ID: uc002uue.2_intron_4_0_chr2_198263306_r.5p
GENE: (20)
chr2:198264579-198264828-


(1)
AGO2.ip 		(3)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(20)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(6)
LIVER 		(1)
OTHER 		(2)
RRP40.ip 		(15)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AGTATTGGGCAGCATTCTTGGAGCACTGAAGGCCATTGTAAATGTCATAGGTATGGAATTTGCTGGTTACATAAGACTTTTTCTTGTTTTAACTTTCTTTTTCTTTTTTTTTTCGTAAGTAAAATCTTATTTAGGAGTTGGGAGGTTTTTGTTAGCTTTTTAAAAGCACTTCAAGATTGTAGTTAAGTCGGGGGATGTCACAAAAGTCTTGTTTCCCAAAACCCATTTATATTTTACTTTAAAGAGAAAA
......................................................((((......(((((.((((((.....))))))..)))))......))))..................................................................................................................................................
..................................................51....................................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR343335SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR040015(GSM532900)
G623T. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.............................AGGCCATTGTAAATGTCATAG........................................................................................................................................................................................................2118.008.00-------8.00--------------------------------------------------
......................................................................................TTTTAACTTTCTTTTTCTTTTTTTTTTCG.......................................................................................................................................2918.008.00-4.001.003.00------------------------------------------------------
......................................................................................TTTTAACTTTCTTTTTCTTTTTTTTTCG........................................................................................................................................287.000.00-1.004.001.00-1.00----------------------------------------------------
......................................................................................TTTTAACTTTCTTTTTCTTTTTTTTCG.........................................................................................................................................277.000.00-3.003.001.00------------------------------------------------------
............................................................................................CTTTCTTTTTCTTTTTTTTTTCCAG.....................................................................................................................................256.000.00-1.004.00--1.00----------------------------------------------------
............................................................................................CTTTCTTTTTCTTTTTTTTTTAAAG.....................................................................................................................................256.000.00-1.002.00--2.001.00---------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTCTTG.......................................................................................................................................245.000.00-2.00-2.00-1.00----------------------------------------------------
............................................................................................CTTTCTTTTTCTTTTTTTTTTCTAG.....................................................................................................................................255.000.00--1.002.00-2.00----------------------------------------------------
............................................................................................CTTTCTTTTTCTTTTTTTTCCAG.......................................................................................................................................235.000.00--2.002.00-1.00----------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTCTTG.........................................................................................................................................225.000.00-3.00-2.00------------------------------------------------------
......................................................................................TTTTAACTTTCTTTTTCTTTTTTTTC..........................................................................................................................................264.000.00------4.00---------------------------------------------------
............................................................................................CTTTCTTTTTCTTTTTTTTTAAAG......................................................................................................................................244.000.00--1.002.00-1.00----------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTCTG.......................................................................................................................................244.000.00-1.00-1.00-2.00----------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTGG........................................................................................................................................233.000.001.00-1.001.00------------------------------------------------------
...............TCTTGGAGCACTGAAGGCCAT......................................................................................................................................................................................................................2113.003.00----------3.00-----------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTTGG.......................................................................................................................................243.000.00--1.00--2.00----------------------------------------------------
..........................................................................................AACTTTCTTTTTCTTTTTTTTTTCTTG.....................................................................................................................................2712.001.00---2.00------------------------------------------------------
..................................................GTATGGAATTTGCTGGAAA.....................................................................................................................................................................................192.000.00----------2.00-----------------------------------------------
.............................................................................................TTTCTTTTTCTTTTTTTTTTCGGCC....................................................................................................................................252.000.002.00---------------------------------------------------------
......................................................................................TTTTAACTTTCTTTTTCTTTTTTT............................................................................................................................................2412.002.00------2.00---------------------------------------------------
...................................................................................................TTTCTTTTTTTTTTCGCAG....................................................................................................................................192.000.002.00---------------------------------------------------------
......................................................................................TTTTAACTTTCTTTTTCTTTTTTTTTCCG.......................................................................................................................................292.000.00-1.00-1.00------------------------------------------------------
....TTGGGCAGCATTCTTGGAGCACTG..............................................................................................................................................................................................................................2412.002.00----2.00-----------------------------------------------------
...........GCATTCTTGGAGCACTGA.............................................................................................................................................................................................................................1812.002.00-----------2.00----------------------------------------------
............................................................................................................................................................................AAGATTGTAGTTAAGTCGGG..........................................................2012.002.00--------1.00--------1.00----------------------------------------
...............TCTTGGAGCACTGAAGGCCACTGT...................................................................................................................................................................................................................2412.001.00----2.00-----------------------------------------------------
..................TGGAGCACTGAAGGCCAT......................................................................................................................................................................................................................1812.002.00-----------------------------1.00--------------1.00-------------
......................................................................................TTTTAACTTTCTTTTTCTTTTTTTCTCG........................................................................................................................................2812.002.00-1.00-1.00------------------------------------------------------
....TTGGGCAGCATTCTTGGAGCACTGAAGGCCACT.....................................................................................................................................................................................................................332.000.00----2.00-----------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTTCTTG.....................................................................................................................................262.000.00-1.001.00-------------------------------------------------------
............CATTCTTGGAGCACTGAAGGCC........................................................................................................................................................................................................................2212.002.00--------2.00-------------------------------------------------
...............TCTTGGAGCACTGAAGGCC........................................................................................................................................................................................................................1912.002.00--------------2.00-------------------------------------------
.GTATTGGGCAGCATTCTTGGAGCACT...............................................................................................................................................................................................................................2612.002.00------------2.00---------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTGGG........................................................................................................................................232.000.002.00---------------------------------------------------------
............................................................................................CTTTCTTTTTCTTTTTTTTTTCCAGG....................................................................................................................................261.000.001.00---------------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTTCCTTG....................................................................................................................................271.000.00-1.00--------------------------------------------------------
..............TTCTTGGAGCACTGAAGGCCATCGC...................................................................................................................................................................................................................251.000.00----1.00-----------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTTCAG......................................................................................................................................251.000.00----1.00-----------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTCG........................................................................................................................................231.000.00-1.00--------------------------------------------------------
..........................................................................................AACTTTCTTTTTCTTTTCG.............................................................................................................................................191.000.00-1.00--------------------------------------------------------
...................GGAGCACTGAAGGCCATTG....................................................................................................................................................................................................................1911.001.00-------------------------------------------1.00--------------
..............................................................................................TTCTTTTTCTTTTTTTTTTCATTG....................................................................................................................................241.000.00--1.00-------------------------------------------------------
................................................................................................CTTTTTCTTTTTTTTTTCAACG....................................................................................................................................221.000.00-1.00--------------------------------------------------------
...............................................................................................TCTTTTTCTTTTTTTTTTCAGGC....................................................................................................................................231.000.001.00---------------------------------------------------------
......................................................................................TTTTAACTTTCTTTTTCTTTTTTTCT..........................................................................................................................................2611.002.00---1.00------------------------------------------------------
............................................................................................CTTTCTTTTTCTTTTTTTTCCG........................................................................................................................................221.000.00-1.00--------------------------------------------------------
.............................................................................................................................................................................AGATTGTAGTTAAGTCGGGGGATGTCA..................................................2711.001.00------------------1.00---------------------------------------
....................GAGCACTGAAGGCCATTG....................................................................................................................................................................................................................1811.001.00------------------------------------------------1.00---------
...............................................................................................TCTTTTTCTTTTTTTTTTCGTTCAG..................................................................................................................................251.000.001.00---------------------------------------------------------
..........................................................................................AACTTTCTTTTTCTTTTTTTTTTGCC......................................................................................................................................261.000.001.00---------------------------------------------------------
..................................................................................................TTTTCTTTTTTTTTTCGTTGGC..................................................................................................................................221.000.00----1.00-----------------------------------------------------
.....TGGGCAGCATTCTTGGAGCACT...............................................................................................................................................................................................................................2211.001.00------------------------1.00---------------------------------
.............................................................................................TTTCTTTTTCTTTTTTTTTTCACG.....................................................................................................................................241.000.00-1.00--------------------------------------------------------
..........................................................................................................................................................................TCAAGATTGTAGTTAAGTCGGGGGATGT....................................................2811.001.00--------1.00-------------------------------------------------
.............ATTCTTGGAGCACTGAAGGCCATCG....................................................................................................................................................................................................................251.000.00----------------------------------------------1.00-----------
....................................................................................................TTCTTTTTTTTTTCGGTTG...................................................................................................................................191.000.001.00---------------------------------------------------------
......................................................................................TTTTAACTTTCTTTTTCTTTTTCG............................................................................................................................................241.000.00-1.00--------------------------------------------------------
.............ATTCTTGGAGCACTGAAGG..........................................................................................................................................................................................................................1911.001.00-----------------------------------------------1.00----------
.............................................................................................TTTCTTTTTCTTTTTTTTTTCGCTTT...................................................................................................................................261.000.001.00---------------------------------------------------------
........GCAGCATTCTTGGAGCACTGAAG...........................................................................................................................................................................................................................2311.001.00------------------------------------1.00---------------------
......................................................................................TTTTAACTTTCTTTTTCTTTTTTTTTCT........................................................................................................................................281.000.00--1.00-------------------------------------------------------
......................................................................................TTTTAACTTTCTTTTTCTTTATTT............................................................................................................................................241.000.00------1.00---------------------------------------------------
.GTATTGGGCAGCATTCTTGGAGCACTGAAGGCCA.......................................................................................................................................................................................................................3411.001.00---------1.00------------------------------------------------
...............................................................................................TCTTTTTCTTTTTTTTTTCGTCGTG..................................................................................................................................251.000.001.00---------------------------------------------------------
.................TTGGAGCACTGAAGGCCATTGTAAATGTCA...........................................................................................................................................................................................................3011.001.00-----------------------------------------------------1.00----
...........................................................................................ACTTTCTTTTTCTTTTTTCG...........................................................................................................................................201.000.00-1.00--------------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTATG........................................................................................................................................231.000.00-1.00--------------------------------------------------------
......................................................................................TTTTAACTTTCTTTTTCTTTTTTTTCT.........................................................................................................................................271.000.00-----1.00----------------------------------------------------
..............................................................................................................................................................TTTAAAAGCACTTCAAGATTGTAGTTAAG...............................................................2911.001.00----------------1.00-----------------------------------------
............CATTCTTGGAGCACTGAAGGCCATTGT...................................................................................................................................................................................................................2711.001.00--------------------1.00-------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTTGGAG.....................................................................................................................................261.000.001.00---------------------------------------------------------
..................TGGAGCACTGAAGGCCATTGTAAACGT.............................................................................................................................................................................................................271.000.00----1.00-----------------------------------------------------
.................................................................................................................................................................AAAAGCACTTCAAGATTGTAGTTAAG...............................................................2611.001.00-----------------------------------------1.00----------------
............CATTCTTGGAGCACTGAAGGCCATT.....................................................................................................................................................................................................................2511.001.00---------------------------------------1.00------------------
........................................................................................TTAACTTTCTTTTTCTTTTTTTTTTCG.......................................................................................................................................2711.001.00-1.00--------------------------------------------------------
............................................................................................CTTTCTTTTTCTTTTTTTTCTAG.......................................................................................................................................231.000.00-----1.00----------------------------------------------------
.....................................................................................................................................................................GCACTTCAAGATTGTAGTTAAGTCGGGGGATG.....................................................3211.001.00---------------------------------1.00------------------------
..........................TGAAGGCCATTGTAAATGTC............................................................................................................................................................................................................2011.001.00--------------------------------------1.00-------------------
.......GGCAGCATTCTTGGAGCACTGA.............................................................................................................................................................................................................................2211.001.00-----------------------1.00----------------------------------
.............................................................................................TTTCTTTTTCTTTTTTTTTTCGGCCC...................................................................................................................................261.000.001.00---------------------------------------------------------
...................................................................................................TTTCTTTTTTTTTTCGTTTAT..................................................................................................................................211.000.001.00---------------------------------------------------------
...............................................................................................TCTTTTTCTTTTTTTTTTCGCAG....................................................................................................................................231.000.001.00---------------------------------------------------------
.....TGGGCAGCATTCTTGGAGCACTGAAGGCC........................................................................................................................................................................................................................2911.001.00---------1.00------------------------------------------------
..........................................................................................................................................TGGGAGGTTTTTGTTAACT.............................................................................................191.000.00----------------------------------1.00-----------------------
.............ATTCTTGGAGCACTGAAGGCCACTG....................................................................................................................................................................................................................251.000.00----1.00-----------------------------------------------------
........................................................................................TTAACTTTCTTTTTCTTTCAG.............................................................................................................................................211.000.00---1.00------------------------------------------------------
..............TTCTTGGAGCACTGAAGGC.........................................................................................................................................................................................................................1911.001.00-----------------1.00----------------------------------------
.............................................................................................TTTCTTTTTCTTTTTTTTTTCGTCGTG..................................................................................................................................271.000.001.00---------------------------------------------------------
..........................................................................................AACTTTCTTTTTCTTTTTAAG...........................................................................................................................................211.000.00---1.00------------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTAG........................................................................................................................................231.000.00--1.00-------------------------------------------------------
............................................................................................CTTTCTTTTTCTTTTTTTTTTCCAT.....................................................................................................................................251.000.00--1.00-------------------------------------------------------
............................................................................................CTTTCTTTTTCTTTTTTTTTTCATG.....................................................................................................................................251.000.00--1.00-------------------------------------------------------
..........................................................................................AACTTTCTTTTTCTTTTTTTTTTGG.......................................................................................................................................251.000.001.00---------------------------------------------------------
...............TCTTGGAGCACTGAAGGCCA.......................................................................................................................................................................................................................2011.001.00-------------------------------1.00--------------------------
...ATTGGGCAGCATTCTTGGAGCACTGAAGG..........................................................................................................................................................................................................................2911.001.00----------------------1.00-----------------------------------
..................................................GTATGGAATTTGCTGGAA......................................................................................................................................................................................181.000.00---------------------------1.00------------------------------
............................................................................................................................................................................AAGATTGTAGTTAAGTCGGGGGATG.....................................................2511.001.00--------1.00-------------------------------------------------
.............................................................................................TTTCTTTTTCTTTTTTTTTTCATC.....................................................................................................................................241.000.00---1.00------------------------------------------------------
............................................................................................CTTTCTTTTTCTTTTTTTTTTAGC......................................................................................................................................241.000.00----1.00-----------------------------------------------------
..............TTCTTGGAGCACTGAAGGCCATT.....................................................................................................................................................................................................................2311.001.00---------------1.00------------------------------------------
...............TCTTGGAGCACTGAAGGCCATTG....................................................................................................................................................................................................................2311.001.00----------------------------------------------------1.00-----
.............................AGGCCATTGTAAATGTCATCG........................................................................................................................................................................................................211.000.00-------1.00--------------------------------------------------
..TATTGGGCAGCATTCTTGGAGCACTGAAGGCCA.......................................................................................................................................................................................................................3311.001.00---------1.00------------------------------------------------
...........................................................................................................................ATCTTATTTAGGAGTTGGGAGGTTTTC....................................................................................................271.000.00----1.00-----------------------------------------------------
......GGGCAGCATTCTTGGAGCA.................................................................................................................................................................................................................................1911.001.00-------------------------------------------------------1.00--
...........................................................................................ACTTTCTTTTTCTTTTTTTTCTG........................................................................................................................................231.000.00-1.00--------------------------------------------------------
............................................................................................CTTTCTTTTTCTTTTTTTTTTCTAT.....................................................................................................................................251.000.00--1.00-------------------------------------------------------
..................................................................................................TTTTCTTTTTTTTTTCGCAG....................................................................................................................................201.000.001.00---------------------------------------------------------
.........................................................................................TAACTTTCTTTTTCTTTTTTTTAATG.......................................................................................................................................261.000.00-----1.00----------------------------------------------------
......................................................................................TTTTAACTTTCTTTTTCTTTCG..............................................................................................................................................221.000.00------1.00---------------------------------------------------
...................................................................................................TTTCTTTTTTTTTTCGGCC....................................................................................................................................191.000.001.00---------------------------------------------------------
..............................................................................................TTCTTTTTCTTTTTTTTTTCGGTG....................................................................................................................................241.000.001.00---------------------------------------------------------
..........................................................................................................................................TGGGAGGTTTTTGTTAGCTCTTT.........................................................................................231.000.00----1.00-----------------------------------------------------
............................................................................................CTTTCTTTTTCTTTTTTTTCG.........................................................................................................................................211.000.00-1.00--------------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTTCCCGC....................................................................................................................................271.000.001.00---------------------------------------------------------
.......................................................................................TTTAACTTTCTTTTTCTTTTTTTTCG.........................................................................................................................................261.000.00-1.00--------------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTATAA......................................................................................................................................251.000.001.00---------------------------------------------------------
............................................................................................CTTTCTTTTTCTTTTTTTTTTCTGAG....................................................................................................................................261.000.001.00---------------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTGGT.......................................................................................................................................241.000.001.00---------------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTCGAG.......................................................................................................................................241.000.001.00---------------------------------------------------------
............................................................................................................................................................................AAGATTGTAGTTAAGTCGGGGGATGTCA..................................................2811.001.00------------------1.00---------------------------------------
........................................................................AAGACTTTTTCTTGTCTGA...............................................................................................................................................................191.000.00--------1.00-------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTATTG......................................................................................................................................251.000.00-----1.00----------------------------------------------------
...ATTGGGCAGCATTCTTGGAGCA.................................................................................................................................................................................................................................2211.001.00------------------------------------------1.00---------------
..........................................................................................AACTTTCTTTTTCTTTTAAG............................................................................................................................................201.000.00-1.00--------------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTTCTG......................................................................................................................................251.000.00-1.00--------------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTAGAC........................................................................................................................................231.000.001.00---------------------------------------------------------
......GGGCAGCATTCTTGGAGCACTGAAGGCCATT.....................................................................................................................................................................................................................3111.001.00---------1.00------------------------------------------------
..............................................................................................TTCTTTTTCTTTTTTTTTTCGGC.....................................................................................................................................231.000.001.00---------------------------------------------------------
......................................................................................TTTTAACTTTCTTTTTCTTTTTTTTATCG.......................................................................................................................................291.000.00-1.00--------------------------------------------------------
..............................................................................................TTCTTTTTCTTTTTTTTTTCAAAG....................................................................................................................................241.000.00---1.00------------------------------------------------------
........GCAGCATTCTTGGAGCACTGAAGGCCA.......................................................................................................................................................................................................................2711.001.00--------------------------------------------------1.00-------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTCTTG......................................................................................................................................251.000.00--1.00-------------------------------------------------------
.................................................................................................................................TTTAGGAGTTGGGAGGTTTTTGTTAGCTT............................................................................................2911.001.00----1.00-----------------------------------------------------
............CATTCTTGGAGCACTGAAGGCCACTGA...................................................................................................................................................................................................................271.000.00---------------------------------------------1.00------------
.................................................................................................TTTTTCTTTTTTTTTTCGTCATG..................................................................................................................................231.000.001.00---------------------------------------------------------
.........................................................................................TAACTTTCTTTTTCTTTTTTTTTTC........................................................................................................................................2511.001.00--1.00-------------------------------------------------------
....................................................................................................TTCTTTTTTTTTTCGTAGTGG.................................................................................................................................211.000.001.00---------------------------------------------------------
............................................................................................CTTTCTTTTTCTTTTTTTTTTCCAC.....................................................................................................................................251.000.00-1.00--------------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTAAG.......................................................................................................................................241.000.00-----1.00----------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTCCTG.........................................................................................................................................221.000.00-1.00--------------------------------------------------------
..........................................................................................AACTTTCTTTTTCTTTTTTTTTTC........................................................................................................................................2411.001.00------1.00---------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTGGG.......................................................................................................................................241.000.00----1.00-----------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTTCTAG.....................................................................................................................................261.000.00---1.00------------------------------------------------------
.GTATTGGGCAGCATTCTT.......................................................................................................................................................................................................................................1811.001.00----------------1.00-----------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTAG..........................................................................................................................................211.000.00-1.00--------------------------------------------------------
.............ATTCTTGGAGCACTGAAG...........................................................................................................................................................................................................................1811.001.00-------------------1.00--------------------------------------
...........GCATTCTTGGAGCACTGAAGGC.........................................................................................................................................................................................................................2211.001.00-------------1.00--------------------------------------------
................CTTGGAGCACTGAAGGCCATTG....................................................................................................................................................................................................................2211.001.00------------------------------------------------------1.00---
...........................................................................................ACTTTCTTTTTCTTTTTTTTTTGTG......................................................................................................................................251.000.00--1.00-------------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTTCTTTG....................................................................................................................................271.000.00--1.00-------------------------------------------------------
........................................................................AAGACTTTTTCTTGTGTGA...............................................................................................................................................................191.000.00--------1.00-------------------------------------------------
............CATTCTTGGAGCACTGAAGG..........................................................................................................................................................................................................................2011.001.00---------------1.00------------------------------------------
....................................................................................TGTTTTAACTTTCTTTTTGTTC................................................................................................................................................221.000.00--------------------------1.00-------------------------------
........................................................................................TTAACTTTCTTTTTCTTTTTTTGAG.........................................................................................................................................251.000.00----1.00-----------------------------------------------------
........GCAGCATTCTTGGAGCACTGAAGG..........................................................................................................................................................................................................................2411.001.00---------------------------------------------------1.00------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTTCAAG.....................................................................................................................................261.000.001.00---------------------------------------------------------
...............................................................................................TCTTTTTCTTTTTTTTTTCGGCC....................................................................................................................................231.000.00----1.00-----------------------------------------------------
.....................................GTAAATGTCATAGGTATGGAATTT.............................................................................................................................................................................................2411.001.00-----------------------------------1.00----------------------
..................TGGAGCACTGAAGGCCATTGCA..................................................................................................................................................................................................................221.000.00----1.00-----------------------------------------------------
.................................................................................................................................................................................TGTAGTTAAGTCGGGGGATGTCA..................................................2311.001.00-------------------------------------1.00--------------------
..............................................................................................TTCTTTTTCTTTTTTTTTTCGTGGAG..................................................................................................................................261.000.00----1.00-----------------------------------------------------
..............TTCTTGGAGCACTGAAGGCCATTGTA..................................................................................................................................................................................................................2611.001.00--------1.00-------------------------------------------------
............................................................................................CTTTCTTTTTCTTTTTTTTTTCCTC.....................................................................................................................................251.000.001.00---------------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTGTC.......................................................................................................................................241.000.001.00---------------------------------------------------------
..............................................................................................TTCTTTTTCTTTTTTTTTTCGGCC....................................................................................................................................241.000.001.00---------------------------------------------------------
....TTGGGCAGCATTCTTGGAGCACTGAAGGC.........................................................................................................................................................................................................................2911.001.00---------1.00------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTTACC......................................................................................................................................251.000.001.00---------------------------------------------------------
.................................................................................................TTTTTCTTTTTTTTTTCGTCGGG..................................................................................................................................231.000.001.00---------------------------------------------------------
....TTGGGCAGCATTCTTGGAGT..................................................................................................................................................................................................................................201.000.00-------------1.00--------------------------------------------
...............TCTTGGAGCACTGAAG...........................................................................................................................................................................................................................1620.500.50--------------------------------------------------------0.50-
...........................................................................................ACTTTCTTTTTCTTTTTTTTTTCGAG.....................................................................................................................................2620.500.50------0.50---------------------------------------------------
...............................................................................................................................................................................ATTGTAGTTAAGTCG............................................................1520.500.50---------------------------------------------------------0.50
.......GGCAGCATTCTTGGAGCA.................................................................................................................................................................................................................................1820.500.50------0.50---------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTTCG.......................................................................................................................................2420.500.50-0.50--------------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTTCGCAAG...................................................................................................................................2820.500.500.50---------------------------------------------------------
...........................................................................................ACTTTCTTTTTCTTTTTTTTTTCGGTC....................................................................................................................................2720.500.500.50---------------------------------------------------------
........................................................................................TTAACTTTCTTTTTCTTTTTTTTTT.........................................................................................................................................2530.330.33------0.33---------------------------------------------------
.................................................................................................TTTTTCTTTTTTTTTTCGTA.....................................................................................................................................2040.250.250.25---------------------------------------------------------
.........................................................................................TAACTTTCTTTTTCTTTTTTTTTT.........................................................................................................................................2460.170.17------0.17---------------------------------------------------
.........................................................................................TAACTTTCTTTTTCTTTTTTTTTTTTTG.....................................................................................................................................2860.170.17-0.17--------------------------------------------------------
.........................................................................................TAACTTTCTTTTTCTTTTTTTTTTTAAG.....................................................................................................................................2860.170.17---0.17------------------------------------------------------

Antisense strand
AGTATTGGGCAGCATTCTTGGAGCACTGAAGGCCATTGTAAATGTCATAGGTATGGAATTTGCTGGTTACATAAGACTTTTTCTTGTTTTAACTTTCTTTTTCTTTTTTTTTTCGTAAGTAAAATCTTATTTAGGAGTTGGGAGGTTTTTGTTAGCTTTTTAAAAGCACTTCAAGATTGTAGTTAAGTCGGGGGATGTCACAAAAGTCTTGTTTCCCAAAACCCATTTATATTTTACTTTAAAGAGAAAA
......................................................((((......(((((.((((((.....))))))..)))))......))))..................................................................................................................................................
..................................................51....................................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029127(GSM416756)
A549. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR040039(GSM532924)
G531T. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR343335SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR040015(GSM532900)
G623T. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................GCCATTGTAAATGTCATAGCC...................................................................................................................................................................................................... 211.000.00----------------------------1.00-----------------------------
.................................................................................................................................................................................................................TGTTTCCCAAAACCCATTTTGAC.................. 231.000.00------------------------------1.00---------------------------
........................................................................................TTAACTTTCTTTTTCTTTTTTTTGAAG....................................................................................................................................... 271.000.00--------------------------------1.00-------------------------
.....................................................................................GTTTTAACTTTCTTTTTGC.................................................................................................................................................. 191.000.00----------------------------------------1.00-----------------
...................................................................................................................................................................................................................TTTCCCAAAACCCATTAAG.................... 191.000.00-------------------------------------------------1.00--------
...............................................................................................TCTTTTTCTTTTTTTTTTCCGG..................................................................................................................................... 221.000.00-------------------------1.00--------------------------------
.......................................................................................................TTTTTTTTTTCGTAAGTAAAAAAA........................................................................................................................... 241.000.00---------------------1.00------------------------------------
...............................................CAAATTCCATACCTA............................................................................................................................................................................................ 1580.120.12------0.12---------------------------------------------------