ID: uc002uvt.2_intron_5_0_chr2_201371815_r.5p
GENE: (1)
chr2:201374534-201374783-


(1)
AGO2.ip 		(7)
B-CELL 		(1)
BRAIN 		(20)
BREAST 		(35)
CELL-LINE 		(19)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(3)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(35)
SKIN 		(1)
XRN.ip

Sense strand
GTCCGCCCCGCGGCGTCCGGCGGCCGCGCCGAGGGTCTGGCGGGCCGCAGGTCAGTCTGGGAAGCTGCCGACCCGCCCCACCCCCCCGGTGCGGAAGAGCCGGGCGCGGGATGGGCCGCGGGCCCGGAAGGCGGCGGGGCGCCCTGAGGAAGGGCACGGGCCGCGCTGGTAACGCGCGCGCCCCGGGCTGCAGGCTCGGGCTTCGGGCCGATTTGGGGTCTCCAGGCCGCGGAAGACCGTGGCGGGGCTT
..................................................(((..((((((..........(((((((((.(((((((((........))))))...))).))))..))))))))))).)))......................................................................................................................
..................................................51...............................................................................132....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR040020(GSM532905)
G699N_2. (cervix)		TAX577589(Rovira)
total RNA. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577741(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029124(GSM416753)
HeLa. (hela)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR040010(GSM532895)
G529N. (cervix)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR040008(GSM532893)
G727N. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR040040(GSM532925)
G612N. (cervix)		GSM532889(GSM532889)
G576N. (cervix)		SRR037936(GSM510474)
293cand1. (cell line)		SRR040030(GSM532915)
G013N. (cervix)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783GSM532871(GSM532871)
G652N. (cervix)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM532874(GSM532874)
G699T. (cervix)		SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM339994(GSM339994)
hues6. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038859(GSM458542)
MM386. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR038863(GSM458546)
MM603. (cell line)		GSM532887(GSM532887)
G761N. (cervix)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040012(GSM532897)
G648N. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM532877(GSM532877)
G691N. (cervix)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
...........................................................................................................GGGATGGGCCGCGGGCCCGGA..........................................................................................................................21116.0016.00-------1.00--1.00-----3.00-------------1.00----1.00---1.00-----------1.00-----------1.00-1.00------------1.00---1.00-----------------1.00-------1.00--------------1.00-----------
.......................................................................CCCGCCCCACCCCCCCGGCC...............................................................................................................................................................20116.005.00---4.001.00------1.00--1.00--1.00---2.00-----2.00----------1.00---------------1.00-------------------------------------------1.00-------------------1.00----------------
.......................................................................CCCGCCCCACCCCCCCGGC................................................................................................................................................................19114.005.00---1.00--1.00----1.00-----------------1.00---1.00----1.00-1.00---1.00-----1.00-1.00-----1.00---------1.00---1.001.00-------------------------------------------------------------
.........................................................................CGCCCCACCCCCCCGGCC...............................................................................................................................................................189.000.00----2.00--------------------1.00--2.00-----------1.00-------1.00--------------------------------1.00-----------------1.00-----------------------------------
..................................GTCTGGCGGGCCGCAGGT......................................................................................................................................................................................................1818.008.006.00----------------------------------------------------1.00-----------------------------------------------------------1.00---------------------
.........................................................................CGCCCCACCCCCCCGGC................................................................................................................................................................177.000.00------1.00-1.00-------------1.00---1.00----------------------1.00------------1.00--------------------------------1.00---------------------------------------
.........................................................................CGCCCCACCCCCCCGGCCC..............................................................................................................................................................196.000.00--1.00-----1.00--------1.00-------------1.00---------------------------------------------------------------------1.00---------1.00-----------------------
...........................................................................................................GGGATGGGCCGCGGGCCCGG...........................................................................................................................2015.005.00-1.00--------------------------------1.00---------------------1.00-------------------------------------------------------1.00-------1.00--------------
.......................................................................CCCGCCCCACCCCCCCGG.................................................................................................................................................................1815.005.00-----------------1.00-----1.00----------------------------------------------1.00-------------1.00---------------------------------------1.00----------
................CCGGCGGCCGCGCCGAGGGT......................................................................................................................................................................................................................2014.004.004.00--------------------------------------------------------------------------------------------------------------------------------------
........................................................................CCGCCCCACCCCCCCGG.................................................................................................................................................................1714.004.00-----------------------------1.00-----------------------------------------1.00-----1.00-------------------------------------1.00-------------------
............................................................................................................GGATGGGCCGCGGGCCCGGA..........................................................................................................................2014.004.00-4.00-------------------------------------------------------------------------------------------------------------------------------------
...........................GCCGAGGGTCTGGCGGGCC............................................................................................................................................................................................................1913.003.00---------2.00--------------------------------1.00--------------------------------------------------------------------------------------------
.................................................................................................................................................GAGGAAGGGCACGGGCCG.......................................................................................1813.003.00-----------------------------------1.001.00------------------------------1.00-------------------------------------------------------------------
.......................................................................CCCGCCCCACCCCCCCGGCCC..............................................................................................................................................................2113.005.00--------1.00-------------------------------------------------------------------------------------1.00--------------1.00-------------------------
...........................................................................................................GGGATGGGCCGCGGGCCCGGAA.........................................................................................................................2212.002.00---------------------------------------1.00--------------------------1.00--------------------------------------------------------------------
.................................................................................................................................................................................GCGCCCCGGGCTGCAGGCTCGTT..................................................232.000.00-2.00-------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................GCCGGGCGCGGGATGGGCCGC...................................................................................................................................2112.002.00--------------------2.00------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................CTGAGGAAGGGCACGGGC.........................................................................................1812.002.00---------------------------------------------2.00-----------------------------------------------------------------------------------------
..................................................................................................GCCGGGCGCGGGATGGGC......................................................................................................................................1812.002.00------------2.00--------------------------------------------------------------------------------------------------------------------------
............................................................................................................GGATGGGCCGCGGGCCG.............................................................................................................................172.000.00-------------------------------------2.00-------------------------------------------------------------------------------------------------
.........................................................................................................................................GGCGCCCTGAGGAAGGGCACGGGCCG.......................................................................................2612.002.00-------------2.00-------------------------------------------------------------------------------------------------------------------------
......................................................................ACCCGCCCCACCCCCCCGGCC...............................................................................................................................................................212.000.00--2.00------------------------------------------------------------------------------------------------------------------------------------
........................................................................CCGCCCCACCCCCCCGGC................................................................................................................................................................1812.004.00-----------------------------------------1.00--------------------------------------------------------------------------1.00------------------
............................................................................................................................CGGAAGGCGGCGGGGCGCCCTG........................................................................................................2212.002.00-----2.00---------------------------------------------------------------------------------------------------------------------------------
............................................................................................................GGATGGGCCGCGGGCCCGG...........................................................................................................................1912.002.00----------1.00--------------------------------------------------1.00-------------------------------------------------------------------------
......................................................................ACCCGCCCCACCCCCCCGGCCCC.............................................................................................................................................................231.000.00--1.00------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................TGGTAACGCGCGCGCCCC..................................................................1811.001.00--------------------------------------------1.00------------------------------------------------------------------------------------------
..................................................................................................................GCCGCGGGCCCGGAAGGCGGCGGGGCGCC...........................................................................................................2911.001.00-----------1.00---------------------------------------------------------------------------------------------------------------------------
.........GCGGCGTCCGGCGGCCGTCC.............................................................................................................................................................................................................................201.000.00-------------------------------------------------------1.00-------------------------------------------------------------------------------
..........CGGCGTCCGGCGGCCGCG..............................................................................................................................................................................................................................1811.001.00------------------------------------------------------------1.00--------------------------------------------------------------------------
.......................................................................CCCGCCCCACCCCCCCTGCC...............................................................................................................................................................201.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................CTGAGGAAGGGCACGGGCCGC......................................................................................2111.001.00--------------------------------------------------------------------------------------1.00------------------------------------------------
.........................................................................CGCCCCACCCCCCCGGCCCC.............................................................................................................................................................201.000.00----------------------------------------------------------------1.00----------------------------------------------------------------------
....................................................................................................CGGGCGCGGGATGGGAC.....................................................................................................................................171.000.00-----1.00---------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................GGGGTCTCCAGGCCGCCATT................201.000.00-------------------------------1.00-------------------------------------------------------------------------------------------------------
............................................................................................................GGATGGGCCGCGGGCCCGGT..........................................................................................................................2011.002.00----------1.00----------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................CACGGGCCGCGCTGGTAACG............................................................................2011.001.00----------------------------------------------------------------------------------------1.00----------------------------------------------
......................................................................ACCCGCCCCACCCCCCCGGC................................................................................................................................................................201.000.00--------1.00------------------------------------------------------------------------------------------------------------------------------
.......................................................................CCCGCCCCACCCCCCCGGCCCC.............................................................................................................................................................2211.005.00--------------1.00------------------------------------------------------------------------------------------------------------------------
....................................................................................................CGGGCGCGGGATGGGAGG....................................................................................................................................181.000.00-------------------------------------------------------------------------------------------------1.00-------------------------------------
..................GGCGGCCGCGCCGAGGGT......................................................................................................................................................................................................................1811.001.00------------------------------------1.00--------------------------------------------------------------------------------------------------
..........................................................................GCCCCACCCCCCCGGCCC..............................................................................................................................................................181.000.00-----------------------------------------------------------------------------------------------------------1.00---------------------------
........................................................................CCGCCCCACCCCCCCGGGGA..............................................................................................................................................................2011.004.00-------------------1.00-------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................CTGGTAACGCGCGCGCCCCGGG...............................................................2211.001.00-------1.00-------------------------------------------------------------------------------------------------------------------------------
.......CCGCGGCGTCCGGCGAGCT................................................................................................................................................................................................................................191.000.00-------------------------------------------------------------------------------1.00-------------------------------------------------------
............................CCGAGGGTCTGGCGGGCC............................................................................................................................................................................................................1811.001.00-------------------------1.00-------------------------------------------------------------------------------------------------------------
...........................................................................................................GGGATGGGCCGCGGGCCAGGA..........................................................................................................................211.000.00------------------------------------------------------------------------------------------------------1.00--------------------------------
..................................................................................CCCCCGGTGCGGAAGAGCCG....................................................................................................................................................2011.001.00------------------------------1.00--------------------------------------------------------------------------------------------------------
.......................................................................CCCGCCCCACCCCCCCGGCA...............................................................................................................................................................2011.005.00--------------------------------1.00------------------------------------------------------------------------------------------------------
............................................................................................................GGATGGGCCGCGGGCCGGT...........................................................................................................................191.000.00----1.00----------------------------------------------------------------------------------------------------------------------------------
......CCCGCGGCGTCCGGCGGCCGG...............................................................................................................................................................................................................................211.000.00-------------------------------------------------------------------------------------------------------1.00-------------------------------
..................................................................................................................................................................................................................ATTTGGGGTCTCCAGGCCGC....................2011.001.00-------------------------------------------1.00-------------------------------------------------------------------------------------------
........................................................................CCGCCCCACCCCCCCGGCC...............................................................................................................................................................1911.004.00---------------------------------1.00-----------------------------------------------------------------------------------------------------
...................................TCTGGCGGGCCGCAGGT......................................................................................................................................................................................................1711.001.001.00--------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................AAGGGCACGGGCCGCGCT...................................................................................1811.001.00--------------------------------------------------------------------------------------------1.00------------------------------------------
...............................................................................................................................AAGGCGGCGGGGCGCCCTGC.......................................................................................................201.000.00-------1.00-------------------------------------------------------------------------------------------------------------------------------
...............................................CAGGTCAGTCTGGGAAGC.........................................................................................................................................................................................1811.001.00--------------------------------------------------------------------------------------------------------1.00------------------------------
..............................................................................................................................................CCTGAGGAAGGGCACGGGCCGC......................................................................................2211.001.00------------------------------------------------------------------------------------------------------------------1.00--------------------
...............TCCGGCGGCCGCGCCGGGG........................................................................................................................................................................................................................191.000.00------------------1.00--------------------------------------------------------------------------------------------------------------------
........................................................................CCGCCCCACCCCCCCTCAC...............................................................................................................................................................191.000.00---------------------------------------------------------------------------------------------------------------------1.00-----------------
..........................................................................................................................CCCGGAAGGCGGCGGGG...............................................................................................................1711.001.00---------------------------------------------------------------------1.00-----------------------------------------------------------------
.......................................................................................GGTGCGGAAGAGCCGGGCGCGGGATGGGC......................................................................................................................................2911.001.00------------1.00--------------------------------------------------------------------------------------------------------------------------
..................................................................................CCCCCGGTGCGGAAGAGC......................................................................................................................................................1811.001.00--------------------------1.00------------------------------------------------------------------------------------------------------------
....................................................................................................................................................GAAGGGCACGGGCCGCGCTGGT................................................................................2211.001.00---------------------------------------------------------------------------------------------1.00-----------------------------------------
..............................................................................CACCCCCCCGGTGCGGA...........................................................................................................................................................1711.001.00---------1.00-----------------------------------------------------------------------------------------------------------------------------
......................................................................ACCCGCCCCACCCCCCCCGC................................................................................................................................................................201.000.00--1.00------------------------------------------------------------------------------------------------------------------------------------
.....CCCCGCGGCGTCCGGCGGC..................................................................................................................................................................................................................................1911.001.00------------------------------------------1.00--------------------------------------------------------------------------------------------
...................................................................................................................................CGGCGGGGCGCCCTGAGGAA...................................................................................................2011.001.00---------------1.00-----------------------------------------------------------------------------------------------------------------------
................CCGGCGGCCGCGCCGAGGGTCTGGCGG...............................................................................................................................................................................................................2711.001.00-------------------------------------------1.00-------------------------------------------------------------------------------------------
..................GGCGGCCGCGCCGAGTGGC.....................................................................................................................................................................................................................191.000.00--------------1.00------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................CCTGAGGAAGGGCACGGG..........................................................................................1811.001.00-----------------------------------------------------------------------------------------------------------------------1.00---------------
......................................................................ACCCGCCCCACCCCCCCCGCC...............................................................................................................................................................211.000.00--1.00------------------------------------------------------------------------------------------------------------------------------------
......CCCGCGGCGTCCGGCGGC..................................................................................................................................................................................................................................1811.001.00-----------------------------------------------1.00---------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................CGCGGAAGACCGTGGCGGGGCTT2311.001.00------------------------------------------------------------------------------------------------1.00--------------------------------------
.......................................................................CCCGCCCCACCCCCCCTGC................................................................................................................................................................191.000.00------1.00--------------------------------------------------------------------------------------------------------------------------------
.TCCGCCCCGCGGCGTCCGGCG....................................................................................................................................................................................................................................2111.001.00-------1.00-------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................GGGCGCCCTGAGGAAGGGCACGGGCC........................................................................................2611.001.00-----------------------------------------------------------1.00---------------------------------------------------------------------------
......................................................................ACCCGCCCCACCCCCCCTGC................................................................................................................................................................201.000.00---------------------------------------------------------1.00-----------------------------------------------------------------------------
......................................................GTCTGGGAAGCTGCCGACCCG...............................................................................................................................................................................2111.001.00-------------------------------------------------------------------------------------------------------------------------1.00-------------
.........................................................................CGCCCCACCCCCCCGGTCCC.............................................................................................................................................................201.000.00-------------1.00-------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................CCCTGAGGAAGGGCACGGGCCGCG.....................................................................................2411.001.00---------------------------------------------------------------------------------------------------------1.00-----------------------------
...........................................................................................................GGGATGGGCCGCGGGCCCGGT..........................................................................................................................2111.005.00----------------------------------1.00----------------------------------------------------------------------------------------------------
......................................................................ACCCGCCCCACCCCCCCCCC................................................................................................................................................................201.000.00-----------------------------------------1.00---------------------------------------------------------------------------------------------
..........................................................................GCCCCACCCCCCCGGCCCC.............................................................................................................................................................191.000.00----------------------1.00----------------------------------------------------------------------------------------------------------------
...................................TCTGGCGGGCCGCAGGGCA....................................................................................................................................................................................................191.000.00--------------------------------------------------------------------------------1.00------------------------------------------------------
............................................................................................................................CGGAAGGCGGCGGGGG..............................................................................................................161.000.00--------------------------------------------------------------------------------------------------------------------------1.00------------
................................GGGTCTGGCGGGCCGC..........................................................................................................................................................................................................1611.001.00---------------1.00-----------------------------------------------------------------------------------------------------------------------
............................................................................................................................................................................................TGCAGGCTCGGGCTTCGAG...........................................191.000.00----------------------------------------------1.00----------------------------------------------------------------------------------------
..............................GAGGGTCTGGCGGGCCGC..........................................................................................................................................................................................................1811.001.00------------------------------------------------------------------------------------------1.00--------------------------------------------
............................................................................................................GGATGGGCCGCGGGCCGG............................................................................................................................181.000.00------1.00--------------------------------------------------------------------------------------------------------------------------------
.............................................................................CCACCCCCCCGGTGCGGAAAGCC......................................................................................................................................................231.000.00----------------------------------------------------------------------------------------------------------1.00----------------------------
................CCGGCGGCCGCGCCGAGGGTC.....................................................................................................................................................................................................................2111.001.00-----------------------1.00---------------------------------------------------------------------------------------------------------------
............................................................................................................GGATGGGCCGCGGGCCGGCC..........................................................................................................................201.000.00-----------------------------------------------------------------------------------1.00---------------------------------------------------
...............................................................................................................TGGGCCGCGGGCCCGG...........................................................................................................................1611.001.00---------------1.00-----------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................CCGGGCTGCAGGCTCGGGCTTC..............................................2211.001.00-----1.00---------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................GATGGGCCGCGGGCC..............................................................................................................................1540.750.75----------------------------------------------0.50---0.25------------------------------------------------------------------------------------
............................CCGAGGGTCTGGCGGGC.............................................................................................................................................................................................................1720.500.50-------------------------------------------------------------------------------------------------------------------------------0.50-------
..........................................................................................GCGGAAGAGCCGGGC.................................................................................................................................................1520.500.50-----------------------------------------------------------------------------------------------------------------------------0.50---------
............................................................................................................GGATGGGCCGCGGGC...............................................................................................................................1540.500.50------------------------------------------------0.25----------------------------------------------------------------------------------0.25---
..............................................................................................................................................CCTGAGGAAGGGCACGG...........................................................................................1720.500.50------------------------------------------------------------------------------------------------------------------------------0.50--------
...........................GCCGAGGGTCTGGCGGGC.............................................................................................................................................................................................................1820.500.50--------------------0.50------------------------------------------------------------------------------------------------------------------
..........................CGCCGAGGGTCTGGCGGG..............................................................................................................................................................................................................1820.500.50-----------------------------------------------0.50---------------------------------------------------------------------------------------
.......................................................................CCCGCCCCACCCCCCCG..................................................................................................................................................................1750.400.40-------------------------------------------------------------------------------------------------------------------------------------0.200.20
.......................................................................CCCGCCCCACCCCCCCGCCCC..............................................................................................................................................................2150.400.40---------------------------------------------------------------------------------------------------------------------------------0.40-----
.............................................................................................................GATGGGCCGCGGGCCGGT...........................................................................................................................1840.250.75------------------------------------------------------------------------------------------------------------------------------------0.25--
.............................................................................................................GATGGGCCGCGGGCCGG............................................................................................................................1740.250.75---------------------0.25-----------------------------------------------------------------------------------------------------------------
.................CGGCGGCCGCGCCGA..........................................................................................................................................................................................................................1540.250.25-------------------0.25-------------------------------------------------------------------------------------------------------------------
.............................................................................................................GATGGGCCGCGGGCCGGTC..........................................................................................................................1940.250.75--------------------------------------------------------------------------------------------------------------------------------0.25------
.............................................................................................................GATGGGCCGCGGGCCG.............................................................................................................................1640.250.75----------------------------------------------0.25----------------------------------------------------------------------------------------
................CCGGCGGCCGCGCCGGGG........................................................................................................................................................................................................................1850.200.20-------------------0.20-------------------------------------------------------------------------------------------------------------------
................................................................................................................GGGCCGCGGGCCCGG...........................................................................................................................1550.200.20---------------------------------------------------0.20-----------------------------------------------------------------------------------
................CCGGCGGCCGCGCCGGGGA.......................................................................................................................................................................................................................1950.200.20-------------------0.20-------------------------------------------------------------------------------------------------------------------
................CCGGCGGCCGCGCCG...........................................................................................................................................................................................................................1550.200.20----------------------------------------------------0.20----------------------------------------------------------------------------------
..............................GAGGGTCTGGCGGGC.............................................................................................................................................................................................................1560.170.17--------------------------------------------------------------------------------------------------------------------------------0.17------
........................................................................CCGCCCCACCCCCCCG..................................................................................................................................................................1690.110.11----------------------0.11----------------------------------------------------------------------------------------------------------------

Antisense strand
GTCCGCCCCGCGGCGTCCGGCGGCCGCGCCGAGGGTCTGGCGGGCCGCAGGTCAGTCTGGGAAGCTGCCGACCCGCCCCACCCCCCCGGTGCGGAAGAGCCGGGCGCGGGATGGGCCGCGGGCCCGGAAGGCGGCGGGGCGCCCTGAGGAAGGGCACGGGCCGCGCTGGTAACGCGCGCGCCCCGGGCTGCAGGCTCGGGCTTCGGGCCGATTTGGGGTCTCCAGGCCGCGGAAGACCGTGGCGGGGCTT
..................................................(((..((((((..........(((((((((.(((((((((........))))))...))).))))..))))))))))).)))......................................................................................................................
..................................................51...............................................................................132....................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR040036(GSM532921)
G243N. (cervix)		SRR040020(GSM532905)
G699N_2. (cervix)		TAX577589(Rovira)
total RNA. (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577741(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029124(GSM416753)
HeLa. (hela)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR040022(GSM532907)
G575N. (cervix)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		GSM532876(GSM532876)
G547T. (cervix)		SRR040010(GSM532895)
G529N. (cervix)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040011(GSM532896)
G529T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR040008(GSM532893)
G727N. (cervix)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM532879(GSM532879)
G659N. (cervix)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR040015(GSM532900)
G623T. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR040040(GSM532925)
G612N. (cervix)		GSM532889(GSM532889)
G576N. (cervix)		SRR037936(GSM510474)
293cand1. (cell line)		SRR040030(GSM532915)
G013N. (cervix)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)		SRR040029(GSM532914)
G026T. (cervix)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783GSM532871(GSM532871)
G652N. (cervix)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		GSM532874(GSM532874)
G699T. (cervix)		SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)		GSM416733(GSM416733)
HEK293. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM339994(GSM339994)
hues6. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038859(GSM458542)
MM386. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR038863(GSM458546)
MM603. (cell line)		GSM532887(GSM532887)
G761N. (cervix)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR040012(GSM532897)
G648N. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM532877(GSM532877)
G691N. (cervix)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
........................................................................................................................................................GGCACGGGCCGCGCTTTGG............................................................................... 192.000.00-------------------------------------------------------------------------------------1.00-----1.00-------------------------------------------
.........................................................................CGCCCCACCCCCCCGCAA............................................................................................................................................................... 181.000.00----------------------------------------------------------------------------1.00----------------------------------------------------------
...................................................................CCGACCCGCCCCACCGGGG.................................................................................................................................................................... 191.000.00-----------------------------------------------------------------------------------------1.00---------------------------------------------
............................................................................................................................................................................CGCGCGCGCCCCGGGCCG............................................................ 181.000.00------------------1.00--------------------------------------------------------------------------------------------------------------------
........................................................................CCGCCCCACCCCCCCTC................................................................................................................................................................. 171.000.00------------------------1.00--------------------------------------------------------------------------------------------------------------
...................................................TCAGTCTGGGAAGCTAGC..................................................................................................................................................................................... 181.000.00---------------------------------------------------------------------------------------1.00-----------------------------------------------
................................................AGGTCAGTCTGGGAAGCTGTCAT................................................................................................................................................................................... 231.000.00--------------------------------------------------------------------------------------------------------------1.00------------------------
.......CCGCGGCGTCCGGCGGCCCG............................................................................................................................................................................................................................... 201.000.00----1.00----------------------------------------------------------------------------------------------------------------------------------
...........................................................................CCCCACCCCCCCGGTGAT............................................................................................................................................................. 181.000.00-------------------1.00-------------------------------------------------------------------------------------------------------------------
...................................................TCAGTCTGGGAAGCTGTGCC................................................................................................................................................................................... 201.000.00--------------------------------------------------------------------------1.00------------------------------------------------------------
......................................................................ACCCGCCCCACCCCCCCGGG................................................................................................................................................................ 201.000.00---------------------------------------------------------------------------1.00-----------------------------------------------------------
...........................................................GGAAGCTGCCGACCCAGGT............................................................................................................................................................................ 191.000.00--------------------------------1.00------------------------------------------------------------------------------------------------------
.............................................................................................................................................................................GCGCGCGCCCCGGGCCGC........................................................... 181.000.00------------------1.00--------------------------------------------------------------------------------------------------------------------
..CCGCCCCGCGGCGTCCC....................................................................................................................................................................................................................................... 171.000.00------------------------1.00--------------------------------------------------------------------------------------------------------------
............GCGGCCGCCGGACGC............................................................................................................................................................................................................................... 1540.250.25-------------------------------------------------0.25-------------------------------------------------------------------------------------
.............CGCGGCCGCCGGACG.............................................................................................................................................................................................................................. 1540.250.25----------------------------------------------------------------------------------------------------------------------------------0.25----
..................................................................................................................................AGGGCGCCCCGCCGC......................................................................................................... 1550.200.20------------------------------------------------0.20--------------------------------------------------------------------------------------