ID: uc002uwc.2_intron_8_0_chr2_201683625_f.3p
GENE: (9)
chr2:201684505-201684754+


(1)
AGO2.ip 		(2)
B-CELL 		(1)
BREAST 		(8)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(6)
HELA 		(2)
OTHER 		(6)
SKIN

Sense strand
CGCCTCGGCCTCCCAAAGTGCTGGGATTACAGACGTGAGCCACTGTGCCCAGCCTATTTTTTAAATTTCTGGTAAATAAGTTATAGTTTGCAGTGATTATAAAAGATGAGTTAAGTTCTATATTGTCTGTATTGTAGGAGTTTTGTAATGGATGGTTATTTGTAATGAATGACTAAATCTTTTCTCTGTTCCTTTAAAAGCAATACAGCCCTCTACTTGCTGCCTTTACTACTCAAGGTCAGTCTGAGCT
.......................................................................................................................................(((((.........((((((((((((.....))))))))..))))........))))).........................................................
.....................................................................................................................................134..........................................................195.....................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189782SRR189784DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR189783GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189785GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR343335SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR040043(GSM532928)
G428T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR343337DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
..............................................................................................................................CTGTATTGTAGGAGTTTTGTAATGGATGGTTATTTGTAATGAATGACTAAATCTTTTCTCTGTTCCTTTAAAAG..................................................74119.0019.0018.00------------------------1.00------------
...............................................................................................................................TGTATTGTAGGAGTTTTGTAATGGATGGTTATTTGTAATGAATGACTAAATCTTTTCTCTGTTCCTTTAAAAG..................................................73114.0014.00---13.00--1.00-------------------------------
...........................................................................................................................TGTCTGTATTGTAGGAGTTTTGTAATGGATGGTTATTTGTAATGAATGACTAAATCTTTTCTCTGTTCCTTTAAAAG..................................................77112.0012.0012.00-------------------------------------
...............AAGTGCTGGGATTACAGACGAACC...................................................................................................................................................................................................................245.000.00-4.001.00-----------------------------------
................AGTGCTGGGATTACAGACGAGCT...................................................................................................................................................................................................................234.000.00-1.003.00-----------------------------------
................................................................................................................................................................................................................CCCTCTACTTGCTGCCTTTACTACTCAAG.............2923.503.50----1.00--2.50------------------------------
............................ACAGACGTGAGCCACTGTGCAGCC......................................................................................................................................................................................................242.000.00--2.00-----------------------------------
.........................................................................................................................................................................................................................TGCTGCCTTTACTACTTA...............182.000.00--------2.00-----------------------------
............................ACAGACGTGAGCCACTGTGCCGGCC.....................................................................................................................................................................................................252.000.00-2.00------------------------------------
........................................................................................................................................................................................................CAATACAGCCCTCTACTTGCTGCCCTT.......................272.000.00-----2.00--------------------------------
........................................................................................................................................................................................................CAATACAGCCCTCTACTTGCTGCCTTT.......................2722.002.00----2.00---------------------------------
...............................................................................................................................TGTATTGTAGGAGTTTTGTAATGGATGGTTATTTGTAATGAATGACTAAATCTTTTCTCTGTTC...........................................................6412.002.00------2.00-------------------------------
...........................................................................................................................................................................................................................CTGCCTTTACTACTCAAG.............1832.002.00-------------0.330.67---------1.00-------------
..............AAAGTGCTGGGATTACAGACGAGTC...................................................................................................................................................................................................................252.000.00-2.00------------------------------------
..............................................................................................................................................TTGTAATGGATGGTTATTTGTAATGAATG...............................................................................2912.002.00-------------------1.001.00-----------------
................AGTGCTGGGATTACAGACGACCC...................................................................................................................................................................................................................232.000.00-1.001.00-----------------------------------
................AGTGCTGGGATTACAGACGAGCG...................................................................................................................................................................................................................232.000.00--2.00-----------------------------------
................................................................................................................................................................................................................CCCTCTACTTGCTGCCTTTACT....................2231.671.67----0.670.33-------0.330.33-----------------------
........................................................................................................................................................................................................CAATACAGCCCTCTACTTGCTGCCTT........................2621.501.50----1.00------------------------0.50--------
..........................................................................................................................................AGTTTTGTAATGGATGGTTATTTG........................................................................................2411.001.00---------------------1.00----------------
............................................................................................................................................................................CTAAATCTTTTCTCTGCTG...........................................................191.000.00---------1.00----------------------------
..............................................................................................................................................................................................................AGCCCTCTACTTGCTGCCTTCAC.....................231.000.00-----------1.00--------------------------
........................................................................................................................................................................................................CAATACAGCCCTCTACTTGCTGCCT.........................2521.001.00----1.00---------------------------------
....................................................CCTATTTTTTAAATTTCATAG.................................................................................................................................................................................211.000.00-----1.00--------------------------------
................AGTGCTGGGATTACAGACGAGTC...................................................................................................................................................................................................................231.000.00-1.00------------------------------------
...............AAGTGCTGGGATTACAGACGAGAC...................................................................................................................................................................................................................241.000.00--1.00-----------------------------------
............................ACAGACGTGAGCCACTGTGCCCACCCT...................................................................................................................................................................................................271.000.00-1.00------------------------------------
............................ACAGACGTGAGCCACTGTGCCCAGCCGGT.................................................................................................................................................................................................291.000.00--1.00-----------------------------------
................AGTGCTGGGATTACAGACGAGAC...................................................................................................................................................................................................................231.000.00-1.00------------------------------------
............................ACAGACGTGAGCCACTGTGCCCAGCCCCTC................................................................................................................................................................................................301.000.00--1.00-----------------------------------
..............................AGACGTGAGCCACTGTGCCGGAC.....................................................................................................................................................................................................231.000.00-1.00------------------------------------
.......................................................................................................................................AGGAGTTTTGTAATGGATGGTTATTTGTAATG...................................................................................3211.001.00------------1.00-------------------------
........................................................................................................................................................................................................CAATACAGCCCTCTACT.................................1721.001.00-----1.00--------------------------------
................................................................................................................................................................................................................CCCTCTACTTGCTGCCTTTACTACCCA...............271.000.00-----1.00--------------------------------
................AGTGCTGGGATTACAGACGAACC...................................................................................................................................................................................................................231.000.00-1.00------------------------------------
..........................................................................................................................TTGTCTGTATTGTAGGAGTTTTGTAATGGATGGTTATTTGTAATGAATGACTAAATCTTTTCTCTGTTCCTTTAAAAG..................................................7811.001.00------1.00-------------------------------
..........................TTACAGACGTGAGCCACTCCGT..........................................................................................................................................................................................................221.000.00--1.00-----------------------------------
......................GGGATTACAGACGTGATAA.................................................................................................................................................................................................................191.000.00-----------------------1.00--------------
............................ACAGACGTGAGCCACTGGGGA.........................................................................................................................................................................................................211.000.00-1.00------------------------------------
............................ACAGACGTGAGCCACTGTGCCCACCC....................................................................................................................................................................................................261.000.00--1.00-----------------------------------
................AGTGCTGGGATTACAGACGAGGC...................................................................................................................................................................................................................231.000.00--1.00-----------------------------------
...............AAGTGCTGGGATTACAGACGAGCT...................................................................................................................................................................................................................241.000.00-1.00------------------------------------
.................................................................................................................................................................GTAATGAATGACTAAATCTTTTCTCTG..............................................................2711.001.00---------------1.00----------------------
................................................................................................................................................................................................................CCCTCTACTTGCTGCCTTACT.....................211.000.00-----1.00--------------------------------
...............AAGTGCTGGGATTACAGACGAGTC...................................................................................................................................................................................................................241.000.00--1.00-----------------------------------
................................................................................................................................................................................................................CCCTCTACTTGCTGCCTTTACTACCAAG..............281.000.00-----1.00--------------------------------
.....................................................................................................................................................................................................AAGCAATACAGCCCTCTACTTGCT.............................2420.500.50-------------------------------0.50------
........................................................................................................................................................................................................CAATACAGCCCTCTACTTGCTGCCTTTACTAC..................3220.500.50----0.50---------------------------------
.........................................................................................................................................................................................................................TGCTGCCTTTACTACTCAAGG............2120.500.50----------------------------0.50---------
.......................................................................................................................................................................................................................CTTGCTGCCTTTACTACTCAAG.............2220.500.50---------0.50----------------------------
.........................................................................................................................................................................................................................TGCTGCCTTTACTACTCAAG.............2020.500.50---------------------------0.50----------
............................................................................................................................................................................................................................TGCCTTTACTACTCAAG.............1740.500.50-------0.25-----0.25------------------------
........................................................................................................................................................................................................CAATACAGCCCTCTACTTGCTGCCTTTACT....................3020.500.50----0.50---------------------------------
.....................................................................................................................................................................................................AAGCAATACAGCCCTCTACTTGCTGCCT.........................2820.500.50-----------0.50--------------------------
........................................................................................................................................................................................................CAATACAGCCCTCTACTTGCTGCCTACTA.....................2920.501.00-----0.50--------------------------------
........................................................................................................................................................................................................CAATACAGCCCTCTACTT................................1820.500.50------------0.50-------------------------
........................................................................................................................................................................................................CAATACAGCCCTCTACTTGCTGCCTTTA......................2820.500.50----0.50---------------------------------
........................................................................................................................................................................................................CAATACAGCCCTCTACTTGCTGCCTACT......................2820.501.00---------0.50----------------------------
...............................................................................................................................................................................................................GCCCTCTACTTGCTGCCTTTACTA...................2430.330.33---------------------------------0.33----
....................................................................................................................................................................................................................CTACTTGCTGCCTTTACTACTC................2230.330.33----0.33---------------------------------
.................................................................................................................................................................................................................CCTCTACTTGCTGCCTTTAC.....................2030.330.33--------------------------0.33-----------
.......................................................................................................................................................................................................................CTTGCTGCCTTTACTACTCAA..............2130.330.33-----0.33--------------------------------
........................................................................................................................................................................................................................................TCAAGGTCAGTCTGAGC.1730.330.33--------------------------0.33-----------
..............................................................................................................................................................................................................................CCTTTACTACTCAAG.............1580.120.12-------------0.12------------------------

Antisense strand
CGCCTCGGCCTCCCAAAGTGCTGGGATTACAGACGTGAGCCACTGTGCCCAGCCTATTTTTTAAATTTCTGGTAAATAAGTTATAGTTTGCAGTGATTATAAAAGATGAGTTAAGTTCTATATTGTCTGTATTGTAGGAGTTTTGTAATGGATGGTTATTTGTAATGAATGACTAAATCTTTTCTCTGTTCCTTTAAAAGCAATACAGCCCTCTACTTGCTGCCTTTACTACTCAAGGTCAGTCTGAGCT
.......................................................................................................................................(((((.........((((((((((((.....))))))))..))))........))))).........................................................
.....................................................................................................................................134..........................................................195.....................................................
SizePerfect hitTotal NormPerfect NormDRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189782SRR189784DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR189783GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189785GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR189786SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR343335SRR343334DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR040043(GSM532928)
G428T. (cervix)		TAX577745(Rovira)
total RNA. (breast)		SRR343337DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
..................................GTGAGCCACTGTGCCCAGCCTTAA................................................................................................................................................................................................ 242.000.00----2.00---------------------------------
................AGTGCTGGGATTACAGACGTGAGCCAGC.............................................................................................................................................................................................................. 281.000.00--1.00-----------------------------------
...............AAGTGCTGGGATTACAGAA........................................................................................................................................................................................................................ 191.000.00----------1.00---------------------------
.....................TGGGATTACAGACGTGTAA.................................................................................................................................................................................................................. 191.000.00----------------------1.00---------------
.................................................................................................................AGTTCTATATTGTCTCCGC...................................................................................................................... 191.000.00-----------------1.00--------------------
...............AAGTGCTGGGATTACAGACGTGAGTG................................................................................................................................................................................................................. 261.000.00----1.00---------------------------------
..................................................................................................................................ATTGTAGGAGTTTTGTATGAA................................................................................................... 211.000.00----------------1.00---------------------
..GTCTGTAATCCCAGCACTTTGGGAGGCCGAGG........................................................................................................................................................................................................................ 3201.001.00------------------1.00-------------------
..................................................................................................................................................................................................................CTCTACTTGCTGCCTATAG..................... 191.000.00----1.00---------------------------------
....................................................................................................................................TGTAGGAGTTTTGTACCCT................................................................................................... 191.000.00-----1.00--------------------------------
...........................................TGTGCCCAGCCTATTTTCG............................................................................................................................................................................................ 191.000.00----------1.00---------------------------
..................TGCTGGGATTACAGACGTGAGAAT................................................................................................................................................................................................................ 241.000.00----1.00---------------------------------
.................................CGTGAGCCACTGTGCCCAGCCT................................................................................................................................................................................................... 221.000.00-1.00------------------------------------
...............................................................................................................................................................................................................ACCTTGAGTAGTAAAGGCAGCAAGTAGAGGGC........... 3220.500.50------------------------------0.50-------
...............................................................................................................................................................................................................AGTAGTAAAGGCAGCAAGTAGAGGGC................. 2630.330.33--------------------------------0.33-----
...............................................................................................................................................................................................................GGCAGCAAGTAGAGGGC.......................... 1730.330.33----------------------------------0.33---
...............................................................................................................................................................................................................CAGCAAGTAGAGGGC............................ 1570.290.29------------------------------------0.140.14
.................................................................................................................................................................................................................AAGGCAGCAAGTAGAGG........................ 1750.200.20-----------------------------------0.20--