ID: uc002ura.1_intron_0_0_chr2_190612058_r.3p
GENE: OSGEPL1(8)
chr2:190612008-190612257-


(1)
B-CELL
(8)
CELL-LINE
(1)
LIVER
(2)
OTHER
(1)
XRN.ip

Sense strand
ATAAATATGGAGAATGAGCAACACTGTTAGCCACAAAAGCCATACTCATGTACTTGATGGGCAATGATTTCAGATTTTATTTTTAAATAAAACTTTTTTTCCCTTTTAAAAAATTTTTGTTTTATTTTCTTTTTTAATTTTTCTTTTCTGCTTCATCCACTGACTCTCAGACTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTCACTCTCTGACCTCAGCTGGAGTACAGTAGCCAGATCACAACTCA
...............................................................................................................................................................(((..(((((((...................))))))))))..................................................
.......................................................................................................................120.............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189782SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCTTG......................................................2815.000.0012.003.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGGG......................................................2815.000.0014.001.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCTTG.....................................................2913.000.0011.002.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGCTG.....................................................2912.000.009.003.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCGAG.....................................................2910.000.009.001.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCGAG.......................................................2710.000.007.003.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCGAG......................................................289.000.008.001.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCGG........................................................265.000.005.00-----------
.......................................................................................................................TTTTATTTTCTTTTTTAATTTTTCTTTTCTG....................................................................................................3114.004.00---2.001.001.00------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCGC.......................................................274.000.004.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCTGG......................................................284.000.003.001.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCGG.........................................................253.000.003.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCG.........................................................253.000.003.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCTTT.....................................................293.000.001.002.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCCGG......................................................283.000.002.001.00----------
.......................................................................................................................TTTTATTTTCTTTTTTAATTTTTCTTCTG......................................................................................................293.000.00---2.00-1.00------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGGGG.....................................................293.000.002.001.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGTAG.....................................................293.000.002.001.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCTAG......................................................282.000.001.001.00----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTAGG..............................................................222.000.001.001.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCAC.........................................................252.000.002.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCGGG.......................................................272.000.002.00-----------
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGTCGA............................................272.000.00--------2.00---
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCAAG.......................................................272.000.002.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCGGG.....................................................292.000.002.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCAC........................................................262.000.002.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCTT......................................................282.000.002.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCTGC......................................................282.000.002.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCTGC.....................................................292.000.00-2.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCAGG......................................................282.000.001.001.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCCC........................................................262.000.002.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCGCC.....................................................292.000.00-2.00----------
................................................................................................................................................................TGACTCTCAGACTTTTTTTTCGAG..................................................................242.000.002.00-----------
................................................................................................................................................................................................TGAGACAGGGTCTCACTCTCTGCCC.................................252.000.001.001.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCCGC........................................................262.000.001.001.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTATG..........................................................242.000.001.001.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCCC.......................................................272.000.001.001.00----------
.........................................................TGGGCAATGATTTCAGATTTTATTTTTAAACAA................................................................................................................................................................332.000.00-2.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCGGG......................................................282.000.001.001.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCTGG.......................................................272.000.002.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCTTT......................................................282.000.001.001.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCAG......................................................282.000.002.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCGAC.....................................................291.000.00-1.00----------
...........................................................................................................................ATTTTCTTTTTTAATTTTTCTTTTCTG....................................................................................................2711.001.00------1.00-----
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCAGG.......................................................271.000.00-1.00----------
............................................................................................................................TTTTCTTTTTTAATTTTTCCCC........................................................................................................221.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCTCT........................................................261.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCGGC........................................................261.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTCTAG............................................................241.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTACTC.......................................................271.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGGGAC....................................................301.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCCGC......................................................281.000.001.00-----------
...............................................................................................................................TCTTTTTTAATTTTTCTTTTATTT...................................................................................................241.000.00--1.00---------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTAAAG.........................................................271.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTCCGG......................................................301.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTCC..........................................................261.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTGTA.............................................................231.000.00-1.00----------
...AATATGGAGAATGAGCAACACTT................................................................................................................................................................................................................................231.000.00-----------1.00
.......................................................................................................................................................................CAGACTTTTTTTTTTTTTGCAG.............................................................221.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCCTC......................................................281.000.001.00-----------
...........................................................................................ACTTTTTTTCCCTTTTAACTT..........................................................................................................................................211.000.00--1.00---------
........................................................................................................................TTTATTTTCTTTTTTAATTCTG............................................................................................................221.000.00---1.00--------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCTGC........................................................261.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCGG.......................................................271.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGTG......................................................281.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGGGAG....................................................301.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCTCC........................................................261.000.001.00-----------
.......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTCCT...........................................................241.000.001.00-----------
................................................................................................................................................................................TTTTTTTTTTTTTTTTTGAGACAGGGCTAT............................................301.000.00--1.00---------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTTTTGAGACAGGCCC..............................................341.000.001.00-----------
...........................................................................................ACTTTTTTTCCCTTTTTAG............................................................................................................................................191.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTTAAGT.....................................................311.000.001.00-----------
...............................................................................................................................................................................TTTTTTTTTTTTTTTTTTGAGACAGGGGCCC............................................311.000.00-1.00----------
.......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTTTTTTGCTC.....................................................301.000.00-1.00----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTCC...........................................................251.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCGCC........................................................261.000.001.00-----------
.......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTTTTTCCC.......................................................281.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTATG..............................................................221.000.00--1.00---------
.......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTTTTTGGGA......................................................291.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTAAG.......................................................291.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTCGAG.........................................................271.000.00-1.00----------
..............................................................................................................................TTCTTTTTTAATTTTTCTTTTCTCCTG.................................................................................................271.000.00--1.00---------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTCTTT..........................................................261.000.001.00-----------
................................................................................................................................................................TGACTCTCAGACTTTTTTTTTTTTTTTTTTTG..........................................................321.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCTCG........................................................261.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCA.......................................................271.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTAGGG.........................................................251.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTC...........................................................251.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCG........................................................261.000.00-1.00----------
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGACG.............................................261.000.00---1.00--------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCCCC.......................................................271.000.001.00-----------
........................................................................................................................TTTATTTTCTTTTTTAAACAG.............................................................................................................211.000.00------1.00-----
.......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTTTTTTCGAG.....................................................301.000.001.00-----------
.......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTTTCGAG........................................................271.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCGGG........................................................261.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCAAG......................................................281.000.001.00-----------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTTTTGAGTGGG..................................................301.000.001.00-----------
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGGCGG............................................271.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGACC.....................................................291.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGTCGG....................................................301.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCTTC........................................................261.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGCG......................................................281.000.001.00-----------
....................................................................................................................................................................................TTTTTTTTTTTTTGAGACAGGGGTTC............................................261.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCCCC......................................................281.000.001.00-----------
...................................................................................................................................TTTTAATTTTTCTTTTCCTAC..................................................................................................211.000.00----1.00-------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCATC........................................................261.000.00-1.00----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTTC........................................................281.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTTATG......................................................301.000.00---1.00--------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTTAGG......................................................301.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCTTC.......................................................271.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGAGAAAGA.................................................331.000.001.00-----------
................................................................................................................ATTTTTGTTTTATTTTCTTTTTTTTC................................................................................................................261.000.00--1.00---------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCAGC........................................................261.000.001.00-----------
...................................................................................................................................TTTTAATTTTTCTTTTCTAGTG.................................................................................................221.000.00-1.00----------
...................................................................................................................TTTGTTTTATTTTCTTTTTTTTTC...............................................................................................................241.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCCTT......................................................281.000.001.00-----------
...................................................................................................................................TTTTAATTTTTCTTTTCTGCTTCATCC............................................................................................2711.001.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGCCAG....................................................301.000.001.00-----------
..................................................................................................................................................................ACTCTCAGACTTTTTTTTTTTTTTTTTTTTT.........................................................3111.001.00-----1.00------
...............................................................................................................................TCTTTTTTAATTTTTCTTTTG......................................................................................................211.000.00----1.00-------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGCTGT....................................................301.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTATGG.........................................................251.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCCTT.....................................................291.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCGT.......................................................271.000.00-1.00----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTCAG.......................................................291.000.001.00-----------
............................................................................................CTTTTTTTCCCTTTTAACGG..........................................................................................................................................201.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCCCG.......................................................271.000.001.00-----------
...........................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTGATACC...................................................281.000.00--1.00---------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCGA........................................................261.000.001.00-----------
..................................................................................................................................................................................TTTTTTTTTTTTTTTGAGACAGGGACCG............................................281.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGCGG.....................................................291.000.001.00-----------
.................................................................................TTTAAATAAAACTTTTTTCATA...................................................................................................................................................221.000.00-------1.00----
.......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTGCGG...........................................................241.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCTC.........................................................251.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTGGG.......................................................291.000.001.00-----------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTTTTGATCAG...................................................291.000.00-----1.00------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGTGAG....................................................301.000.00-1.00----------
...........................................................................................ACTTTTTTTCCCTTTTTGG............................................................................................................................................191.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGAAAGG...................................................311.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTCTT..........................................................261.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTGACC..........................................................261.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCGCC......................................................281.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGTAGT....................................................301.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTAGG...........................................................251.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTAGG..........................................................261.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCTAG........................................................261.000.001.00-----------
.............................................................................................................................TTTCTTTTTTAATTTTTCCCCC.......................................................................................................221.000.001.00-----------
..............................................................................................................................TTCTTTTTTAATTTTTCTTTTCCCTG..................................................................................................261.000.00----1.00-------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGTT......................................................281.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTCTTG..........................................................261.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTATGG.......................................................271.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCGCC.......................................................271.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTAAG..........................................................261.000.001.00-----------
.......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTTTTTCGAG......................................................291.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTAACG.......................................................271.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCTGG.....................................................291.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCCG......................................................281.000.00-1.00----------
.......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTTTTTTAAAC.....................................................301.000.001.00-----------
..................................................................................................................................TTTTTAATTTTTCTTTTAAAT...................................................................................................211.000.00-------1.00----
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGGGTG....................................................301.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCCGG........................................................261.000.00-1.00----------
................................................................................................................................................................TGACTCTCAGACTTTTTTTTTTTTG.................................................................251.000.00-1.00----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTGGG..........................................................261.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCTAG.......................................................271.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCCAG......................................................281.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCTC......................................................281.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTAC...........................................................251.000.00-1.00----------
..........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTTTTGATTGG...................................................291.000.00-1.00----------
......................................................................................................................................................................................................................ACCTCAGCTGGAGTACAGT.................1911.001.00----------1.00-
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCGAT......................................................281.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCGGC.......................................................271.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTCTTG............................................................241.000.001.00-----------
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTCAT........................................................281.000.00-1.00----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCAA......................................................281.000.001.00-----------
.......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTCG............................................................231.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCGAC........................................................261.000.001.00-----------
..............................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGAGACAGGCCCG.............................................311.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGCCG.....................................................291.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGTTG.....................................................291.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCCCG........................................................261.000.001.00-----------
.......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTTTTTAAC.......................................................281.000.001.00-----------
........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCGGC.....................................................291.000.001.00-----------
.................................................................................................................................................................................TTTTTTTTTTTTTTTTGAGACAGGGGCCG............................................291.000.00-1.00----------
.......................................................................................................................TTTTATTTTCTTTTTTAATTT..............................................................................................................2170.140.14------0.14-----
......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTTG........................................................2870.140.14-0.14----------
...................................................................................................................................................................CTCTCAGACTTTTTTTTTTT...................................................................2080.120.12--0.12---------

Antisense strand
ATAAATATGGAGAATGAGCAACACTGTTAGCCACAAAAGCCATACTCATGTACTTGATGGGCAATGATTTCAGATTTTATTTTTAAATAAAACTTTTTTTCCCTTTTAAAAAATTTTTGTTTTATTTTCTTTTTTAATTTTTCTTTTCTGCTTCATCCACTGACTCTCAGACTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTCACTCTCTGACCTCAGCTGGAGTACAGTAGCCAGATCACAACTCA
...............................................................................................................................................................(((..(((((((...................))))))))))..................................................
.......................................................................................................................120.............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189782SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
..................................................................................................................................................................................................AGACAGGGTCTCACTCTCTTTC.................................. 222.000.002.00-----------
...............................................................................................................................................................................................TTGAGACAGGGTCTCACTCTCTAAT.................................. 251.000.00---------1.00--
.................................................................GATTTCAGATTTTATTGGT...................................................................................................................................................................... 191.000.00--1.00---------
........................................................................GATTTTATTTTTAAACGGG............................................................................................................................................................... 191.000.00----1.00-------