ID: uc002ulb.1_intron_1_0_chr2_178080390_f
GENE: HNRNPA3(2)
chr2:178080340-178080527+


(2)
AGO2.ip 		(7)
B-CELL 		(2)
BRAIN 		(7)
BREAST 		(27)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(3)
HELA 		(8)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(16)
SKIN 		(1)
TESTES 		(2)
XRN.ip

Sense strand
ATAGTTTACGAGAACATTTTGAGAAATGGGGCACACTCACAGATTGTGTGGTAAGTTACTAAGAGAACAGAAGGGTTCTAAGGGGTGTAGAGAACCGGTGGAGGTGTTTTCAACGTTATAAAACTTTTTATTTTGTAGGTAATGAGAGACCCCCAAACAAAACGTTCCAGGGGCTTTGGTTTTGTGAC
........................................................((((...(((((......)))))....))))..(((((((......)))..)))).(((..(((((....)))))..)))....................................................
..................................................51.....................................................................................138................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR191523(GSM715633)
107genomic small RNA (size selected RNA from . (breast)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577742(Rovira)
total RNA. (breast)		SRR040038(GSM532923)
G531N. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577744(Rovira)
total RNA. (breast)		SRR038853(GSM458536)
MELB. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		TAX577738(Rovira)
total RNA. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
..................................................................................................................GTTATAAAACTTTTTATTTTGTAG..................................................2417.007.00-3.00----------2.00--------------------1.00-------1.00------------------------------------
.........................................................................................GAGAACCGGTGGAGGTGTTTT..............................................................................2116.006.00--6.00---------------------------------------------------------------------------
..................................................GTAAGTTACTAAGAGAACAGAAGG..................................................................................................................2416.006.00-4.00--1.00------------------------1.00------------------------------------------------
..................................................GTAAGTTACTAAGAGAACAGAAGGGTTCTAAGGGGTGTAGAGAACCGGTGGAGGTGTTTTCAACGTTATAAAACTTTTTATTTTGTAG..................................................8815.005.00-----4.00--------------------1.00---------------------------------------------------
..................................................GTAAGTTACTAAGAGAACAGAAGGG.................................................................................................................2515.005.00-1.00--3.00----------------------------------1.00--------------------------------------
............................................................................................................TTCAACGTTATAAAACTTTTT...........................................................2113.003.00--------2.00-------------------------1.00-------------------------------------------
........................................................................................................TGTTTTCAACGTTATAAAACTTTTTATTTTGTAGA.................................................353.000.00-------3.00----------------------------------------------------------------------
......TACGAGAACATTTTGAGAAATGGGGC............................................................................................................................................................2623.003.00---3.00--------------------------------------------------------------------------
....................................................................................................................................................................TTCCAGGGGCTTTGGTTTTGCGAC242.000.002.00-----------------------------------------------------------------------------
.................................................................................................................................................................ACGTTCCAGGGGCTTTGTGAC......212.000.001.00--------------------1.00--------------------------------------------------------
..................................................GTAAGTTACTAAGAGAACAGAAGGGTTCTAAGGGGTGTAGAGAACCGGTGGAGGTGTTTTCAA...........................................................................6312.002.00----------------2.00-------------------------------------------------------------
..............................................................................TAAGGGGTGTAGAGAACCGG..........................................................................................2012.002.00-----------2.00------------------------------------------------------------------
..............................................................................................................................TTTATTTTGTAGGTAATGAGA.........................................2111.001.00----------------------------1.00-------------------------------------------------
.............................................................................................................TCAACGTTATAAAACTTTTTATTTTGTAG..................................................2911.001.00-------------1.00----------------------------------------------------------------
..............................................................................................CCGGTGGAGGTGTTTTCAAC..........................................................................2011.001.00----------------------1.00-------------------------------------------------------
.................................................................................................................CGTTATAAAACTTTTTATTTTGTAG..................................................2511.001.00--------------------------------1.00---------------------------------------------
.......................................CAGATTGTGTGGTAAGTTACTAA..............................................................................................................................2311.001.00--------------------------------------------1.00---------------------------------
..............................................................................TAAGGGGTGTAGAGAACCGGTG........................................................................................2211.001.00---------------1.00--------------------------------------------------------------
..................................................GTAAGTTACTAAGAGAACAGAAGGA.................................................................................................................2511.006.00-------------------------------------------1.00----------------------------------
......................................ACAGATTGTGTGGTAATGCG..................................................................................................................................201.000.00-----------------1.00------------------------------------------------------------
.....TTACGAGAACATTTTGAGAAATGGGC.............................................................................................................................................................261.000.00---1.00--------------------------------------------------------------------------
................................................................................AGGGGTGTAGAGAACCGGTGGAGGTG..................................................................................2611.001.001.00-----------------------------------------------------------------------------
...............................................................................AAGGGGTGTAGAGAAAAA...........................................................................................181.000.00-------------------1.00----------------------------------------------------------
......................................................................................GTAGAGAACCGGTGGAGGTGTTTTC.............................................................................2511.001.00------------------------------1.00-----------------------------------------------
................................................................................................................................................................AACGTTCCAGGGGCTTTGGC........201.000.001.00-----------------------------------------------------------------------------
................................................................................................................................................................AACGTTCCAGGGGCTTTGGTTTTGCGAC281.000.001.00-----------------------------------------------------------------------------
....................................................................................................................................................................TTCCAGGGGCTTTGGTTTCGTG..221.000.001.00-----------------------------------------------------------------------------
..................................................................................GGGTGTAGAGAACCGGTGG.......................................................................................1911.001.00---------------1.00--------------------------------------------------------------
...............................................................................................................................................................AAACGTTCCAGGGGCTTTGGTTTCG....251.000.001.00-----------------------------------------------------------------------------
................................................................................................................ACGTTATAAAACTTTTTATTTTGTAG..................................................2611.001.00------------------1.00-----------------------------------------------------------
..........................................................................GTTCTAAGGGGTGTAGAGAACCGGTGGAGG....................................................................................3011.001.00--------------------------------------1.00---------------------------------------
.....................................................................GAAGGGTTCTAAGGGGTGTAGA.................................................................................................2211.001.00-1.00----------------------------------------------------------------------------
...........................................TTGTGTGGTAAGTTACTAAGAGAACAGAAGGG.................................................................................................................3211.001.00--------------------1.00---------------------------------------------------------
..................................................GTAAGTTACTAAGAGAACAGAAGGGTTC..............................................................................................................2811.001.00----1.00-------------------------------------------------------------------------
...................................................................................................................................................................GTTCCAGGGGCTTTGGTTTTGTGTTTA271.000.00-----------------------1.00------------------------------------------------------
..................................................GTAAGTTACTAAGAGAACAGAAGGGTTATC............................................................................................................301.000.00----------------------------------------1.00-------------------------------------
.........................................................................GGTTCTAAGGGGTGTAGAGAACCGGTA........................................................................................271.000.00--------------1.00---------------------------------------------------------------
..............................................................................TAAGGGGTGTAGAGAACCGGTGGAGGT...................................................................................2711.001.00-----------------------------------1.00------------------------------------------
................................................................................AGGGGTGTAGAGAACCGGTGT.......................................................................................211.000.00----------1.00-------------------------------------------------------------------
.............................................................................................................TCAACGTTATAAAACTTTTTATTTTTTAT..................................................291.000.00-------------1.00----------------------------------------------------------------
.................................................................AACAGAAGGGTTCTAAGGGGTGTAGAG................................................................................................2711.001.00---------------------------1.00--------------------------------------------------
................................................................................AGGGGTGTAGAGAACCGG..........................................................................................1811.001.00-------------------------------1.00----------------------------------------------
........................................AGATTGTGTGGTAAGTTACTAAGAG...........................................................................................................................2511.001.00------1.00-----------------------------------------------------------------------
.................................................................................GGGGTGTAGAGAACCAAA.........................................................................................181.000.00--1.00---------------------------------------------------------------------------
.....TTACGAGAACATTTTGAGAAATGGGGC............................................................................................................................................................2721.001.00---1.00--------------------------------------------------------------------------
.........................................GATTGTGTGGTAAGTTTT.................................................................................................................................181.000.00------1.00-----------------------------------------------------------------------
............................................................................TCTAAGGGGTGTAGAGAACCGGT.........................................................................................2311.001.00------------------------1.00-----------------------------------------------------
..................................................................................GGGTGTAGAGAACCGGTGGAGGTGTTT...............................................................................2711.001.00--------------1.00---------------------------------------------------------------
......TACGAGAACATTTTGAGAAATGGC..............................................................................................................................................................241.000.00---1.00--------------------------------------------------------------------------
...............................................................................AAGGGGTGTAGAGAACCGGTGG.......................................................................................2211.001.00---------1.00--------------------------------------------------------------------
............................................................................................................TTCAACGTTATAAAACTTTTTATTTTGTAG..................................................3011.001.00------------------------------------------1.00-----------------------------------
................................................................................................................................................................AACGTTCCAGGGGCTTTGGTTTT.....2340.750.75---0.25-----0.25---------------------------------------0.25----------------------------
.................................................................................................................................................................ACGTTCCAGGGGCTTTGGT........1950.600.60------------------------------------------------------0.400.20----------------------
..............................................................................................................................................................AAAACGTTCCAGGGGCTTTGGTTT......2440.500.50------0.50-----------------------------------------------------------------------
..AGTTTACGAGAACATTTTG.......................................................................................................................................................................1920.500.50-----------------0.50------------------------------------------------------------
......TACGAGAACATTTTGAGAAATGGGGCAC..........................................................................................................................................................2820.500.50------------------------------------------------0.50-----------------------------
....TTTACGAGAACATTTTGAG.....................................................................................................................................................................1920.500.50------------------0.50-----------------------------------------------------------
......TACGAGAACATTTTGAGAAA..................................................................................................................................................................2020.500.50-----------------------------------------------0.50------------------------------
........CGAGAACATTTTGAGAAAT.................................................................................................................................................................1920.500.50-------------------0.50----------------------------------------------------------
...............................................................................................................................................................AAACGTTCCAGGGGCTTTGGTTTTGCGAC2940.500.500.50-----------------------------------------------------------------------------
..AGTTTACGAGAACATTTTGAGAAATGGGGCACAC........................................................................................................................................................3420.500.50----------------------------------------------------0.50-------------------------
......TACGAGAACATTTTGAGAAATGGGG.............................................................................................................................................................2520.500.50--------0.50---------------------------------------------------------------------
...............................................................................................................................................................AAACGTTCCAGGGGCTTTGGTTTTG....2540.500.50----------0.50-------------------------------------------------------------------
........................................................................................AGAGAACCGGTGGAGGT...................................................................................1720.500.50----------------------------------------------0.50-------------------------------
..................TTGAGAAATGGGGCACACT.......................................................................................................................................................1970.430.43---------0.29------------------------------------------------------------0.14-------
............................................................................................................................................AATGAGAGACCCCCAAACAAAACGTTCCAGG.................3150.400.40--------------------0.40---------------------------------------------------------
..............................................................................................................................................................AAAACGTTCCAGGGGCTTT...........1950.400.40-------------------------------------------------0.20---0.20------------------------
.................................................................................................................................................................ACGTTCCAGGGGCTTTGGTTTTGCGAC2750.400.200.40-----------------------------------------------------------------------------
..................................................................................................................................................................CGTTCCAGGGGCTTTGGTT.......1950.400.40----------0.20------0.20------------------------------------------------------------
.......................................................................................................................................................................CAGGGGCTTTGGTTTTGTG..1990.330.33-----------------------------------------------------0.22-----------------------0.11
........................................................................................................................................................CCAAACAAAACGTTCCAGGGGC..............2260.330.33-----------------------------------------------------------------0.170.17-----------
....................................................................................................................................................ACCCCCAAACAAAACGTTCCAGGGGCTTTGGTT.......3340.250.25---------------------------------------------------------0.25--------------------
................................................................................................................................................................AACGTTCCAGGGGCTTTGGTT.......2140.250.25----------0.25-------------------------------------------------------------------
............................................................................................................................................................ACAAAACGTTCCAGGGGCTTTGG.........2340.250.250.25-----------------------------------------------------------------------------
............................................................................................................................................................ACAAAACGTTCCAGGGGCTTTGGCT.......2540.250.250.25-----------------------------------------------------------------------------
................................................................................................................................................................AACGTTCCAGGGGCTTTGGTTT......2240.250.25---------0.25--------------------------------------------------------------------
...............................................................................................................................................................AAACGTTCCAGGGGCTTTGGTT.......2240.250.25---------0.25--------------------------------------------------------------------
...............................................................................................................................................................AAACGTTCCAGGGGCTTTGGTTTT.....2440.250.25------0.25-----------------------------------------------------------------------
............................................................................................................................................................ACAAAACGTTCCAGGGGCTTTGGTT.......2540.250.25--------------------------------------------------------0.25---------------------
................................................................................................................................................................AACGTTCCAGGGGCTTTGGTTTTGTGAC2840.250.250.25-----------------------------------------------------------------------------
..........AGAACATTTTGAGAAATGGGGCACACTC......................................................................................................................................................2850.200.200.20-----------------------------------------------------------------------------
.........GAGAACATTTTGAGAAATGGGGCACACTC......................................................................................................................................................2950.200.20------------------------------------------------------------0.20-----------------
.......................................................................................................................................................CCCAAACAAAACGTTCCAGGG................2150.200.20-------------------------------------------------------------0.20----------------
.................................................................................................................................................................ACGTTCCAGGGGCTTTGGTTTTG....2350.200.20-----------------------------------------------------------0.20------------------
................................................................................................................................................AGAGACCCCCAAACAAAACG........................2050.200.20------0.20-----------------------------------------------------------------------
.................................................................................................................................................................ACGTTCCAGGGGCTTTGGTTT......2150.200.20--------------------------------------------------------------0.20---------------
.................................................................................................................................................................ACGTTCCAGGGGCTTTGGTTTTGTG..2550.200.20---------------------0.20--------------------------------------------------------
................................................................................................................................................AGAGACCCCCAAACAAAACGTTC.....................2350.200.20----------------------------------------------------------0.20-------------------
.........................................................................................................................................................CAAACAAAACGTTCCAGGGGCTTTG..........2550.200.20---------------------------------------------------------------0.20--------------
..........................................................................................................................................GTAATGAGAGACCCCCAAACAAAACGTTCCAG..................3250.200.20------------------------0.20-----------------------------------------------------
..................................................................................................................................................................CGTTCCAGGGGCTTTGGTTTTGTGA.2550.200.20----------0.20-------------------------------------------------------------------
...........................................................................................................................................................AACAAAACGTTCCAGGGGC..............1960.170.17--------------------------------------------------------------------0.17---------
....................................................................................................................................................................TTCCAGGGGCTTTGGTTTTGTG..2260.170.17---------------------0.17--------------------------------------------------------
....................................................................................................................................................................TTCCAGGGGCTTTGGTTTTGTGAC2460.170.17---------0.17--------------------------------------------------------------------
..........AGAACATTTTGAGAAATGGGGCA...........................................................................................................................................................2360.170.17---------0.17--------------------------------------------------------------------
............................................................................................................................................................ACAAAACGTTCCAGGG................1660.170.17---------------------------------------------0.17--------------------------------
...........GAACATTTTGAGAAATGGGGC............................................................................................................................................................2160.170.17----------------------------------------------------------------0.17-------------
...............................................................................................................................................................AAACGTTCCAGGGGCTTT...........1860.170.17----------------------0.17-------------------------------------------------------
...................................................................................................................................................................GTTCCAGGGGCTTTGGTTTTGT...2260.170.17---------------------------------------------------------------------0.17--------
..........AGAACATTTTGAGAAATGGGGCAC..........................................................................................................................................................2460.170.170.17-----------------------------------------------------------------------------
.......................................................................................................................................................CCCAAACAAAACGTTCC....................1760.170.17-------------------------------------------------------------------0.17----------
.........................ATGGGGCACACTCACAGATTGTGTGG.........................................................................................................................................2660.170.170.17-----------------------------------------------------------------------------
................TTTTGAGAAATGGGGCACAC........................................................................................................................................................2070.140.14------0.14-----------------------------------------------------------------------
...................TGAGAAATGGGGCACACTCACA...................................................................................................................................................2270.140.14------0.14-----------------------------------------------------------------------
.......................AAATGGGGCACACTCACA...................................................................................................................................................1870.140.14-----------------0.14------------------------------------------------------------
.......................AAATGGGGCACACTCACAGATT...............................................................................................................................................2270.140.14------------------------------------------------------------------------0.14-----
..................TTGAGAAATGGGGCACACTCA.....................................................................................................................................................2170.140.14-------------------------------------------------------0.14----------------------
.....................AGAAATGGGGCACACTCACAG..................................................................................................................................................2170.140.14-----------------------------------------------------------------------0.14------
..................TTGAGAAATGGGGCACACTCACAG..................................................................................................................................................2470.140.14-------------------------0.14----------------------------------------------------
.....................AGAAATGGGGCACACTCACA...................................................................................................................................................2070.140.14-----------------------------------------------0.14------------------------------
.....................AGAAATGGGGCACACTCACAGG.................................................................................................................................................2270.140.140.14-----------------------------------------------------------------------------
................TTTTGAGAAATGGGGCACACCCAC....................................................................................................................................................2470.140.140.14-----------------------------------------------------------------------------
.............ACATTTTGAGAAATGGGGCACACTCACAGAT................................................................................................................................................3170.140.140.14-----------------------------------------------------------------------------
.......................AAATGGGGCACACTCAC....................................................................................................................................................1770.140.14----------------------------------------------0.14-------------------------------
.......................AAATGGGGCACACTCACAG..................................................................................................................................................1970.140.14-----------------------0.14------------------------------------------------------
.................TTTGAGAAATGGGGCACAC........................................................................................................................................................1970.140.14-------------------------------------------------0.14----------------------------
........................................................................................................................................................................AGGGGCTTTGGTTTTGTGAC2080.120.12------0.12-----------------------------------------------------------------------
.....................................................................................................................................................................TCCAGGGGCTTTGGTTTTGTGA.2280.120.12--------------------------------------------------------------------------0.12---
......................................................................................................................................................................CCAGGGGCTTTGGTTTTGTG..2080.120.12---------------------------------------------------------------------------0.12--
.......................................................................................................................................................................CAGGGGCTTTGGTTTTGTGAC2180.120.12------0.12-----------------------------------------------------------------------
.........................................................................................................................................................................GGGGCTTTGGTTTTGTGA.1880.120.12-0.12----------------------------------------------------------------------------
.............ACATTTTGAGAAATGGGGC............................................................................................................................................................1980.120.12------------------------------------------------0.12-----------------------------
........................................................................................................................................................................AGGGGCTTTGGTTTTGTGA.1980.120.12-----------------------0.12------------------------------------------------------
.......................................................................................................................................................................CAGGGGCTTTGGTTTTGTGA.2080.120.12-------------------------------------------------------------------------0.12----
...................TGAGAAATGGGGCACAC........................................................................................................................................................1790.110.11----------------------0.11-------------------------------------------------------
...............................................................................................................................................................AAACGTTCCAGGGGC..............1590.110.110.11-----------------------------------------------------------------------------
.......................AAATGGGGCACACTC......................................................................................................................................................1590.110.11----------------------------------------------------------------------------0.11-

Antisense strand
ATAGTTTACGAGAACATTTTGAGAAATGGGGCACACTCACAGATTGTGTGGTAAGTTACTAAGAGAACAGAAGGGTTCTAAGGGGTGTAGAGAACCGGTGGAGGTGTTTTCAACGTTATAAAACTTTTTATTTTGTAGGTAATGAGAGACCCCCAAACAAAACGTTCCAGGGGCTTTGGTTTTGTGAC
........................................................((((...(((((......)))))....))))..(((((((......)))..)))).(((..(((((....)))))..)))....................................................
..................................................51.....................................................................................138................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR191523(GSM715633)
107genomic small RNA (size selected RNA from . (breast)		SRR363676(GSM830253)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		TAX577742(Rovira)
total RNA. (breast)		SRR040038(GSM532923)
G531N. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		TAX577744(Rovira)
total RNA. (breast)		SRR038853(GSM458536)
MELB. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		TAX577738(Rovira)
total RNA. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
............................................................................................................................TTTTTATTTTGTAGGTAAACAG.......................................... 221.000.00-------------------------1.00----------------------------------------------------
..................................................................................................................................................AGACCCCCAAACAAAAGTC....................... 191.000.00------------------------------------1.00-----------------------------------------
...............................................................................................CGGTGGAGGTGTTTTAA............................................................................ 171.000.00-------------------------------------1.00----------------------------------------