ID: uc002uvn.3_intron_7_0_chr2_201305508_f.3p
GENE: (8)
chr2:201324292-201324541+


(4)
BREAST 		(5)
CELL-LINE 		(1)
CERVIX 		(1)
HELA 		(5)
LIVER 		(3)
OTHER 		(2)
SKIN 		(1)
TESTES 		(2)
UTERUS

Sense strand
TATGTAATCCTTGGGAACATCCCTTCGATGTTGCCTCATTTTTTGGAGAGGCAGAGTGTACTGCTGGCATTGTAGCATAGAAATATTTATGGTAATTTTGTATTTTGTTTAATGAAAATAATTTTACTTTCAGTGCTTATTAAAAGTTTATCTTTGATTAAGCATTCTTTGCTTTTGTTTTTGTTTTTGTTTTTCCCCAGCATCATTGACAAAGAAGTTTCATTAATGGCAGAAATGGATAAAGTTAAAG
.........................................................................((((.(((.........(((((..((((.(((........))).))))..)))))....(((((((...((((.....))))...)))))))))).)))).............................................................................
...................................................................68..................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532880(GSM532880)
G659T. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189785TAX577741(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
...........................................................................................................................................................................CTTTTGTTTTTGTTTTTGTTTCGG.......................................................246.000.003.003.00----------------------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTTTGTTTTGAC......................................................285.000.003.002.00----------------------
..........................................................................................................................................................................GCTTTTGTTTTTGTTTTTGTTTCGG.......................................................255.000.002.003.00----------------------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTTTGTTTTTGG......................................................284.000.001.003.00----------------------
...........................................................................................................................................................................CTTTTGTTTTTGTTTTTGTTCTGG.......................................................244.000.001.003.00----------------------
........................................................................TAGCATAGAAATATTGGCA...............................................................................................................................................................194.000.00--------1.00--1.00---1.00-----1.00--
........................................................................TAGCATAGAAATATTGGC................................................................................................................................................................183.000.00-----------------1.00-1.00--1.00-
...........................................................................................................................................................................CTTTTGTTTTTGTTTTTGTTTTTCCC.....................................................2613.003.003.00-----------------------
.........................................................................................................................................................................TGCTTTTGTTTTTGTTTTTGTTTTTCCC.....................................................2813.003.002.001.00----------------------
............................................................................................................................................................................TTTTGTTTTTGTTTTTGTTTTTCCGC....................................................263.000.002.001.00----------------------
...........................................................................................................................................................................CTTTTGTTTTTGTTTTTGTTTTTCCCTTG..................................................2913.003.002.00-1.00---------------------
.......................................................................................................................................................................TTTGCTTTTGTTTTTGTTTTTGTTTTTTTG.....................................................302.000.00-1.001.00---------------------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTTTGTTTTGGC......................................................282.000.001.001.00----------------------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTCTGG............................................................222.000.002.00-----------------------
............................................................................................................................................................................TTTTGTTTTTGTTTTTGTTTTTCCCCTG..................................................282.000.00-1.001.00---------------------
......................................................................................................................................................................CTTTGCTTTTGTTTTTGTTTTTGG............................................................242.000.002.00-----------------------
..........................................................................................................................................................................GCTTTTGTTTTTGTTTTTGTTCTGG.......................................................252.000.001.001.00----------------------
............................................................................................................................................................................TTTTGTTTTTGTTTTTGTTCCAG.......................................................232.000.00-1.001.00---------------------
.......................................................................................................................................................................TTTGCTTTTGTTTTTGTTTTTGTTTTTA.......................................................282.000.002.00-----------------------
....................................................................................................................................................................TTCTTTGCTTTTGTTTTTGTTTTTGTTTTGC.......................................................312.000.002.00-----------------------
.........................................................................................................................................................................TGCTTTTGTTTTTGTTTTTGTTTTTGGC.....................................................282.000.002.00-----------------------
.............................................................................................................................................................................TTTGTTTTTGTTTTTGTTTTTCCCCCC..................................................272.000.001.001.00----------------------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTTTGTTTTTCCC.....................................................2912.002.002.00-----------------------
.............................................................................................................................................................................................................................ATTAATGGCAGAAATGGATAA........2112.002.00---2.00--------------------
.............................................................................................................................................................................................................................ATTAATGGCAGAAATGGATAAAGTTAA..2712.002.00---2.00--------------------
.........................................................................................................................................................................TGCTTTTGTTTTTGTTTTTGTCTTT........................................................252.000.002.00-----------------------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTTTGTTTTCGTT.....................................................292.000.002.00-----------------------
...........................................................................................................................................................................CTTTTGTTTTTGTTTTTGTTTTCAGT.....................................................262.000.00-2.00----------------------
.............................................................................................................................................................................TTTGTTTTTGTTTTTGTTTTTCCCTCG..................................................271.000.001.00-----------------------
..............................................................GCTGGCATTGTAGCATAGAA........................................................................................................................................................................2011.001.00-----1.00------------------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTTTGTCT..........................................................241.000.00--1.00---------------------
........................................................................TAGCATAGAAATATTGGA................................................................................................................................................................181.000.00----1.00-------------------
..........................................................................................................................................................................GCTTTTGTTTTTGTTTTTGTTTTATC......................................................261.000.001.00-----------------------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTTTGTTTCTGG......................................................281.000.00-1.00----------------------
.......................................................................................................................................................................TTTGCTTTTGTTTTTGTTTTTACC...........................................................241.000.00-1.00----------------------
.....................................................................................................................................................................TCTTTGCTTTTGTTTTTGTTTTTTTG...........................................................261.000.00-1.00----------------------
............................................................................................................................................................................TTTTGTTTTTGTTTTTGTTCTCG.......................................................231.000.001.00-----------------------
..............................................................................................................................................................................................................................TTAATGGCAGAAATGGATAA........2011.001.00---1.00--------------------
.................................................................................................................................................................................TTTTTGTTTTTGTTTTTCCGGGG..................................................231.000.001.00-----------------------
.............................................................................................................................................................................TTTGTTTTTGTTTTTGTTTTTCCTTGG..................................................271.000.001.00-----------------------
...........................................................................................................................................................................CTTTTGTTTTTGTTTTTGTTTTTCAGGG...................................................281.000.001.00-----------------------
............................................................................................................................................................................TTTTGTTTTTGTTTTTGTTCGG........................................................221.000.001.00-----------------------
..............................................................................................................................................................................TTGTTTTTGTTTTTGTTTTTCCCCAGAA................................................281.000.00---------1.00--------------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTCTGC.............................................................211.000.001.00-----------------------
...........................................................................................................................................................................CTTTTGTTTTTGTTTTTGTTCCGC.......................................................241.000.001.00-----------------------
.....................................................................................................................................................ATCTTTGATTAAGCAAAAA..................................................................................191.000.00-------------1.00----------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTTTGTTTTGCAC.....................................................291.000.001.00-----------------------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTTTGTTTTTCTGAG...................................................311.000.00-1.00----------------------
.......................................................................................................................................................................TTTGCTTTTGTTTTTGTTTTTGTTTTCCTT.....................................................301.000.001.00-----------------------
.....................................................................................................................................................................TCTTTGCTTTTGTTTTTGTTTTTCCC...........................................................261.000.001.00-----------------------
........................................................................................................................................................................................................CATCATTGACAAAGAAGT................................1811.001.00-------1.00----------------
.........................................................................................................................................................................TGCTTTTGTTTTTGTTTTTGTTTTCTGA.....................................................281.000.00-1.00----------------------
...........................................................................................................................................................................CTTTTGTTTTTGTTTTTGTTTTTCTCTG...................................................281.000.00--1.00---------------------
.........................................................................................................................................................................TGCTTTTGTTTTTGTTTTTGTTTTCG.......................................................261.000.001.00-----------------------
......................................................................................................................................................................CTTTGCTTTTGTTTTTGTTTTTGTTTTTAG......................................................301.000.00--1.00---------------------
.......................................................................................................................................................................TTTGCTTTTGTTTTTGTTTTTGTTTTTCCC.....................................................3011.001.00-1.00----------------------
............................................................................................................................................................................TTTTGTTTTTGTTTTTGTTCGAG.......................................................231.000.00-1.00----------------------
....................................................................................................................................................................TTCTTTGCTTTTGTTTTAGTT.................................................................211.000.001.00-----------------------
.........................................................................................................................................................................TGCTTTTGTTTTTGTTTTTGTTTTAG.......................................................261.000.001.00-----------------------
.............................................................................................................................................................................TTTGTTTTTGTTTTTGTTTTTCCCAGC..................................................271.000.001.00-----------------------
.......................................................................................................................................................................TTTGCTTTTGTTTTTGTTTTTGTTTCC........................................................271.000.00-1.00----------------------
...........................................................................................................................................................................CTTTTGTTTTTGTTTTTGTTTTCTTG.....................................................261.000.001.00-----------------------
.....................................................................................................................................................................TCTTTGCTTTTGTTTTTGTTTTTGTTTTTG.......................................................301.000.00--1.00---------------------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTTTGTTTTTTAG.....................................................291.000.001.00-----------------------
...........................................................................................................................................................................CTTTTGTTTTTGTTTTTGTTTTTCACGG...................................................281.000.00--1.00---------------------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTTTGTTTTTCCTTCC..................................................3211.001.001.00-----------------------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTTTGTTTGGAG......................................................281.000.00-1.00----------------------
.........................................................................................................................................................................TGCTTTTGTTTTTGTTTTTGTTTTTTGC.....................................................281.000.00-1.00----------------------
........................................................................TAGCATAGAAATATTGG.................................................................................................................................................................171.000.00----------------1.00-------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTTTGTTTTGC.......................................................271.000.001.00-----------------------
.......................................................................................................................................................................TTTGCTTTTGTTTTTGTTTCTCG............................................................231.000.00-1.00----------------------
.....................................................................................................................................................................TCTTTGCTTTTGTTTTTGTTTTGA.............................................................241.000.00-1.00----------------------
....................................................................................................................................................................TTCTTTGCTTTTGTTTTTGTTTTTGTTTTGTT......................................................321.000.00-1.00----------------------
.................................................................................................................................................................................TTTTTGTTTTTGTTTTTCCCTCC..................................................231.000.001.00-----------------------
.....................................................................................................................................................................TCTTTGCTTTTGTTTTTGTTTGTT.............................................................241.000.00-1.00----------------------
...........................................................................................................................................................................CTTTTGTTTTTGTTTTTGTTTTTCACTG...................................................281.000.00--1.00---------------------
.........................................................................................................................................................................TGCTTTTGTTTTTGTTTTTGTTTTTA.......................................................261.000.00-1.00----------------------
....................................................................................ATTTATGGTAATTTTCTCA...................................................................................................................................................191.000.00----------1.00-------------
.........................................................................................................................................................................TGCTTTTGTTTTTGTTTTTGTTTCGG.......................................................261.000.00-1.00----------------------
..........................................................................................................................................................................GCTTTTGTTTTTGTTTTTGTTTATG.......................................................251.000.001.00-----------------------
.........................................................................................................................................................................TGCTTTTGTTTTTGTTTTTGTTTTTCC......................................................2711.001.001.00-----------------------
.................................................................................................................................................................................................................CAAAGAAGTTTCATTATG.......................181.000.00------------1.00-----------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTTTGTAGGG........................................................261.000.001.00-----------------------
.......................................................................................................................................................................TTTGCTTTTGTTTTTGTTTTTGTTTTAG.......................................................281.000.00-1.00----------------------
.......................................................................................................................................................................TTTGCTTTTGTTTTTGTTTCC..............................................................211.000.00-1.00----------------------
.............................................................................................................................................................................TTTGTTTTTGTTTTTGTTTTTCCCAGTC.................................................281.000.00-1.00----------------------
.....................................................................................................................................................................TCTTTGCTTTTGTTTTTGTTTTTTTTC..........................................................271.000.001.00-----------------------
...............................................................................................................................................................................TGTTTTTGTTTTTGTTTTTCCTTGT..................................................251.000.00-1.00----------------------
....................................................................................................................................................................TTCTTTGCTTTTGTTTTTGTTTTTTT............................................................261.000.00-1.00----------------------
.........................................................................................................................................................................TGCTTTTGTTTTTGTTTTTGTTTTCCC......................................................271.000.001.00-----------------------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTTTGTTTTTCC......................................................2811.001.001.00-----------------------
..............................TTGCCTCATTTTTTGCGTT.........................................................................................................................................................................................................191.000.00-1.00----------------------
.........................................................................................................................................................................TGCTTTTGTTTTTGTTTTTGTTTTGTTA.....................................................281.000.00-1.00----------------------
.......................................................................................................................................................................TTTGCTTTTGTTTTTGTTTTTGTTTTTAG......................................................291.000.00--1.00---------------------
...........................................................................................................................................................................................................................TCATTAATGGCAGAAATGGATA.........2211.001.00------------------1.00-----
............................................................................................................................................................................TTTTGTTTTTGTTTTTGTTTTTCCTGTT..................................................281.000.001.00-----------------------
.....................................................................................................................................................................TCTTTGCTTTTGTTTTTGTTTTTGTTTG.........................................................281.000.00--1.00---------------------
.....................................................................................................................................................................TCTTTGCTTTTGTTTTTGTTTTTTTT...........................................................261.000.001.00-----------------------
........................................................................................................................................................................TTGCTTTTGTTTTTGTTTTTGTTTTTCTT.....................................................291.000.00-1.00----------------------
.......................................................................................................................................................................TTTGCTTTTGTTTTTGTTTTTGTTTTGAC......................................................291.000.001.00-----------------------
...................................................................................................................................................................................................................AAGAAGTTTCATTAATGGCA...................2011.001.00--------------------1.00---
...........................................................................................................................................................................CTTTTGTTTTTGTTTTTGTTTTCAC......................................................251.000.001.00-----------------------
................................................AGGCAGAGTGTACTGGATA.......................................................................................................................................................................................191.000.00----1.00-------------------
...................................................................................................................................................................................TTTGTTTTTGTTTTTCCGGG...................................................201.000.001.00-----------------------
.....................................................................................................................................................................TCTTTGCTTTTGTTTTTGTTTTTGTTTTTCCC.....................................................3211.001.00-1.00----------------------
....................................................................................................................................................................TTCTTTGCTTTTGTTTTTGTTTCTT.............................................................251.000.001.00-----------------------
................................................................................................................................................................................................................................AATGGCAGAAATGGATAA........1820.500.50-----0.50------------------
.......................................................................................................................................................................TTTGCTTTTGTTTTTGTTTTTGTTTTTC.......................................................2820.500.50-0.50----------------------
....................................CATTTTTTGGAGAGGCA.....................................................................................................................................................................................................1730.330.33-----------------------0.33
.........................................................................................................................................................................TGCTTTTGTTTTTGTTTTTGTTTTTC.......................................................2630.330.33-0.33----------------------
............................TGTTGCCTCATTTTTT..............................................................................................................................................................................................................1670.140.14--0.14---------------------

Antisense strand
TATGTAATCCTTGGGAACATCCCTTCGATGTTGCCTCATTTTTTGGAGAGGCAGAGTGTACTGCTGGCATTGTAGCATAGAAATATTTATGGTAATTTTGTATTTTGTTTAATGAAAATAATTTTACTTTCAGTGCTTATTAAAAGTTTATCTTTGATTAAGCATTCTTTGCTTTTGTTTTTGTTTTTGTTTTTCCCCAGCATCATTGACAAAGAAGTTTCATTAATGGCAGAAATGGATAAAGTTAAAG
.........................................................................((((.(((.........(((((..((((.(((........))).))))..)))))....(((((((...((((.....))))...)))))))))).)))).............................................................................
...................................................................68..................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		TAX577739(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532880(GSM532880)
G659T. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189785TAX577741(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		TAX577743(Rovira)
total RNA. (breast)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
..........................................................................................................................................................................................................................................ATGGATAAAGTTAAAGAAG 191.000.00--------------1.00---------
.....................................................................................................ATTTTGTTTAATGAAACTG.................................................................................................................................. 191.000.00------1.00-----------------