| (1) BREAST | (7) CELL-LINE | (1) HELA | (5) OTHER | (2) SKIN |
| AAGACGTCCCAATATTCTAGGGCTCTCACTTATTTCAGTGTTGTTCCCAATTGCTTATACATTTAAAATAACAACTTCTTCGACCTGCCTAAACTATATGATTCTTTGGTGAAAAATAAATAATATGATCAGATTTGTGTCAACAAATATACATGCCTCAGAAAGAGACTATTTTACTTTTTTTTTTTTAATCTCTACAGAAAGTTCTCAGGAACAAAAGCCAGAGCATGGAAACAGTGTTAAGGTAAGT ...........................................................................................................................((((.....((((((....))))))...))))........(((((.((.................)).)))))...................................................... ...................................................................................................................116.................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR189784 | SRR330912(SRX091750) tissue: normal skindisease state: normal. (skin) | SRR189787 | SRR189782 | SRR189785 | SRR343335 | TAX577745(Rovira) total RNA. (breast) | SRR330879(SRX091717) tissue: skin psoriatic involveddisease state:. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAAAAG........................................................ | 23 | 2667.00 | 0.00 | 955.00 | 732.00 | 488.00 | 408.00 | 82.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAAAAAG....................................................... | 24 | 135.00 | 0.00 | 53.00 | 35.00 | 18.00 | 16.00 | 13.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAAAAT........................................................ | 23 | 108.00 | 0.00 | 43.00 | 36.00 | 12.00 | 15.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAAATG........................................................ | 23 | 18.00 | 0.00 | 10.00 | 5.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTATAAG........................................................ | 23 | 15.00 | 0.00 | 3.00 | 7.00 | 2.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAAAAGG....................................................... | 24 | 9.00 | 0.00 | - | 3.00 | 2.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ATTTTACTTTTTTTTTTAAG............................................................ | 20 | 9.00 | 0.00 | 4.00 | 2.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAAAAAT....................................................... | 24 | 8.00 | 0.00 | 3.00 | 3.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................TTACTTTTTTTTTTTTACAG......................................................... | 20 | 7.00 | 0.00 | - | - | 3.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................TATTTTACTTTTTTTTTTAAG............................................................ | 21 | 7.00 | 0.00 | 3.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAAACG........................................................ | 23 | 6.00 | 0.00 | 1.00 | 2.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAATAT........................................................ | 23 | 4.00 | 0.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TACTTTTTTTTTTTTAATCTACTG.................................................... | 24 | 4.00 | 0.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAGAAG........................................................ | 23 | 4.00 | 0.00 | 2.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTATTTG........................................................ | 23 | 3.00 | 0.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................ACTTTTTTTTTTTTAATCCG....................................................... | 20 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTACAAG........................................................ | 23 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................ACTATTTTACTTTTTTTTTTTTTTTG......................................................... | 26 | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTATATG........................................................ | 23 | 2.00 | 0.00 | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................TTTACTTTTTTTTTTTTAATAT........................................................ | 22 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................TATTTTACTTTTTTTTTTTTCCG.......................................................... | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................ACTATTTTACTTTTTTTTTTTG............................................................. | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................TTTTTTTTTTAATCTCTATAG.................................................. | 21 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTATTAG........................................................ | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ATTTTACTTTTTTTTTTTTATTC......................................................... | 23 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAATTTAA...................................................... | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................CTTTTTTTTTTTTAATCTCTGGGT.................................................. | 24 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................TTTTTTTTTTTAATCTCTACTCTG................................................ | 24 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................CTATTTTACTTTTTTTTTTTTG............................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTACCAG........................................................ | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................CTATTTTACTTTTTTTTTAAAG............................................................ | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTATATT........................................................ | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAAAACG....................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAATAAG....................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................CTTTTTTTTTTTTAATCTCACG.................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAACAAG....................................................... | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................TTTACTTTTTTTTTTTTATG.......................................................... | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAAAAC........................................................ | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................CTATTTTACTTTTTTTTTTTG............................................................. | 21 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................CTTTTTTTTTTTTAATCTCCTG.................................................... | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ATTTTACTTTTTTTTTTTTAATTG........................................................ | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................TTTACTTTTTTTTTTTTACCAC........................................................ | 22 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................CTTTTTTTTTTTTAATCTCCAG.................................................... | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................CTTTTTTTTTTTTAATCTCTCAAG.................................................. | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................TTACTTTTTTTTTTTTAATCTCTTTC................................................... | 26 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................ACTTTTTTTTTTTTAATCTCTTAAG.................................................. | 25 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................TTTTTTTTTTTTAATCTCTTCCT.................................................. | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................ACTATTTTACTTTTTTTTTTG.............................................................. | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................TATTTTACTTTTTTTTTTGGGA........................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ATTTTACTTTTTTTTTTTTCGAG......................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAAACA........................................................ | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................TATTTTACTTTTTTTTTTTGGG........................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTATG.......................................................... | 21 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................ATATACATGCCTCAGAGA...................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ..........................................................................................................................................................................ATTTTACTTTTTTTTTTTTATATT........................................................ | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAACGC........................................................ | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAAAATT....................................................... | 24 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................CTATTTTACTTTTTTTTTCTG............................................................. | 21 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAAAATG....................................................... | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ATTTTACTTTTTTTTTTTCCTG.......................................................... | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................TTTACTTTTTTTTTTTTAGAAG........................................................ | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................ACTTTTTTTTTTTTAATCTCTTCAG.................................................. | 25 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAATTG........................................................ | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTATGAA........................................................ | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................TACTTTTTTTTTTTTAATCTTTAT.................................................... | 24 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAAAGT........................................................ | 23 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................TATTTTACTTTTTTTTTTTTAATTTAG...................................................... | 27 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................ATTTTACTTTTTTTTTTTTAAATAG....................................................... | 25 | 9 | 0.78 | 0.11 | 0.11 | 0.22 | 0.44 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................TATTTTACTTTTTTTTTTTTAA........................................................... | 22 | 5 | 0.60 | 0.60 | - | 0.40 | - | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................TATTTTACTTTTTTTTTTTTAAAG......................................................... | 24 | 5 | 0.20 | 0.60 | - | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................TAATATGATCAGATTTGT................................................................................................................ | 18 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 |
| ..........................................................................................................................................................................ATTTTACTTTTTTTTTTTTAAACG........................................................ | 24 | 9 | 0.11 | 0.11 | - | - | - | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................ATTTTACTTTTTTTTTTTTAA........................................................... | 21 | 9 | 0.11 | 0.11 | - | - | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| AAGACGTCCCAATATTCTAGGGCTCTCACTTATTTCAGTGTTGTTCCCAATTGCTTATACATTTAAAATAACAACTTCTTCGACCTGCCTAAACTATATGATTCTTTGGTGAAAAATAAATAATATGATCAGATTTGTGTCAACAAATATACATGCCTCAGAAAGAGACTATTTTACTTTTTTTTTTTTAATCTCTACAGAAAGTTCTCAGGAACAAAAGCCAGAGCATGGAAACAGTGTTAAGGTAAGT ...........................................................................................................................((((.....((((((....))))))...))))........(((((.((.................)).)))))...................................................... ...................................................................................................................116.................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR189784 | SRR330912(SRX091750) tissue: normal skindisease state: normal. (skin) | SRR189787 | SRR189782 | SRR189785 | SRR343335 | TAX577745(Rovira) total RNA. (breast) | SRR330879(SRX091717) tissue: skin psoriatic involveddisease state:. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .................................................................................................................AAATAAATAATATGATATCG..................................................................................................................... | 20 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................CTGTTTCCATGCTCTGGCTTTTGTTCCT............. | 28 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ..............................TATTTCAGTGTTGTTCTTG......................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ......................................................................................................................AATAATATGATCAGAGCC.................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ...........................................................................................................................................................................TTTTACTTTTTTTTTTTTAACCTT....................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................................................ACAGTGTTAAGGTAAGGCAG | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |