ID: uc002utw.2_intron_12_0_chr2_197738483_r.5p
GENE: (14)
chr2:197740270-197740519-


(6)
BREAST
(9)
CELL-LINE
(2)
CERVIX
(9)
HEART
(2)
HELA
(1)
KIDNEY
(3)
LIVER
(2)
OTHER
(1)
RRP40.ip
(27)
SKIN
(1)
TESTES
(2)
UTERUS
(1)
XRN.ip

Sense strand
AAAAGAGAAAAGATACATACAGCTTCCTGTAACTCATCTTTTTTCCTTTGGTAAGTACTTTGTTTTTGGAAAGCATAAGAATTGCTTTTATTTTTAACAGAGTTGCAGTAAAGCAGAGCTTTGTAATATCAAATGTTGAATATTTCAAGTATAGTTCTTAGAATAACTATATGATGTGGTTCAGTGGTTTTATTCTCATTGGGCTAGCAGTCATATTCTGAGAAGTGAACTTCCATAATCACATACATTT
...............................................................................................................................................................(((((((((((.(((......))))))))..))))))......................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189784TAX577742(Rovira)
total RNA. (breast)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR189782SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553575(SRX182781)
source: Kidney. (Kidney)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040038(GSM532923)
G531N. (cervix)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM532879(GSM532879)
G659N. (cervix)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................................................................................ATGTGGTTCAGTGGTAGAA..........................................................19530.000.00116.0080.0073.0048.0044.0040.0024.0019.0017.0015.00---3.004.002.004.00-4.00-1.002.00-3.003.003.003.001.00-1.001.00-1.001.002.002.001.001.00----1.001.001.001.00---1.001.00-1.00------1.00-1.00-1.00-1.00
.............................................................................................................................................................................ATGTGGTTCAGTGGTAGA...........................................................1833.000.002.00------2.00---3.006.001.00-2.00----2.001.003.00----1.002.001.00-2.001.00-----1.00--1.00-----1.00----------1.00-------
.............................................................................................................................................................................ATGTGGTTCAGTGGTAG............................................................179.000.00-------------------3.00-------------1.00-----1.001.00-----1.00-------------1.00-1.00---
............................................................................................................................................................................GATGTGGTTCAGTGGTAGAA..........................................................208.000.001.001.00--1.00-1.00--1.00----1.00---------------1.00-----------------------1.00-----------
..........................................................................................................................................................................................................................TGAGAAGTGAACTTCATAG.............193.000.00----------3.00-------------------------------------------------------
.....................................................................................................................................................................................CAGTGGTTTTATTCTATG...................................................182.000.00-----------------2.00------------------------------------------------
.................................................................................................................................................CAAGTATAGTTCTTAGAATAACT..................................................................................2312.002.00---2.00--------------------------------------------------------------
...............................................................................................................AGCAGAGCTTTGTAATATC........................................................................................................................1911.001.00-----------------------------------------------------1.00------------
...........................................................................................................................................................................TGATGTGGTTCAGTGGTA.............................................................181.000.00-------------1.00----------------------------------------------------
............................................................................................................................................................................GATGTGGTTCAGTGGTAG............................................................181.000.00-------------1.00----------------------------------------------------
..........................................................................................................................................................................................................................TGAGAAGTGAACTTCTGAG.............191.000.00----------1.00-------------------------------------------------------
...........................................................................................................................................................................TGATGTGGTTCAGTGTC..............................................................171.000.00-----------1.00------------------------------------------------------
....................................................................................CTTTTATTTTTAACAGAGTTGCAG..............................................................................................................................................2411.001.00-------------------------------------------------------1.00----------
.....................................................................................................................................................................................CAGTGGTTTTATTCTATA...................................................181.000.00-----------------1.00------------------------------------------------
..........................................................................................................................................................................................................................TGAGAAGTGAACTTCAGAG.............191.000.00----------1.00-------------------------------------------------------
...........................................................................................................................................................................TGATGTGGTTCAGTGGTAT............................................................191.000.00-----------1.00------------------------------------------------------
........................................................................................................................................................................................................................TCTGAGAAGTGAACTCTG................181.000.00-----1.00------------------------------------------------------------
.....................................................................................................................................................................................CAGTGGTTTTATTCTACG...................................................181.000.00-----------------1.00------------------------------------------------
.............................................................................................................................................................................ATGTGGTTCAGTGGTTGA...........................................................181.000.00-1.00----------------------------------------------------------------
...........................................................................................................................................................................TGATGTGGTTCAGTGGTAGA...........................................................201.000.00-----------1.00------------------------------------------------------
..................................................GTAAGTACTTTGTTTTTGGAAAGCATAAGA..........................................................................................................................................................................3011.001.00--------------------------------------------------------1.00---------
..............................AACTCATCTTTTTTCG............................................................................................................................................................................................................161.000.00----------------------------------------------------------------1.00-
..........................................................................................................................................................................................................................TGAGAAGTGAACTTCTTAG.............191.000.00----------1.00-------------------------------------------------------
..........................................................................................................................................................................................GTTTTATTCTCATTGGGCTAGCAGTCAT....................................2811.001.00---------------------------------------------------------1.00--------
.............................................................................................................................................................................ATGTGGTTCAGTGGTA.............................................................161.000.00---------------------------------------------------1.00--------------
...................................ATCTTTTTTCCTTTGGTTAC...................................................................................................................................................................................................201.000.00------------------------------------------------1.00-----------------

Antisense strand
AAAAGAGAAAAGATACATACAGCTTCCTGTAACTCATCTTTTTTCCTTTGGTAAGTACTTTGTTTTTGGAAAGCATAAGAATTGCTTTTATTTTTAACAGAGTTGCAGTAAAGCAGAGCTTTGTAATATCAAATGTTGAATATTTCAAGTATAGTTCTTAGAATAACTATATGATGTGGTTCAGTGGTTTTATTCTCATTGGGCTAGCAGTCATATTCTGAGAAGTGAACTTCCATAATCACATACATTT
...............................................................................................................................................................(((((((((((.(((......))))))))..))))))......................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR553576(SRX182782)
source: Testis. (testes)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189784TAX577742(Rovira)
total RNA. (breast)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
SRR189782SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037936(GSM510474)
293cand1. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553575(SRX182781)
source: Kidney. (Kidney)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040038(GSM532923)
G531N. (cervix)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029132(GSM416761)
MB-MDA231. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM532879(GSM532879)
G659N. (cervix)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577453(Rovira)
total RNA. (breast)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
........................................................................................................................................................AGTTCTTAGAATAACCTG................................................................................ 181.000.00-1.00----------------------------------------------------------------