| (1) B-CELL | (8) CELL-LINE | (1) LIVER | (2) OTHER | (1) XRN.ip |
| ATAAATATGGAGAATGAGCAACACTGTTAGCCACAAAAGCCATACTCATGTACTTGATGGGCAATGATTTCAGATTTTATTTTTAAATAAAACTTTTTTTCCCTTTTAAAAAATTTTTGTTTTATTTTCTTTTTTAATTTTTCTTTTCTGCTTCATCCACTGACTCTCAGACTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTCACTCTCTGACCTCAGCTGGAGTACAGTAGCCAGATCACAACTCA ...............................................................................................................................................................(((..(((((((...................)))))))))).................................................. .......................................................................................................................120.............................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR189782 | SRR033723(GSM497068) L1236 cell line (L1236). (B cell) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCTTG...................................................... | 28 | 15.00 | 0.00 | 12.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGGG...................................................... | 28 | 15.00 | 0.00 | 14.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCTTG..................................................... | 29 | 13.00 | 0.00 | 11.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGCTG..................................................... | 29 | 12.00 | 0.00 | 9.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCGAG..................................................... | 29 | 10.00 | 0.00 | 9.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCGAG....................................................... | 27 | 10.00 | 0.00 | 7.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCGAG...................................................... | 28 | 9.00 | 0.00 | 8.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCGG........................................................ | 26 | 5.00 | 0.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................TTTTATTTTCTTTTTTAATTTTTCTTTTCTG.................................................................................................... | 31 | 1 | 4.00 | 4.00 | - | - | - | 2.00 | 1.00 | 1.00 | - | - | - | - | - | - |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCGC....................................................... | 27 | 4.00 | 0.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCTGG...................................................... | 28 | 4.00 | 0.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCGG......................................................... | 25 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCG......................................................... | 25 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCTTT..................................................... | 29 | 3.00 | 0.00 | 1.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCCGG...................................................... | 28 | 3.00 | 0.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................TTTTATTTTCTTTTTTAATTTTTCTTCTG...................................................................................................... | 29 | 3.00 | 0.00 | - | - | - | 2.00 | - | 1.00 | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGGGG..................................................... | 29 | 3.00 | 0.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGTAG..................................................... | 29 | 3.00 | 0.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCTAG...................................................... | 28 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTAGG.............................................................. | 22 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCAC......................................................... | 25 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCGGG....................................................... | 27 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGTCGA............................................ | 27 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCAAG....................................................... | 27 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCGGG..................................................... | 29 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCAC........................................................ | 26 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCTT...................................................... | 28 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCTGC...................................................... | 28 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCTGC..................................................... | 29 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCAGG...................................................... | 28 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCCC........................................................ | 26 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCGCC..................................................... | 29 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................TGACTCTCAGACTTTTTTTTCGAG.................................................................. | 24 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................TGAGACAGGGTCTCACTCTCTGCCC................................. | 25 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCCGC........................................................ | 26 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTATG.......................................................... | 24 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCCC....................................................... | 27 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .........................................................TGGGCAATGATTTCAGATTTTATTTTTAAACAA................................................................................................................................................................ | 33 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCGGG...................................................... | 28 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCTGG....................................................... | 27 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCTTT...................................................... | 28 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCAG...................................................... | 28 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCGAC..................................................... | 29 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................ATTTTCTTTTTTAATTTTTCTTTTCTG.................................................................................................... | 27 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCAGG....................................................... | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................TTTTCTTTTTTAATTTTTCCCC........................................................................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCTCT........................................................ | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCGGC........................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTCTAG............................................................ | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTACTC....................................................... | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGGGAC.................................................... | 30 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCCGC...................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................TCTTTTTTAATTTTTCTTTTATTT................................................................................................... | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTAAAG......................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTCCGG...................................................... | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTCC.......................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTGTA............................................................. | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...AATATGGAGAATGAGCAACACTT................................................................................................................................................................................................................................ | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | |
| .......................................................................................................................................................................CAGACTTTTTTTTTTTTTGCAG............................................................. | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCCTC...................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................ACTTTTTTTCCCTTTTAACTT.......................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................TTTATTTTCTTTTTTAATTCTG............................................................................................................ | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCTGC........................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCGG....................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGTG...................................................... | 28 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGGGAG.................................................... | 30 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCTCC........................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTCCT........................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................TTTTTTTTTTTTTTTTTGAGACAGGGCTAT............................................ | 30 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTTTTGAGACAGGCCC.............................................. | 34 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................ACTTTTTTTCCCTTTTTAG............................................................................................................................................ | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTTAAGT..................................................... | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................TTTTTTTTTTTTTTTTTTGAGACAGGGGCCC............................................ | 31 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTTTTTTGCTC..................................................... | 30 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTCC........................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCGCC........................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTTTTTCCC....................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTATG.............................................................. | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTTTTTGGGA...................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTAAG....................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTCGAG......................................................... | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................TTCTTTTTTAATTTTTCTTTTCTCCTG................................................................................................. | 27 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTCTTT.......................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................TGACTCTCAGACTTTTTTTTTTTTTTTTTTTG.......................................................... | 32 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCTCG........................................................ | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCA....................................................... | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTAGGG......................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTC........................................................... | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCG........................................................ | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGACG............................................. | 26 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCCCC....................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................TTTATTTTCTTTTTTAAACAG............................................................................................................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| .......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTTTTTTCGAG..................................................... | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTTTCGAG........................................................ | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCGGG........................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCAAG...................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTTTTGAGTGGG.................................................. | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGGCGG............................................ | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGACC..................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGTCGG.................................................... | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCTTC........................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGCG...................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................TTTTTTTTTTTTTGAGACAGGGGTTC............................................ | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCCCC...................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................TTTTAATTTTTCTTTTCCTAC.................................................................................................. | 21 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCATC........................................................ | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTTC........................................................ | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTTATG...................................................... | 30 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTTAGG...................................................... | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCTTC....................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGAGAAAGA................................................. | 33 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................ATTTTTGTTTTATTTTCTTTTTTTTC................................................................................................................ | 26 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCAGC........................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................TTTTAATTTTTCTTTTCTAGTG................................................................................................. | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................TTTGTTTTATTTTCTTTTTTTTTC............................................................................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCCTT...................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................TTTTAATTTTTCTTTTCTGCTTCATCC............................................................................................ | 27 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGCCAG.................................................... | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................ACTCTCAGACTTTTTTTTTTTTTTTTTTTTT......................................................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...............................................................................................................................TCTTTTTTAATTTTTCTTTTG...................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGCTGT.................................................... | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTATGG......................................................... | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCCTT..................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCGT....................................................... | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTCAG....................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................CTTTTTTTCCCTTTTAACGG.......................................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCCCG....................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTGATACC................................................... | 28 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCGA........................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TTTTTTTTTTTTTTTGAGACAGGGACCG............................................ | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGCGG..................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................TTTAAATAAAACTTTTTTCATA................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| .......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTGCGG........................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCTC......................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTGGG....................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTTTTGATCAG................................................... | 29 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGTGAG.................................................... | 30 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................ACTTTTTTTCCCTTTTTGG............................................................................................................................................ | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGAAAGG................................................... | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTCTT.......................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTGACC.......................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCGCC...................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGTAGT.................................................... | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTAGG........................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTAGG.......................................................... | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCTAG........................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................TTTCTTTTTTAATTTTTCCCCC....................................................................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................TTCTTTTTTAATTTTTCTTTTCCCTG.................................................................................................. | 26 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGTT...................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTCTTG.......................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTATGG....................................................... | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCGCC....................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTAAG.......................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTTTTTCGAG...................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTAACG....................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCTGG..................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCCG...................................................... | 28 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTTTTTTAAAC..................................................... | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................TTTTTAATTTTTCTTTTAAAT................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGGGTG.................................................... | 30 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCCGG........................................................ | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................TGACTCTCAGACTTTTTTTTTTTTG................................................................. | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTGGG.......................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCTAG....................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCCAG...................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCTC...................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTAC........................................................... | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTTTTGATTGG................................................... | 29 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................ACCTCAGCTGGAGTACAGT................. | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTCGAT...................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTCGGC....................................................... | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTCTTG............................................................ | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTCAT........................................................ | 28 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCAA...................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTCG............................................................ | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCGAC........................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGAGACAGGCCCG............................................. | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGCCG..................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTGTTG..................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTCCCG........................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CAGACTTTTTTTTTTTTTTTTTTTTAAC....................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AGACTTTTTTTTTTTTTTTTTTTTTCGGC..................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................TTTTTTTTTTTTTTTTGAGACAGGGGCCG............................................ | 29 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................TTTTATTTTCTTTTTTAATTT.............................................................................................................. | 21 | 7 | 0.14 | 0.14 | - | - | - | - | - | - | 0.14 | - | - | - | - | - |
| ......................................................................................................................................................................TCAGACTTTTTTTTTTTTTTTTTTTTTG........................................................ | 28 | 7 | 0.14 | 0.14 | - | 0.14 | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................CTCTCAGACTTTTTTTTTTT................................................................... | 20 | 8 | 0.12 | 0.12 | - | - | 0.12 | - | - | - | - | - | - | - | - | - |
| ATAAATATGGAGAATGAGCAACACTGTTAGCCACAAAAGCCATACTCATGTACTTGATGGGCAATGATTTCAGATTTTATTTTTAAATAAAACTTTTTTTCCCTTTTAAAAAATTTTTGTTTTATTTTCTTTTTTAATTTTTCTTTTCTGCTTCATCCACTGACTCTCAGACTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTCACTCTCTGACCTCAGCTGGAGTACAGTAGCCAGATCACAACTCA ...............................................................................................................................................................(((..(((((((...................)))))))))).................................................. .......................................................................................................................120.............................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR189782 | SRR033723(GSM497068) L1236 cell line (L1236). (B cell) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................................AGACAGGGTCTCACTCTCTTTC.................................. | 22 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................TTGAGACAGGGTCTCACTCTCTAAT.................................. | 25 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| .................................................................GATTTCAGATTTTATTGGT...................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ........................................................................GATTTTATTTTTAAACGGG............................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - |