ID: uc002utl.1_intron_13_0_chr2_197138848_r.5p
GENE: HECW2(13)
chr2:197143052-197143301-


(1)
BRAIN
(1)
BREAST
(9)
CELL-LINE
(3)
HEART
(1)
HELA
(2)
LIVER
(1)
OTHER
(1)
SKIN

Sense strand
TGGTTCATCGGCAACACCTGACAAGGCAACGCAGCCACAGTGCGGGTGAGGTGAGTCATGCGTTTTGGGGACTGACCTGTTGGTTGATAGAAGCTTCTAGTATGTGATGGTTTGAGGAATTTGACTGATTTTTTTAAAGCATTTTTTCTTTTTTTTTTTTTTGAGTTTGATTTAGAGGCTGAAAAGCTTTCGAATGTTGACAGGGCTTCTCTGGAAATACATACAGCCTAAATCACAAATTTAAAAAGGT
........................................................(((((.....((((.((...(((((....))))).))))))..))))).((((.(((((((((.((....)).))))))))).))))...........................................................................................................
..................................................51.................................................................................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR029128(GSM416757)
H520. (cell line)
...........................................................................................................................................CATTTTTTCTTTTTTTTTTTTTTCAAG....................................................................................2715.000.00-8.00-5.001.001.00--------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTTTTCAAG.....................................................................................268.000.00-6.00-1.00-1.00--------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTCAAG........................................................................................236.000.00-3.00-2.001.00---------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTTCAAG.......................................................................................245.000.00-1.00-3.001.00---------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTTTCAAG......................................................................................255.000.00-5.00------------------
...........................................................................................................................................CATTTTTTCTTTTTTTTCAAG..........................................................................................213.000.00-1.00---2.00--------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTAGG.........................................................................................223.000.002.00--1.00----------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTTTGAGGTAG.................................................................................293.000.002.00-1.00-----------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTTTGAGTTGGAG...............................................................................312.000.00--2.00-----------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTTCCG......................................................................................242.000.001.00---1.00---------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTGGAC......................................................................................242.000.001.00-1.00-----------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTTTATG.....................................................................................252.000.00-1.00--1.00---------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTTTTTCAAT....................................................................................272.000.00---2.00----------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTTCGAG.....................................................................................252.000.002.00-------------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTTTACTG....................................................................................262.000.001.00--1.00----------------
.........................................................................................................................................AGCATTTTTTCTTTTTTTTTTTTTTTTGC....................................................................................292.000.002.00-------------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTGCT.......................................................................................232.000.00--2.00-----------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTGCTC......................................................................................241.000.00--1.00-----------------
.........................................................................................................................................AGCATTTTTTCTTTTTTTTTTTTTTGAGACGG.................................................................................3211.001.001.00-------------------
........................................................CATGCGTTTTGGGGACTGACC.............................................................................................................................................................................2111.001.00-----------------1.00--
........................................TGCGGGTGAGGTGAGTGTAT..............................................................................................................................................................................................201.000.00----------1.00---------
.........................................................................................................................................AGCATTTTTTCTTTTTTTTTTTTTTTAA.....................................................................................281.000.00--1.00-----------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTTTTCTAG.....................................................................................261.000.00---1.00----------------
.................................................................................................................................................TTCTTTTTTTTTTTTTTGAGTAGAA................................................................................251.000.00--1.00-----------------
.........................................................................................................................................AGCATTTTTTCTTTTTTTTTTTTTTTGT.....................................................................................281.000.001.00-------------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTTTGAAGAG..................................................................................281.000.00--1.00-----------------
..................................................................................................................................................TCTTTTTTTTTTTTTTGAGTTTTGG...............................................................................251.000.001.00-------------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTGGC........................................................................................221.000.001.00-------------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTTCTTG.......................................................................................241.000.00-----1.00--------------
...............................................................................................................................................TTTTCTTTTTTTTTTTTTTGAGTCCGG................................................................................271.000.001.00-------------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTTTGAGTCGG.................................................................................291.000.001.00-------------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTTTGTGG....................................................................................261.000.00--1.00-----------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTGGTC.......................................................................................231.000.00--1.00-----------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTAT..........................................................................................211.000.00-----1.00--------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTATGG........................................................................................231.000.00-1.00------------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTGGTC......................................................................................241.000.00--1.00-----------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTAAAG........................................................................................231.000.00----1.00---------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTCAAT........................................................................................231.000.00---1.00----------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTCAT.........................................................................................221.000.00-1.00------------------
.................................................................................................................................................TTCTTTTTTTTTTTTTTGAGTTTGGC...............................................................................261.000.00--1.00-----------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTTTGCGTT...................................................................................271.000.00--1.00-----------------
.........................................................................................................................................AGCATTTTTTCTTTTTTTTTTGAG.........................................................................................241.000.001.00-------------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTTTGAGTTG..................................................................................281.000.001.00-------------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTCG..........................................................................................211.000.00---1.00----------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTGCG........................................................................................221.000.001.00-------------------
.......................AGGCAACGCAGCCACAGTGC...............................................................................................................................................................................................................2011.001.00------------1.00-------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTTTAGGG....................................................................................261.000.00--1.00-----------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTGGCA.......................................................................................231.000.00--1.00-----------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTTACAG.......................................................................................241.000.00-1.00------------------
.........................................................................................................................................AGCATTTTTTCTTTTTTTTTTCGAG........................................................................................251.000.001.00-------------------
........................................................................................................................................AAGCATTTTTTCTTTTTTTTTTTTTGG.......................................................................................271.000.00--1.00-----------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTTTTTAT......................................................................................251.000.00-----1.00--------------
.........................................................................................................................................AGCATTTTTTCTTTTTTTTTTTTTTTGAG....................................................................................291.000.001.00-------------------
.........................................................................................................................................AGCATTTTTTCTTTTTTTTTTTTTTCAG.....................................................................................281.000.001.00-------------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTCGGC........................................................................................221.000.00--1.00-----------------
.GGTTCATCGGCAACACCTGACAAGGCA..............................................................................................................................................................................................................................2711.001.00----------------1.00---
.........................................................................................................................................AGCATTTTTTCTTTTTTTTTTTTTTGAG.....................................................................................2811.001.00--1.00-----------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTTATG........................................................................................231.000.00-1.00------------------
......................................................................................................................................................TTTTTTTTTTTTGAGTTTAACT..............................................................................221.000.00-------1.00------------
.....CATCGGCAACACCTGACAAGG................................................................................................................................................................................................................................2111.001.00-----------1.00--------
................................................................................................................................................TTTCTTTTTTTTTTTTTTGAGTTTCGG...............................................................................271.000.001.00-------------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTCTAG........................................................................................231.000.00-1.00------------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTTTGTG.......................................................................................241.000.00----1.00---------------
...............................................................................................................................................TTTTCTTTTTTTTTTTTTTGAGTTCGAG...............................................................................281.000.00--1.00-----------------
.........................................................................................................................................AGCATTTTTTCTTTTTTTTTTTTGAG.......................................................................................261.000.00--1.00-----------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTTTCTAT......................................................................................251.000.00---1.00----------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTCCGT........................................................................................221.000.001.00-------------------
.........................................................................................................................................AGCATTTTTTCTTTTTTTTTTTTTTTG......................................................................................271.000.001.00-------------------
.............................................................................................................................................TTTTTTCTTTTTTTTTTTTTTGAGTTGTTG...............................................................................301.000.001.00-------------------
..............................................................................GTTGGTTGATAGAAGGCAG.........................................................................................................................................................191.000.00---------------1.00----
.................................................................................................................................................TTCTTTTTTTTTTTTTTGAGTTTTGCC..............................................................................271.000.001.00-------------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTGATG........................................................................................221.000.001.00-------------------
........................................................................................................................................AAGCATTTTTTCTTTTTTTTTTTTTTGAGACGG.................................................................................331.000.00--1.00-----------------
.............................................................................................................................................TTTTTTCTTTTTTTTTTTTTTGAGTTTTGC...............................................................................301.000.001.00-------------------
.........................................................................................................................................AGCATTTTTTCTTTTTTTTTTTTTC........................................................................................251.000.001.00-------------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTTTTTGTTG....................................................................................271.000.001.00-------------------
.................................................................................................................................................TTCTTTTTTTTTTTTTTGAGTTTCTC...............................................................................261.000.001.00-------------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTTCCAG.....................................................................................251.000.00----1.00---------------
.........................................................................................................................................AGCATTTTTTCTTTTTTTTTTGG..........................................................................................231.000.00--1.00-----------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTTCAAT.......................................................................................241.000.00---1.00----------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTTTTTATG.....................................................................................261.000.00-1.00------------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTGGGC......................................................................................241.000.001.00-------------------
...........................................................................................................................................CATTTTTTCTTTTTTTTTTAATG........................................................................................231.000.00-1.00------------------
............................................................................................................................................ATTTTTTCTTTTTTTTTTTTGCCC......................................................................................241.000.00--1.00-----------------
..................................................................................................................................................TCTTTTTTTTTTTTTTGAGTTTG.................................................................................2320.500.50-------0.50------------

Antisense strand
TGGTTCATCGGCAACACCTGACAAGGCAACGCAGCCACAGTGCGGGTGAGGTGAGTCATGCGTTTTGGGGACTGACCTGTTGGTTGATAGAAGCTTCTAGTATGTGATGGTTTGAGGAATTTGACTGATTTTTTTAAAGCATTTTTTCTTTTTTTTTTTTTTGAGTTTGATTTAGAGGCTGAAAAGCTTTCGAATGTTGACAGGGCTTCTCTGGAAATACATACAGCCTAAATCACAAATTTAAAAAGGT
........................................................(((((.....((((.((...(((((....))))).))))))..))))).((((.(((((((((.((....)).))))))))).))))...........................................................................................................
..................................................51.................................................................................................................166..................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR029128(GSM416757)
H520. (cell line)
........................................................................................................................TTGACTGATTTTTTTCTCT............................................................................................................... 192.000.00------2.00-------------
.........................................................................................................................................................TTTTTTTTTGAGTTTGTA............................................................................... 181.000.00--------------1.00-----
..............................................................................................................................................................................GAGGCTGAAAAGCTTATGC......................................................... 191.000.00--------1.00-----------
........................................................................................................................................................TTTTTTTTTTGAGTTCATA............................................................................... 191.000.00---------1.00----------
...........................................................................................................................................................................................TTTCGAATGTTGACATCAG............................................ 191.000.00-------------1.00------
...............GTTGCCTTGTCAGGT............................................................................................................................................................................................................................ 1540.250.25------------------0.25-
.....................................................................................................................................................ATCAAACTCAAAAAAAAAAAAA............................................................................... 2250.200.20-------------------0.20