ID: uc002uvn.3_intron_8_0_chr2_201324551_f.3p
GENE: (9)
chr2:201331813-201332062+


(2)
B-CELL 		(3)
BRAIN 		(5)
BREAST 		(6)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(2)
HELA 		(6)
LIVER 		(5)
OTHER 		(8)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
ATTGGTGGAGGAGGACAGGAGGAACTGGGTTGTTGGTAATAGGCACAGAGGGTGAACCCGCCTCCATGACCAACTCAGAAAACACAGTCGTGGTCCAACAAAGCAATCAGTCTGTGGAGTGAGAACTGATTCCAAGAAATTAGGTTATTTAATATGTTTCAATCTCTGGCCCTAATGTATGACTCCTCCTTATTTGGCAGTGGAAATCCTGACTGCTCGTCAGAAGAAAGCAGAAGAACTAAAGAGACTC
...................................................................................................................((((.(((..((((((......))))))........((((((((((.....)))....)))))))..))))))).............................................................
..................................................................................................................115..................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189785SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		SRR189783GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
.......................................................................................................................TGAGAACTGATTCCATAG.................................................................................................................18111.000.0084.0017.00-5.00----2.00--1.00--1.00---------------------1.00------
.......................................................................................................................TGAGAACTGATTCCATAGG................................................................................................................195.000.00-----------------1.00-------1.00---------1.00-1.00-1.00---
.......................................................................................................................TGAGAACTGATTCCATAA.................................................................................................................182.000.002.00------------------------------------------
......................................................................................................................................................................................................................................CAGAAGAACTAAAGAGACTC2011.001.00------1.00------------------------------------
......................................................................................................................................................................................................................GCTCGTCAGAAGAAAGCAGAAGAA............2411.001.00--1.00----------------------------------------
..........................................................................................................................................................................................................................GTCAGAAGAAAGCAGAAGAACT..........2211.001.00----------1.00--------------------------------
..............................................................................................................................................................................................................................GAAGAAAGCAGAAGAACTAAAGAGACT.2711.001.00--1.00----------------------------------------
....................................................................................................................................................................................................................CTGCTCGTCAGAAGAAAGC...................1911.001.00--1.00----------------------------------------
................................................................................................................................................................................................................CTGACTGCTCGTCAGAAGAAAGCAGAAG..............2811.001.00--------------------------------------1.00----
...........................................................................................................................................................................................................AAATCCTGACTGCTCGTCAGA..........................2111.001.00-------------1.00-----------------------------
......................................................................................................................................................................................................................GCTCGTCAGAAGAAAGCAG.................1911.001.00---------1.00---------------------------------
..............................................................................................................................................................................ATGTATGACTCCTCCTTATTTGGCA...................................................2511.001.00--------------------------------1.00----------
.......................................................................................................................TGAGAACTGATTCCAGAG.................................................................................................................181.000.001.00------------------------------------------
........................................................................................................................................................................................................................TCGTCAGAAGAAAGCAGAAGAACTAA........2611.001.00----1.00--------------------------------------
.............................................................................................................................................................................................................................AGAAGAAAGCAGAAGACTCC.........201.000.00----------------1.00--------------------------
....................................................................................................AAGCAATCAGTCTGTGGAGTGAGAAC............................................................................................................................2611.001.00--1.00----------------------------------------
.....................................................................................................................................................................................................................TGCTCGTCAGAAGAAAGCA..................1911.001.00---------1.00---------------------------------
........................................................................................................AATCAGTCTGTGGAGTGAGAACTG..........................................................................................................................2411.001.00----------------------------1.00--------------
.......................................................................................................................TGAGAACTGATTCCATAGT................................................................................................................191.000.001.00------------------------------------------
...........................................................................................................................................................................................................................TCAGAAGAAAGCAGAAGAACTAAAGAGAC..2911.001.00---------------------1.00---------------------
...........................................................................................................................................................................................................................TCAGAAGAAAGCAGAAGAACTA.........2211.001.00--1.00----------------------------------------
...................................................................................................................................................................................................................ACTGCTCGTCAGAAGAAAGCA..................2111.001.00-------1.00-----------------------------------
............................................................................................................AGTCTGTGGAGTGAGCT.............................................................................................................................171.000.00------------1.00------------------------------
........................................................................................................................................................................................................................TCGTCAGAAGAAAGCAGAAGAA............2211.001.00-------1.00-----------------------------------
..................................................................................................................................................................................................................................AAAGCAGAAGAACTAAAGAGACT.2311.001.00--1.00----------------------------------------
....................................................................ACCAACTCAGAAAACCCCT...................................................................................................................................................................191.000.00---------------------------1.00---------------
............................................................................................................................................................................................................................CAGAAGAAAGCAGAACTA............181.000.00--------------------------1.00----------------
................................................................................................................................................................................................................................AGAAAGCAGAAGAACTAAAGAGACT.2511.001.00----------------------------------1.00--------
..........................................................................................................................................................................................................................GTCAGAAGAAAGCAGAAGAACTAAAG......2611.001.00--1.00----------------------------------------
............................................................................................................................................................................................................AATCCTGACTGCTCGTCAGA..........................2011.001.00---------------1.00---------------------------
.................................................................................................................................................................................................................................GAAAGCAGAAGAACTAAAGAGAC..2311.001.00----1.00--------------------------------------
.........................................................................................................................................................................................................................CGTCAGAAGAAAGCAGAAGAACTAAAGAGA...3011.001.00------------------------------1.00------------
.............................................................................................TCCAACAAAGCAATCAGTCTGTGGAG...................................................................................................................................2611.001.00------------------------1.00------------------
.......................................................................................................................TGAGAACTGATTCCACAG.................................................................................................................181.000.001.00------------------------------------------
...........................................................................................................................................................................................................................TCAGAAGAAAGCAGAAGAACTAT........2311.001.00--------------------1.00----------------------
.............................................................................................................................................................................................................................AGAAGAAAGCAGAAGAACTAA........2111.001.00----1.00--------------------------------------
.........................TGGGTTGTTGGTAATA.................................................................................................................................................................................................................1611.001.00-------------------1.00-----------------------
......................................................................................................................................................................................................................................CAGAAGAACTAAAGAGACT.1911.001.00--1.00----------------------------------------
..........................................................................................................................................................................................................................GTCAGAAGAAAGCAGAAGAACTA.........2311.001.00-------------------------------1.00-----------
...........................................................................................................................................................................................................................TCAGAAGAAAGCAGAAACA............191.000.00---------------------------------1.00---------
.......................................................................................................................................................................................................................................AGAAGAACTAAAGAGTCT.181.000.00------1.00------------------------------------
......................................................................................................................................................................................................AGTGGAAATCCTGAC.....................................1560.170.17------------------------------------------0.17
......................................................................................................................................................................................................AGTGGAAATCCTGACAGCT.................................1960.170.17----------------------------------------0.17--
........................................................................................................................................................................................................TGGAAATCCTGACTGC..................................1660.170.17-----------------------------------------0.17-

Antisense strand
ATTGGTGGAGGAGGACAGGAGGAACTGGGTTGTTGGTAATAGGCACAGAGGGTGAACCCGCCTCCATGACCAACTCAGAAAACACAGTCGTGGTCCAACAAAGCAATCAGTCTGTGGAGTGAGAACTGATTCCAAGAAATTAGGTTATTTAATATGTTTCAATCTCTGGCCCTAATGTATGACTCCTCCTTATTTGGCAGTGGAAATCCTGACTGCTCGTCAGAAGAAAGCAGAAGAACTAAAGAGACTC
...................................................................................................................((((.(((..((((((......))))))........((((((((((.....)))....)))))))..))))))).............................................................
..................................................................................................................115..................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189785SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		SRR189783GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		GSM532874(GSM532874)
G699T. (cervix)		SRR191500(GSM715610)
7genomic small RNA (size selected RNA from to. (breast)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029130(GSM416759)
DLD2. (cell line)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
...................................................GTGAACCCGCCTCCAGTGG.................................................................................................................................................................................... 191.000.001.00------------------------------------------
......................................................................................................................................................................................................AGTGGAAATCCTGACCGTT................................. 1961.000.00----------------------1.00--------------------
.......................................................................................TTGCTTTGTTGGACCACGA................................................................................................................................................ 1911.001.00-----1.00-------------------------------------
..........................................................................................CTGATTGCTTTGTTGGACCA............................................................................................................................................ 2011.001.00-----1.00-------------------------------------
..............................................................................................................................................................TCAATCTCTGGCCCTGGGC......................................................................... 191.000.00-----------------------1.00-------------------
...............CAGGAGGAACTGGGTTCCAC....................................................................................................................................................................................................................... 201.000.00------------------1.00------------------------
..........................................................................................ACTGATTGCTTTGTTGGACCA........................................................................................................................................... 2111.001.00-----1.00-------------------------------------
......................................................................................................................................................AATATGTTTCAATCTTTGG................................................................................. 191.000.00-----------------------------1.00-------------