.00----------------------------------------------------------
.........................................................TCAGATTAGAACTTGGG..................................................................................................................1711.001.00-------------------------------------------------------1.00-----------------------------------
....TACAAGTTCTGGAACATCTGAATACAACAG..........................................................................................................................................................3011.001.00-----------------------------------------------------------1.00-------------------------------
.......................................................................................................................................TAGCCGCTGTGTCCAGATGTTGGAA............................2511.001.00--------------------------1.00----------------------------------------------------------------
.............................................................ATTAGAACTTGGGAAGTGG............................................................................................................1911.001.00-----------------------------------------------------------------------1.00-------------------
..........................................................................................................................................................TTGGAATGGTTTGAGCATCACG............221.000.00-----------------------1.00-------------------------------------------------------------------
........................................ACAGTACTTTGTAAGTTGTT................................................................................................................................201.000.00------------1.00------------------------------------------------------------------------------
...................................................................................................................................................CCAGATGTTGGAATGGTTTGAGC..................2311.001.00-----------------------1.00-------------------------------------------------------------------
................AACATCTGAATACAACAGACCC......................................................................................................................................................2211.001.00-----------------------------------------------1.00-------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAA................................................................................................................2611.001.00--------------------------------------------------------------------------1.00----------------
........................................................ATCAGATTAGAACTTGGGAAGTGGT...........................................................................................................2511.001.00------------------1.00------------------------------------------------------------------------
.............TGGAACATCTGAATACAACA...........................................................................................................................................................2011.001.00---------1.00---------------------------------------------------------------------------------
....TACAAGTTCTGGAACATCTGAATACAACAGA.........................................................................................................................................................3111.001.00------------------------------------------------------------------------------1.00------------
.....................................................................................................................................................AGATGTTGGAATGGTTTGA....................1911.001.00-----------------------------------------------------------------1.00-------------------------
.........................................................................................................................TTTTCATGTGTTTGTT...................................................161.000.00------------------------------------------------------------1.00------------------------------
...........................................................AGATTAGAACTTGGGAAGTGGTATCAG......................................................................................................2711.001.00-----------------------------------------------------------------------------1.00-------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCTA....................................................................7011.001.00---1.00---------------------------------------------------------------------------------------
...ATACAAGTTCTGGAACATCT.....................................................................................................................................................................2011.001.00------1.00------------------------------------------------------------------------------------
.........GTTCTGGAACATCTGAATACAACAGAC........................................................................................................................................................2711.001.00-----------------------------------------------------------------------------------------1.00-
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGC......................................................................6811.001.00--1.00----------------------------------------------------------------------------------------
.........GTTCTGGAACATCTGAATACAACAGACCCCAAC..................................................................................................................................................3311.001.00-------------------------------------------1.00-----------------------------------------------
.........GTTCTGGAACATCTGAATACAACAGACC.......................................................................................................................................................2811.001.00------1.00------------------------------------------------------------------------------------
......................................................GTATCAGATTAGAACTTGGGAAGTGG............................................................................................................2611.001.00-------------------------------------------------------------------------1.00-----------------
...ATACAAGTTCTGGAACATCTGT...................................................................................................................................................................2211.001.00------------------------------------------------------------------------------------1.00------
..AATACAAGTTCTGGAACATCTGAATACAACAGACCC......................................................................................................................................................3611.001.00----1.00--------------------------------------------------------------------------------------
....................................................................................................................GCTATTTTTCATGTGTTTGTAG..................................................2211.001.00--------------------1.00----------------------------------------------------------------------
.AAATACAAGTTCTGGAACATCTGAATA................................................................................................................................................................2711.001.00-----1.00-------------------------------------------------------------------------------------
.............TGGAACATCTGAATACAAC............................................................................................................................................................1911.001.00-----------------------------------------------------1.00-------------------------------------
....................................................................................................................................................................TTGAGCATCATGGTCACA......1811.001.00------------------------------------------------------------------1.00------------------------
..................................................GTAAGTATCAGATTAGAACTTGG...................................................................................................................2311.001.00---------------------------------------------------------1.00---------------------------------
.......................................................................................................................................................ATGTTGGAATGGTTTGAGCATCATGGTC.........2811.001.00---------------------------------------------------------------------1.00---------------------
..AATACAAGTTCTGGAACATCTGA...................................................................................................................................................................2311.001.00-----1.00-------------------------------------------------------------------------------------
..AATACAAGTTCTGGAACATCTGAATACAACAGATT.......................................................................................................................................................3511.003.00-------------------------------------------------------------------1.00-----------------------
..........................................................CAGATTAGAACTTGGGAAGTGGTATCAG......................................................................................................2811.001.00------------------------------------1.00------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTGGTA..........................................................................................................3211.001.00-----------------1.00-------------------------------------------------------------------------
...ATACAAGTTCTGGAACATCTGAATACAACAGA.........................................................................................................................................................3211.001.00---------------------------------------------1.00---------------------------------------------
.......................................................................................................................................................ATGTTGGAATGGTTTGAGC..................1911.001.00-----1.00-------------------------------------------------------------------------------------
..............GGAACATCTGAATACAACAG..........................................................................................................................................................2011.001.00------------------------------------------1.00------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGAAGTG.............................................................................................................2911.001.00------------------1.00------------------------------------------------------------------------
......................TGAATACAACAGACCCCAACAGTACTTT..........................................................................................................................................2811.001.00----------------------------------------------------------------------------1.00--------------
...ATACAAGTTCTGGAACATCTG....................................................................................................................................................................2111.001.00-----1.00-------------------------------------------------------------------------------------
........................................................ATCAGATTAGAACTTGGG..................................................................................................................1811.001.00---------1.00---------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAACTTGGGA.................................................................................................................2511.001.00---------------------------------------------------------------1.00---------------------------
............................CAACAGACCCCAACAGTACTTTG.........................................................................................................................................2311.001.00-----1.00-------------------------------------------------------------------------------------
......................................................................................................................................................GATGTTGGAATGGTTTCAGC..................201.000.00------------------------------------------------1.00------------------------------------------
........AGTTCTGGAACATCTGAA..................................................................................................................................................................1820.500.50-----0.50-------------------------------------------------------------------------------------
..................................................GTAAGTATCAGATTAGAAC.......................................................................................................................1920.500.50------------------------------------------------------------------------------------------0.50
........AGTTCTGGAACATCTGA...................................................................................................................................................................1720.500.50-------------------------------------0.50-----------------------------------------------------
.........GTTCTGGAACATCTGAA..................................................................................................................................................................1730.330.33------0.33------------------------------------------------------------------------------------
......................TGAATACAACAGACCC......................................................................................................................................................1640.250.25---------------------------------------0.25---------------------------------------------------
...................................CCCCAACAGTACTTT..........................................................................................................................................1540.250.25----------------------------------------0.25--------------------------------------------------

Antisense strand
GAAATACAAGTTCTGGAACATCTGAATACAACAGACCCCAACAGTACTTTGTAAGTATCAGATTAGAACTTGGGAAGTGGTATCAGGTATATTTAAATTAGGAGCAACTATACTTAGCTATTTTTCATGTGTTTGTAGCCGCTGTGTCCAGATGTTGGAATGGTTTGAGCATCATGGTCACATTTGCA
...................................................................((.((..(((((((...(((((((.................))))))).)))))))..)).))..........................................................
..................................................51................................................................................133.....................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR038855(GSM458538)
D10. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
...........................ACAACAGACCCCAACATT............................................................................................................................................... 182.000.00-------------1.00------------------------------------------------1.00----------------------------
....................................CCCAACAGTACTTTGCCC...................................................................................................................................... 181.000.00-------------------------------------------------------------1.00-----------------------------