ID: uc002ulb.1_intron_8_0_chr2_178083888_f
GENE: HNRNPA3(9)
chr2:178083838-178084024+


(2)
AGO2.ip 		(11)
B-CELL 		(7)
BRAIN 		(9)
BREAST 		(31)
CELL-LINE 		(3)
CERVIX 		(14)
HELA 		(1)
KIDNEY 		(11)
LIVER 		(2)
OTHER 		(21)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
CATGAAAGGGGGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTGGTAAGTACTTTCTTAAATCAATTCTTTAGAGCCTTTTTAATTTAAAAAATGTGCATACTTCTTTTAAAATACTATGTATATTTTCAGGTGGTTATGGATCTGGTGGTGGAAGTGGTGGATATGGTAGCAGAAGGTTC
...................................................((((......))))..............................((((((((((((...............)))))))))))).....................................................
..................................................51....................................................................................137................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		GSM359178(GSM359178)
hela_nucl_t. (hela)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		GSM359175(GSM359175)
hela_5_pct. (hela)		GSM359180(GSM359180)
hela_phil_smrna_cyto. (hela)		TAX577589(Rovira)
total RNA. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR343334GSM359173(GSM359173)
hela_10_1. (hela)		GSM359174(GSM359174)
hela_5_1. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR189786TAX577744(Rovira)
total RNA. (breast)		GSM359181(GSM359181)
hela_phil_smrna_nuc. (hela)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189782SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR029124(GSM416753)
HeLa. (hela)		TAX577580(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR029128(GSM416757)
H520. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532876(GSM532876)
G547T. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR038859(GSM458542)
MM386. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................GTAAGTACTTTCTTAAATCAATTCTTTAGAGCCTTTTTAATTTAAAAAATGTGCATACTTCTTTTAAAATACTATGTATATTTTCAG..................................................87149.0049.00--24.00-23.00-------------2.00-------------------------------------------------------------------------------------------------
..................................................GTAAGTACTTTCTTAAATCAATTCTT...............................................................................................................26138.0038.00-----20.006.00---3.003.00--------2.002.00----2.00-----------------------------------------------------------------------------------------
...........................AAGCTCGGGCAGTCCCTATGGTGGTGGC....................................................................................................................................289.000.004.00--5.00----------------------------------------------------------------------------------------------------------------
...........................AAGCTCGGGCAGTCCCTATGGTGGTGGTC...................................................................................................................................296.000.004.00--2.00----------------------------------------------------------------------------------------------------------------
..................................................GTAAGTACTTTCTTAAATCAATTCTTTAGAGCCTTTTTAATTTAAAAAATGTGCATACTTCTTTTAAAATACTATGTATATTTTCA...................................................8616.006.00--6.00-----------------------------------------------------------------------------------------------------------------
...............TTTTGGTGGAAGAAGCTCGGGCAGCCCC................................................................................................................................................285.000.003.00-----------------------2.00-------------------------------------------------------------------------------------------
...........................AAGCTCGGGCAGTCCCTATGGTGGTGGCT...................................................................................................................................295.000.003.00--2.00----------------------------------------------------------------------------------------------------------------
................TTTGGTGGAAGAAGCTCGGGCAGTCCCC...............................................................................................................................................283.000.003.00-------------------------------------------------------------------------------------------------------------------
............................AGCTCGGGCAGTCCCTATGGTGGTGGTC...................................................................................................................................283.000.002.00--1.00----------------------------------------------------------------------------------------------------------------
....................GTGGAAGAAGCTCGGGCA.....................................................................................................................................................1862.172.17-------1.170.33-------------------0.33-----0.17-----------------------0.17---------------------------------------------------------
........................AAGAAGCTCGGGCAGTCCCTATGGTGA........................................................................................................................................272.000.00---------------2.00----------------------------------------------------------------------------------------------------
...........................AAGCTCGGGCAGTCCCTATGGTGGTGTC....................................................................................................................................282.000.00---2.00----------------------------------------------------------------------------------------------------------------
.................TTGGTGGAAGAAGCTCGGGCAGTCCCCA..............................................................................................................................................282.000.002.00-------------------------------------------------------------------------------------------------------------------
...........................AAGCTCGGGCAGTCCCTATGGTGGTGGG....................................................................................................................................282.000.002.00-------------------------------------------------------------------------------------------------------------------
........................AAGAAGCTCGGGCAGTCCCTATGGTGGTGGTC...................................................................................................................................322.000.002.00-------------------------------------------------------------------------------------------------------------------
...........................AAGCTCGGGCAGTCCCTATGGTGGCGGG....................................................................................................................................282.000.002.00-------------------------------------------------------------------------------------------------------------------
..................................................GTAAGTACTTTCTTAAATCAATTCTTTAGAGCCTTTTTAATTTAAAAAATGTGCATACTTCTTTTAAAATACTATGTATATTTT.....................................................8412.002.00--2.00-----------------------------------------------------------------------------------------------------------------
...........................AAGCTCGGGCAGTCCCTATGGTGGTGGGC...................................................................................................................................292.000.002.00-------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................ATCTGGTGGTGGAAGTGGTGGAC.................232.000.002.00-------------------------------------------------------------------------------------------------------------------
...........................AAGCTCGGGCAGTCCCTATGGTGGCGG.....................................................................................................................................272.000.00---2.00----------------------------------------------------------------------------------------------------------------
..........................................................................................................................................TGGTTATGGATCTGGTA................................172.000.00----------------------2.00---------------------------------------------------------------------------------------------
............................AGCTCGGGCAGTCCCTATGGTGGTGGC....................................................................................................................................272.000.002.00-------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................AAGTGGTGGATATGGTAGG.........192.000.00---------2.00----------------------------------------------------------------------------------------------------------
....................GTGGAAGAAGCTCGGGCAG....................................................................................................................................................1961.501.50-------0.330.33-----0.170.17------------------------------------------0.17----------0.17---0.17------------------------------------------
...........................AAGCTCGGGCAGTCCCTATGGTGGCC......................................................................................................................................261.000.001.00-------------------------------------------------------------------------------------------------------------------
...................GGTGGAAGAAGCTCGTACG.....................................................................................................................................................191.000.00----------------1.00---------------------------------------------------------------------------------------------------
...........................AAGCTCGGGCAGTCCCTATGGTGGTGGCG...................................................................................................................................291.000.001.00-------------------------------------------------------------------------------------------------------------------
........................AAGAAGCTCGGGCAGTCCCTATGGTGGTGGCT...................................................................................................................................321.000.00---1.00----------------------------------------------------------------------------------------------------------------
.............................GCTCGGGCAGTCCCTATGGTGGTAAGTAC.................................................................................................................................2911.001.00-----------------------------------------------------1.00--------------------------------------------------------------
.....................................................................................................................................................CTGGTGGTGGAAGTGGC.....................171.000.00-----------------------------------1.00--------------------------------------------------------------------------------
...................................................................................................................................................ATCTGGTGGTGGAAGTGGTGGATACGG.............271.000.00---1.00----------------------------------------------------------------------------------------------------------------
................................................................................................................................................................AGTGGTGGATATGGTAGGAGA......211.000.00-----------------1.00--------------------------------------------------------------------------------------------------
.........................AGAAGCTCGGGCAGTCCCTATGGTGGCGG.....................................................................................................................................291.000.00---1.00----------------------------------------------------------------------------------------------------------------
..........................................................................................................................................TGGTTATGGATCTGGTGTT..............................191.000.00-------------------------------------------1.00------------------------------------------------------------------------
...........................AAGCTCGGGCAGTCCCTATGGTGGGGGC....................................................................................................................................281.000.001.00-------------------------------------------------------------------------------------------------------------------
...........................AAGCTCGGGCAGTCCCTATGGTGCGGT.....................................................................................................................................271.000.001.00-------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................GTGGTGGATATGGTAGGAG.......191.000.00--------1.00-----------------------------------------------------------------------------------------------------------
........................AAGAAGCTCGGGCAGTCCCTATGGCGG........................................................................................................................................271.000.00---1.00----------------------------------------------------------------------------------------------------------------
..........................GAAGCTCGGGCAGTCCCTATGGTGGTGGCC...................................................................................................................................301.000.001.00-------------------------------------------------------------------------------------------------------------------
............................AGCTCGGGCAGTCCCTATGGTGGTGGGC...................................................................................................................................281.000.001.00-------------------------------------------------------------------------------------------------------------------
............................AGCTCGGGCAGTCCCTATGGTGGCGG.....................................................................................................................................261.000.00---1.00----------------------------------------------------------------------------------------------------------------
.................TTGGTGGAAGAAGCTCGGGCAGTCCCA...............................................................................................................................................271.000.00---------------------------------1.00----------------------------------------------------------------------------------
....................................................................................................................................................................GTGGATATGGTAGCAGAAAGTT.221.000.00------------------------------------1.00-------------------------------------------------------------------------------
.........................AGAAGCTCGGGCAGTCCCTATGGTGGTGGTC...................................................................................................................................311.000.001.00-------------------------------------------------------------------------------------------------------------------
................................................................................................................................................TGGATCTGGTGGTGGAAGTGGTGGGTA................271.000.001.00-------------------------------------------------------------------------------------------------------------------
....................GTGGAAGAAGCTCGGGCCGGC..................................................................................................................................................211.000.00----------------------------1.00---------------------------------------------------------------------------------------
.....................................................................................................................AATACTATGTATATTTTCAG..................................................2011.001.00-------------------------------1.00------------------------------------------------------------------------------------
.........................AGAAGCTCGGGCAGTCCCTATGGTGGTGGGC...................................................................................................................................311.000.001.00-------------------------------------------------------------------------------------------------------------------
................TTTGGTGGAAGAAGCTCGGGCAGTCCCATGG............................................................................................................................................311.000.001.00-------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................ATCTGGTGGTGGAAGTGGTGGATAA...............251.000.00------------------------------1.00-------------------------------------------------------------------------------------
.........................................................................................................TACTTCTTTTAAAATACTAT..............................................................2011.001.00-----------------1.00--------------------------------------------------------------------------------------------------
..............................CTCGGGCAGTCCCTATGGTGGTGGTA...................................................................................................................................261.000.00---1.00----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................GGTGGATATGGTAGCAGAAT....201.000.00-------------1.00------------------------------------------------------------------------------------------------------
....................................................................................................................................................TCTGGTGGTGGAAGTGGTGGATACGG.............261.000.00---1.00----------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................GTGGATATGGTAGCAGAAA....191.000.00---------1.00----------------------------------------------------------------------------------------------------------
..............................................................................................................................................................GAAGTGGTGGATATGGTAGGAG.......221.000.00---------------------------1.00----------------------------------------------------------------------------------------
..............................................................................................................CTTTTAAAATACTATGTATATTTTCATA.................................................281.000.00-----------------------------------------1.00--------------------------------------------------------------------------
..................................................................................................................................................................TGGTGGATATGGTAGCAGAAGGTTCCA271.000.00---1.00----------------------------------------------------------------------------------------------------------------
...................................................................................................................................................ATCTGGTGGTGGAAGTGGTGGGC.................231.000.001.00-------------------------------------------------------------------------------------------------------------------
.......................................................TACTTTCTTAAATCAAGA..................................................................................................................181.000.00----------------------------------------------1.00---------------------------------------------------------------------
........................AAGAAGCTCGGGCAGTCCCTATGGTGGTGGG....................................................................................................................................311.000.001.00-------------------------------------------------------------------------------------------------------------------
................TTTGGTGGAAGAAGCTCGGGCAGTCCCTACGG...........................................................................................................................................321.000.00---1.00----------------------------------------------------------------------------------------------------------------
......................................................................................................................................................TGGTGGTGGAAGTGGTGGATATGGTAGCAGAAGGG..351.000.00-------------------------------------1.00------------------------------------------------------------------------------
..................................................GTAAGTACTTTCTTAAATCA.....................................................................................................................2011.001.00----------------------------------------------------1.00---------------------------------------------------------------
...........................AAGCTCGGGCAGTCCCTATGGTGGGGGG....................................................................................................................................281.000.001.00-------------------------------------------------------------------------------------------------------------------
............................AGCTCGGGCAGTCCCTATGGTGGCGGC....................................................................................................................................271.000.00---1.00----------------------------------------------------------------------------------------------------------------
........................AAGAAGCTCGGGCAGTCCCTATGGTGGTGGGC...................................................................................................................................321.000.001.00-------------------------------------------------------------------------------------------------------------------
.........................................................................................................................CTATGTATATTTTCAGGTG...............................................1911.001.00---------------------------------------1.00----------------------------------------------------------------------------
.................................................................................................................................................................GTGGTGGATATGGTAGCAGAAGGTTT261.000.00----------------------------------1.00---------------------------------------------------------------------------------
............................AGCTCGGGCAGTCCCTATGGTGGGGGT....................................................................................................................................271.000.001.00-------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................AGTGGTGGATATGGTATTT........191.000.00--------1.00-----------------------------------------------------------------------------------------------------------
................................................................................................................................................................AGTGGTGGATATGGTAGCAGAAGGCTC271.000.00---1.00----------------------------------------------------------------------------------------------------------------
............................AGCTCGGGCAGTCCCTATGGTGGTGGGT...................................................................................................................................281.000.001.00-------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................TGGTTATGGATCTGGTGGTGGAAGTGTTGG...................301.000.00-------------------------------------------------------1.00------------------------------------------------------------
...............................................................................................................................................ATGGATCTGGTGGTGGAAGTGGTGGATACGG.............311.000.00---1.00----------------------------------------------------------------------------------------------------------------
..................................................GTAAGTACTTTCTTAAATCAATTCTTTAGAGCCTTTTTAATTTAAAAAATGTGCATAC...............................................................................5811.001.00-------------------------------------------------1.00------------------------------------------------------------------
............................................................................................................................................................TGGAAGTGGTGGATATGGTAGCCA.......241.000.00-------------1.00------------------------------------------------------------------------------------------------------
...........................AAGCTCGGGCAGTCCCTATGGTGGAGG.....................................................................................................................................271.000.001.00-------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................TGGTGGATATGGTAGCAA.......181.000.00--------------------------------1.00-----------------------------------------------------------------------------------
.......................................................................................................................................AGGTGGTTATGGATCTGGTGGTGGA...........................2511.001.001.00-------------------------------------------------------------------------------------------------------------------
......................GGAAGAAGCTCGGGCAGT...................................................................................................................................................1860.830.83-------0.33-------------------0.33------------------------------------------0.17---------------------------------------------
...............................................................................................................................................ATGGATCTGGTGGTGGAAGTGGTGGAC.................2770.710.430.57--0.14----------------------------------------------------------------------------------------------------------------
...............................................................................................................................................ATGGATCTGGTGGTGGAAG.........................1970.710.71-------0.57------0.14-----------------------------------------------------------------------------------------------------
.....................TGGAAGAAGCTCGGGCAG....................................................................................................................................................1860.670.67--------------------------------------------------------0.67-----------------------------------------------------------
...................GGTGGAAGAAGCTCGGGCAG....................................................................................................................................................2060.500.50--------------0.33------------------------------------------------------------------0.17----------------------------------
.................TTGGTGGAAGAAGCTCGGGCAG....................................................................................................................................................2240.500.50---------------------------0.25--------0.25-------------------------------------------------------------------------------
.................TTGGTGGAAGAAGCTCGGGCAGCCCC................................................................................................................................................2640.500.500.50-------------------------------------------------------------------------------------------------------------------
................TTTGGTGGAAGAAGCTCGGGCAG....................................................................................................................................................2340.500.50---------------------------------------------------------0.50----------------------------------------------------------
.................TTGGTGGAAGAAGCTCGGGCAGTCC.................................................................................................................................................2540.500.50--------------------------------0.25--------------------------0.25--------------------------------------------------------
.....................................................................................................................................................................TGGATATGGTAGCAGAAGGTT.2190.440.44--------0.11-----0.22----------------------------------------------------------0.11------------------------------------------
..............................................................................................................................................TATGGATCTGGTGGTGGAAG.........................2070.430.43-------0.29--------------------0.14---------------------------------------------------------------------------------------
...............................................................................................................................................ATGGATCTGGTGGTGGAAGTG.......................2170.430.43-------------------------------------------------------------0.29----------------------------0.14-------------------------
...............................................................................................................................................ATGGATCTGGTGGTGGAAGTGGTGGA..................2670.430.430.29-----------------------------------------------------------------------------------------------0.14-------------------
...............................................................................................................................................ATGGATCTGGTGGTGGAAGTGGTG....................2470.430.43-----------------------------0.29--------------------------------------------------------------0.14-----------------------
................................................................................................................................................TGGATCTGGTGGTGGAAG.........................1870.430.43-------0.29-----------------------------------------------------------------------------------0.14------------------------
..................TGGTGGAAGAAGCTCGGGCAGTCA.................................................................................................................................................2450.400.20---------0.20------------------------------------------------0.20---------------------------------------------------------
..................TGGTGGAAGAAGCTCGGGCA.....................................................................................................................................................2050.400.40---------------------------0.20--------------------------------------0.20-------------------------------------------------
..................TGGTGGAAGAAGCTCGGGCAGT...................................................................................................................................................2250.400.40-------------0.20------------------------------------------------0.20-----------------------------------------------------
.........................................................................................................................................................TGGTGGAAGTGGTGGATATGGT............2280.380.38-------0.12------0.12-------------------------------------------------------------------------------------0.12---------------
.........................................................................................................................................................TGGTGGAAGTGGTGGATATG..............2080.380.38-------0.25-----------------------------------------------------------------------------------------------0.12------------
....................................................................................................................................................................GTGGATATGGTAGCAGAAGGTT.2290.330.33--------0.11-----0.110.11----------------------------------------------------------------------------------------------------
.......................GAAGAAGCTCGGGCAGTCC.................................................................................................................................................1960.330.33----------------0.17----------------0.17----------------------------------------------------------------------------------
................TTTGGTGGAAGAAGCTCG.........................................................................................................................................................1860.330.33--------0.17-----------------------------------------------------------------------0.17-----------------------------------
...................GGTGGAAGAAGCTCGGGCA.....................................................................................................................................................1960.330.33-------------0.170.17-----------------------------------------------------------------------------------------------------
...........................................................................................................................................................GTGGAAGTGGTGGATATGG.............1990.330.33-------0.22-------------------------------------------------------------------------------------------------------0.11----
....................GTGGAAGAAGCTCGGGCAGTCCC................................................................................................................................................2360.330.33------------------------------------------------------------------0.17--0.17----------------------------------------------
...................GGTGGAAGAAGCTCGGGCAGT...................................................................................................................................................2160.330.33--------0.33-----------------------------------------------------------------------------------------------------------
........................AAGAAGCTCGGGCAGTCCC................................................................................................................................................1960.330.33------------------------------------------------------------------------0.17-----------0.17-------------------------------
.......................GAAGAAGCTCGGGCAGTC..................................................................................................................................................1860.330.33--------0.170.17----------------------------------------------------------------------------------------------------------
......................GGAAGAAGCTCGGGCAGTC..................................................................................................................................................1960.330.33----------------------------------------------------------------------0.17-----------0.17---------------------------------
..............................................................................................................................................................GAAGTGGTGGATATGGTAGCA........2190.330.33-----------------0.11----------0.11-----0.11---------------------------------------------------------------------------------
............................................................................................................................................................TGGAAGTGGTGGATATGGTA...........2090.330.33--------0.11----------------------------------------------------------0.22------------------------------------------------
......................GGAAGAAGCTCGGGCAGTCCCTATGGTGG........................................................................................................................................2960.330.33-----------------------------0.33--------------------------------------------------------------------------------------
...............................................................................................................................................ATGGATCTGGTGGTGGAAGTGG......................2270.290.290.14----------------------------------0.14--------------------------------------------------------------------------------
...................................................................................................................................................ATCTGGTGGTGGAAGTGGTGGATATGGTAGC.........3170.290.29---0.29----------------------------------------------------------------------------------------------------------------
...............................................................................................................................................ATGGATCTGGTGGTGGAAGTGGTGGAA.................2770.290.430.29-------------------------------------------------------------------------------------------------------------------
................................CGGGCAGTCCCTATGGTG.........................................................................................................................................1870.290.29-----------------------------------------------------------------------0.29--------------------------------------------
................................................................................................................................................TGGATCTGGTGGTGGAAGTG.......................2070.290.29-------0.14------------------------------------------------------------------------------0.14-----------------------------
..................TGGTGGAAGAAGCTCGGG.......................................................................................................................................................1870.290.29-------0.14------0.14-----------------------------------------------------------------------------------------------------
................................................................................................................................................TGGATCTGGTGGTGGAAGTGGTGGAC.................2670.290.140.29-------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................GATCTGGTGGTGGAAGTGGTG....................2170.290.29-------------0.14-------------------------------------------------------------0.14----------------------------------------
.............AGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTA..............................................................................................................................................3240.250.250.25-------------------------------------------------------------------------------------------------------------------
................TTTGGTGGAAGAAGCTCGGGCAGTCC.................................................................................................................................................2640.250.25---------------------------------------------------------------0.25----------------------------------------------------
................TTTGGTGGAAGAAGCTCGGGCAGT...................................................................................................................................................2440.250.250.25-------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................TGGTGGAAGTGGTGGATATGGTA...........2380.250.25-------0.12------0.12-----------------------------------------------------------------------------------------------------
.............AGTTTTGGTGGAAGAAGCTCGGGCAG....................................................................................................................................................2640.250.25-----------------------------------------------------------------0.25--------------------------------------------------
.................TTGGTGGAAGAAGCTCGGGCAGTCCCT...............................................................................................................................................2740.250.250.25-------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................TCTGGTGGTGGAAGTGGTGGAT.................2280.250.25--------------------------------------------------------------------------0.12------------------------0.12----------------
.....................................................................................................................................................CTGGTGGTGGAAGTGGTGGA..................2080.250.25-----------------------------------------------------------0.12-----------------------------------------0.12--------------
.....................................................................................................................................................CTGGTGGTGGAAGTGGTGGATAT...............2380.250.25--------------0.25-----------------------------------------------------------------------------------------------------
..............GTTTTGGTGGAAGAAGCTCGGGCAGTCCC................................................................................................................................................2940.250.25----------------------------------------------------------------0.25---------------------------------------------------
.................TTGGTGGAAGAAGCTCGGGCA.....................................................................................................................................................2140.250.25--------------0.25-----------------------------------------------------------------------------------------------------
...............TTTTGGTGGAAGAAGCTCGGGCA.....................................................................................................................................................2340.250.25-------------------------------0.25------------------------------------------------------------------------------------
................TTTGGTGGAAGAAGCTCGGGCAGCCCC................................................................................................................................................2740.250.500.25-------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................GTGGAAGTGGTGGATATG..............1890.220.22-------0.11-------0.11----------------------------------------------------------------------------------------------------
...................................................................................................................................................................GGTGGATATGGTAGCAGAAGGTTC2490.220.22---------0.22----------------------------------------------------------------------------------------------------------
............................................................................................................................................................TGGAAGTGGTGGATATGGTAG..........2190.220.22--------------------------------0.11--------------------------------------------------------------------------------0.11--
.....................................................................................................................................................................TGGATATGGTAGCAGAAGGT..2090.220.22-------0.11---------------------------------------------------0.11--------------------------------------------------------
.ATGAAAGGGGGCAGTTTTGGTGGAAGAAGC............................................................................................................................................................3050.200.20--------------------------------------------------------------------0.20-----------------------------------------------
............CAGTTTTGGTGGAAGAAGCTCGG........................................................................................................................................................2350.200.20------------------------------------------------------------0.20-------------------------------------------------------
......AGGGGGCAGTTTTGGTGGAAGAAGCTC..........................................................................................................................................................2750.200.20-------------------------------------------------------------------------------0.20------------------------------------
..................TGGTGGAAGAAGCTCGGGCAGTCC.................................................................................................................................................2450.200.20-----------------------------------------------------------------------------0.20--------------------------------------
..................TGGTGGAAGAAGCTCGGGCAGCC..................................................................................................................................................2350.200.20------------------------------0.20-------------------------------------------------------------------------------------
..................TGGTGGAAGAAGCTCGGGCAGTC..................................................................................................................................................2350.200.20--------------0.20-----------------------------------------------------------------------------------------------------
..................TGGTGGAAGAAGCTCGGGCAGCCCC................................................................................................................................................2550.200.200.20-------------------------------------------------------------------------------------------------------------------
...............TTTTGGTGGAAGAAGCTCGGGC......................................................................................................................................................2250.200.20-------0.20------------------------------------------------------------------------------------------------------------
..................TGGTGGAAGAAGCTCGGGCAG....................................................................................................................................................2150.200.20-------0.20------------------------------------------------------------------------------------------------------------
..................TGGTGGAAGAAGCTCGGGCAGTCCCTA..............................................................................................................................................2750.200.20---------0.20----------------------------------------------------------------------------------------------------------
..................TGGTGGAAGAAGCTCGGGCAGTCCCT...............................................................................................................................................2650.200.200.20-------------------------------------------------------------------------------------------------------------------
........................AAGAAGCTCGGGCAGTCC.................................................................................................................................................1860.170.17--------0.17-----------------------------------------------------------------------------------------------------------
.....................TGGAAGAAGCTCGGGCAGT...................................................................................................................................................1960.170.17-------------------------------------------------------------0.17------------------------------------------------------
......................GGAAGAAGCTCGGGCAGTCCCTA..............................................................................................................................................2360.170.17---------------0.17----------------------------------------------------------------------------------------------------
................TTTGGTGGAAGAAGCTCGGG.......................................................................................................................................................2060.170.17-------0.17------------------------------------------------------------------------------------------------------------
..................TGGTGGAAGAAGCTCGGGC......................................................................................................................................................1960.170.17---------0.17----------------------------------------------------------------------------------------------------------
......................GGAAGAAGCTCGGGCAGTCCCT...............................................................................................................................................2260.170.17---------------------------------------------------------------0.17----------------------------------------------------
.....................TGGAAGAAGCTCGGGCAGTCCCTATGGT..........................................................................................................................................2860.170.17-----------------------------------------------------------------------------------0.17--------------------------------
..............GTTTTGGTGGAAGAAGCTCGGG.......................................................................................................................................................2260.170.17-------0.17------------------------------------------------------------------------------------------------------------
...............TTTTGGTGGAAGAAGCTCG.........................................................................................................................................................1960.170.17---------------0.17----------------------------------------------------------------------------------------------------
...................GGTGGAAGAAGCTCGGGCAGTCC.................................................................................................................................................2360.170.17-----------------------------0.17--------------------------------------------------------------------------------------
................TTTGGTGGAAGAAGCTCGG........................................................................................................................................................1960.170.17--------0.17-----------------------------------------------------------------------------------------------------------
....................GTGGAAGAAGCTCGGGCAGT...................................................................................................................................................2060.170.17--------0.17-----------------------------------------------------------------------------------------------------------
.......................GAAGAAGCTCGGGCAGTCT.................................................................................................................................................1960.170.33--------------0.17-----------------------------------------------------------------------------------------------------
.........................AGAAGCTCGGGCAGTCCCTA..............................................................................................................................................2060.170.17--------0.17-----------------------------------------------------------------------------------------------------------
.........................AGAAGCTCGGGCAGTCCCT...............................................................................................................................................1960.170.17-------0.17------------------------------------------------------------------------------------------------------------
..............................................................................................................................................TATGGATCTGGTGGTGGA...........................1870.140.14---------------------------------------------------------------------------------------------0.14----------------------
................................................................................................................................................TGGATCTGGTGGTGGAAGTGGTGGATATGGTAGCA........3570.140.14-----------------------------0.14--------------------------------------------------------------------------------------
...............................................................................................................................................ATGGATCTGGTGGTGGAAGTGGTGGATATGG.............3170.140.14---0.14----------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................GTGGAAGTGGTGGATATGGTAGCAGAAGGGTCT3370.140.14-----------------------------0.14--------------------------------------------------------------------------------------
...............................................................................................................................................ATGGATCTGGTGGTGGAAGTGGCG....................2470.140.290.14-------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................GATCTGGTGGTGGAAGTGG......................1970.140.14-----------------------------0.14--------------------------------------------------------------------------------------
..................................................................................................................................................GATCTGGTGGTGGAAGTGGTGGAT.................2470.140.14----------------------------------------------------------------------------------------------0.14---------------------
................................................................................................................................................TGGATCTGGTGGTGGAAGTGGTGGA..................2570.140.14-----------------------------------------------------------------------------------------0.14--------------------------
...................................................................................................................................................ATCTGGTGGTGGAAGTGGTGGATATGGTAG..........3070.140.14--------------------------------------------------------------------0.14-----------------------------------------------
.......................................................................................................................................................GGTGGTGGAAGTGGTGGATATGGTAGCAGAAGGTT.3570.140.14-------------------------------------0.14------------------------------------------------------------------------------
...................................................................................................................................................ATCTGGTGGTGGAAGTGGTGGATATGGT............2870.140.14-------------------------------0.14------------------------------------------------------------------------------------
................................................................................................................................................TGGATCTGGTGGTGGAAGTGGTGGATA................2770.140.140.14-------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................TTATGGATCTGGTGGTGGAAGTGGT.....................2570.140.14-----------------------------------------------------------------------------------------------0.14--------------------
.................................................................................................................................................GGATCTGGTGGTGGAAGT........................1870.140.14-------------------------------------------------------------------------------------0.14------------------------------
...............................................................................................................................................ATGGATCTGGTGGTGGAAGTGGGGGG..................2670.140.290.14-------------------------------------------------------------------------------------------------------------------
................................................................................................................................................TGGATCTGGTGGTGGAAGTGG......................2170.140.140.14-------------------------------------------------------------------------------------------------------------------
................................................................................................................................................TGGATCTGGTGGTGGAAGTGGTGGAT.................2670.140.14---0.14----------------------------------------------------------------------------------------------------------------
................................................................................................................................................TGGATCTGGTGGTGGAAGTGGTGGACATG..............2970.140.14---0.14----------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................GTGGAAGTGGTGGATATGGTAGCAGAAGG...2970.140.14------------------------------------------------------------0.14-------------------------------------------------------
..............................................................................................................................................TATGGATCTGGTGGTGGAAGTG.......................2270.140.14----------------------------------------------------------------------------------------0.14---------------------------
..............................CTCGGGCAGTCCCTATGGTGGGGG.....................................................................................................................................2470.140.140.14-------------------------------------------------------------------------------------------------------------------
..............................CTCGGGCAGTCCCTATGGTGG........................................................................................................................................2170.140.14------------------------------------------------------------0.14-------------------------------------------------------
.................................................................................................................................................GGATCTGGTGGTGGAAGTGG......................2070.140.14--------------------------------------------------------------------------0.14-----------------------------------------
....................................................................................................................................................TCTGGTGGTGGAAGTGGTG....................1980.120.12------------------------------------------------------------------------------------------------------0.12-------------
......................................................................................................................................................TGGTGGTGGAAGTGGTGGATAT...............2280.120.12-------0.12------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................GGTGGTGGAAGTGGTGGATATGG.............2380.120.12--------------0.12-----------------------------------------------------------------------------------------------------
..........................................................................................................................................................GGTGGAAGTGGTGGATATGGT............2180.120.12-----------------------------------------------------------------0.12--------------------------------------------------
..........................................................................................................................................................GGTGGAAGTGGTGGATATGGTAGCAGA......2780.120.12--------------------------------------------------------------------------------------------------0.12-----------------
...................................................................................................................................................ATCTGGTGGTGGAAGTGG......................1880.120.12---------------------------------------------------------------------------------------------------------0.12----------
....................................................................................................................................................TCTGGTGGTGGAAGTGGTGGA..................2180.120.12-------------------------------------------------------------------------------------------------------------0.12------
......AGGGGGCAGTTTTGGTGGAAGA...............................................................................................................................................................2280.120.12-------------------------------------------------------------------0.12------------------------------------------------
...........................................................................................................................................................GTGGAAGTGGTGGATATGGTAGCAG.......2580.120.12-----------------------------0.12--------------------------------------------------------------------------------------
...........................................................................................................................................................GTGGAAGTGGTGGATATGGTA...........2180.120.12---------------------------------------------------------------------------0.12----------------------------------------
............................................................................................................................................GTTATGGATCTGGTGGTAG............................1980.120.12-------0.12------------------------------------------------------------------------------------------------------------
......................................................................................................................................................TGGTGGTGGAAGTGGTGGA..................1980.120.12--------------0.12-----------------------------------------------------------------------------------------------------
.....................................................................................................................................................CTGGTGGTGGAAGTGGTGGATATGGTAGCAG.......3180.120.12-----------------------------------------------------------------------------------------------------------0.12--------
................................................................................................................................................TGGATCTGGTGGTGGA...........................1680.120.12----------------------------------------------------------------0.12---------------------------------------------------
.......................................................................................................................................................GGTGGTGGAAGTGGTGGA..................1880.120.12------------------------------------------------------------------------------------------------------------0.12-------
.......................................................................................................................................................GGTGGTGGAAGTGGTGGAT.................1980.120.12----------------------------------------------------------------------------0.12---------------------------------------
................................................................................................................................................TGGATCTGGTGGTGGATT.........................1880.120.12------------------------------0.12-------------------------------------------------------------------------------------
......................................................................................................................................................TGGTGGTGGAAGTGGTGGATGTG..............2380.120.12-------------------------------------------------------------------------------------------------0.12------------------
............................................................................................................................................GTTATGGATCTGGTGGT..............................1780.120.12-----------------------------0.12--------------------------------------------------------------------------------------
................................................................................................................................................TGGATCTGGTGGTGGACG.........................1880.120.12-------0.12------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................GGTGGTGGAAGTGGTGGATATG..............2280.120.12-------0.12------------------------------------------------------------------------------------------------------------
......................................................................................................................................................TGGTGGTGGAAGTGGTGGAT.................2080.120.12---------------------------------------------------------0.12----------------------------------------------------------
............................................................................................................................................................TGGAAGTGGTGGATATGGTAGCA........2390.110.11----------------------------------------------------------------------------0.11---------------------------------------
............................................................................................................................................................TGGAAGTGGTGGATATGGTAGCAGAAG....2790.110.11--------------------------------------------------------------------------------------------------------------0.11-----
.........GGGCAGTTTTGGTGGAAGAA..............................................................................................................................................................2090.110.11--------------0.11-----------------------------------------------------------------------------------------------------
...................................................................................................................................................................GGTGGATATGGTAGCAGAAGGTTT2490.110.11--------------------------------------0.11-----------------------------------------------------------------------------
............................................................................................................................................................TGGAAGTGGTGGATATGGT............1990.110.11-------------------------------------------------------------------------------------------------------------------0.11
.....................................................................................................................................................................TGGATATGGTAGCAGAAGGTTC2290.110.11----------------------------------------------------------------------------------------------------------------0.11---
.....................TGGAAGAAGCTCGGG.......................................................................................................................................................1590.110.11-----------------------------------0.11--------------------------------------------------------------------------------
....................................................................................................................................................................GTGGATATGGTAGCAGAAGGT..2190.110.11------------------------------------------------------------------------0.11-------------------------------------------
................................................................................................................................................................AGTGGTGGATATGGTAGCAGAAGGT..2590.110.11------------------------------------------------------------------------------------------------------------------0.11-
.........................................................................................................................................................TGGTGGAAGTGGTGGATA................1890.110.11-------0.11------------------------------------------------------------------------------------------------------------
........................................................................................................................................................GTGGTGGAAGTGGTGGATA................1990.110.11--------0.11-----------------------------------------------------------------------------------------------------------
..............................................................................................................................................................GAAGTGGTGGATATGGTAGC.........2090.110.11------------------------------0.11-------------------------------------------------------------------------------------
............................................................................................................................................................TGGAAGTGGTGGATATGGTAGCAA.......2490.110.11-------------0.11------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................TGGATATGGTAGCAGAAGG...1990.110.11-------------0.11------------------------------------------------------------------------------------------------------
...................................................................................................................................................................GGTGGATATGGTAGCAGAAGGTT.2390.110.11---------------------------------0.11----------------------------------------------------------------------------------
........................................................................................................................................GGTGGTTATGGATCTGGTG................................1990.110.11-------------0.11------------------------------------------------------------------------------------------------------

Antisense strand
CATGAAAGGGGGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTGGTAAGTACTTTCTTAAATCAATTCTTTAGAGCCTTTTTAATTTAAAAAATGTGCATACTTCTTTTAAAATACTATGTATATTTTCAGGTGGTTATGGATCTGGTGGTGGAAGTGGTGGATATGGTAGCAGAAGGTTC
...................................................((((......))))..............................((((((((((((...............)))))))))))).....................................................
..................................................51....................................................................................137................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		GSM359178(GSM359178)
hela_nucl_t. (hela)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		GSM359175(GSM359175)
hela_5_pct. (hela)		GSM359180(GSM359180)
hela_phil_smrna_cyto. (hela)		TAX577589(Rovira)
total RNA. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR343334GSM359173(GSM359173)
hela_10_1. (hela)		GSM359174(GSM359174)
hela_5_1. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR189786TAX577744(Rovira)
total RNA. (breast)		GSM359181(GSM359181)
hela_phil_smrna_nuc. (hela)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189782SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR029124(GSM416753)
HeLa. (hela)		TAX577580(Rovira)
total RNA. (breast)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR029128(GSM416757)
H520. (cell line)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191560(GSM715670)
77genomic small RNA (size selected RNA from t. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532876(GSM532876)
G547T. (cervix)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR038859(GSM458542)
MM386. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.......................................................TACTTTCTTAAATCAGATC................................................................................................................. 1932.000.00-32.00------------------------------------------------------------------------------------------------------------------
.................................................................................................AATGTGCATACTTCTTTGGTT..................................................................... 215.000.00-----------------------2.00--------------1.00---1.00--------1.00----------------------------------------------------------------
................................................................................................................................................................AGTGGTGGATATGGTAAAG........ 192.000.00-------------------1.00------------------------------1.00-----------------------------------------------------------------
.................................................................................................AATGTGCATACTTCTTGGTT...................................................................... 201.000.00-------------------------1.00------------------------------------------------------------------------------------------
...................................CTTACCACCATAGGGACTGC.................................................................................................................................... 2011.001.00--------------------------------------------1.00-----------------------------------------------------------------------
.........................................................................................................................................................TGGTGGAAGTGGTGGAAA................ 181.000.00------------1.00-------------------------------------------------------------------------------------------------------
..............................................................TTAAATCAATTCTTTACTGA......................................................................................................... 201.000.00----------------1.00---------------------------------------------------------------------------------------------------
.................................................................................................AATGTGCATACTTCTTTGGAT..................................................................... 211.000.00------------1.00-------------------------------------------------------------------------------------------------------
.................................................................................................AATGTGCATACTTCTTTGGCT..................................................................... 211.000.00-------------------------1.00------------------------------------------------------------------------------------------
................................................................................................AAATGTGCATACTTCTGTTA....................................................................... 201.000.00------------1.00-------------------------------------------------------------------------------------------------------
.................................................................................................AATGTGCATACTTCTGGTT....................................................................... 191.000.00----------------------------------------1.00---------------------------------------------------------------------------
.................................................................................................AATGTGCATACTTCTTTTGGT..................................................................... 211.000.00------------------------------------------------------1.00-------------------------------------------------------------
.................................................................................................AATGTGCATACTTCTTTGGT...................................................................... 201.000.00---------------------------------------------1.00----------------------------------------------------------------------
.........................AGAAGCTCGGGCAGTGAG................................................................................................................................................ 181.000.00------------------------------------------------1.00-------------------------------------------------------------------
........................................................................................................................................................GTGGTGGAAGTGGTGGTCTG............... 201.000.00-------------------1.00------------------------------------------------------------------------------------------------
.......................................................TACTTTCTTAAATCAG.................................................................................................................... 161.000.00-----------------------------------------------1.00--------------------------------------------------------------------