ID: uc002uhh.2_intron_16_0_chr2_172749769_r.3p
GENE: SLC25A12(1)
chr2:172749719-172749968-


(2)
BRAIN
(1)
BREAST
(7)
CELL-LINE
(1)
CERVIX
(5)
HEART
(1)
OTHER
(2)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
TATTCGCACCTGTTTTTCTGCCCTCTAGTCACAGTTATCCAGTTTGACAGTTCTTATCAGCAATTAGGGCTTTTAGTTTGTTTTAAACTAAATGATAAAAGATAGGAGCATTGATTGTTAGCCATGTGACCTCTAATCTGAAGAGATTGTGTGGTCTCTAGTGAAGCATTAACTGGCTTTTTTTTCTTTTTTGCTTACAGGTGCAGACAACTAAGCGAGGGGATCCTCATGAGTTAAGAAACATATTTCT
.........................................................................................................................................(((.(((((((....)))))))...(((((........))))).................)))..................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189785SRR038859(GSM458542)
MM386. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
.................................................................................................................................................................................TTTTTTTTCTTTTTTGCTTGGCG..................................................2346.000.0040.005.00--1.00-----------------
.................................................................................................................................................................................TTTTTTTTCTTTTTTGCTTGGC...................................................224.000.003.001.00--------------------
..........................................................................................................................................................................AACTGGCTTTTTTTTCTTTTTCCC........................................................244.000.001.003.00--------------------
................................................................................................................................................................................CTTTTTTTTCTTTTTTGCTTGGCG..................................................244.000.002.002.00--------------------
...........................................................................................................................................................................ACTGGCTTTTTTTTCTTTTAAAC........................................................233.000.00-3.00--------------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTTTTTTC.......................................................223.000.001.002.00--------------------
.........................................................................................................................................CTGAAGAGATTGTGTAGGG..............................................................................................193.000.00---3.00------------------
...........................................................................................................................................................................ACTGGCTTTTTTTTCTTTTTTTTAA......................................................252.000.00-2.00--------------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTTTTTTGT......................................................232.000.002.00---------------------
.................................................................................................................................................................................TTTTTTTTCTTTTTTGCTTACGGAG................................................252.000.002.00---------------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTTTTTTGG......................................................232.000.002.00---------------------
..........................................................................................................................................................................AACTGGCTTTTTTTTCTTTTTTTC........................................................242.000.00-2.00--------------------
................................................................................................................................................GATTGTGTGGTCTCTAGTGAAGCATTAACT............................................................................3011.001.00---------1.00------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTTTTTCTG......................................................231.000.00-1.00--------------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTTTTTTGC......................................................231.000.00-1.00--------------------
....................................................................................................................................................................................TTTTTCTTTTTTGCTTCTCC..................................................201.000.00-1.00--------------------
...........................................................................................................................................................................ACTGGCTTTTTTTTCTTTTTCCT........................................................231.000.00-1.00--------------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTGGTC.........................................................201.000.001.00---------------------
.....................................................................................................................................................................................................................AGCGAGGGGATCCTCATGAGTCAAG............251.000.001.00---------------------
............................................................................................................................................................................CTGGCTTTTTTTTCTTTTTTTCTG......................................................241.000.00-1.00--------------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTGGG..........................................................191.000.001.00---------------------
.................................GTTATCCAGTTTGACGATC......................................................................................................................................................................................................191.000.00------1.00---------------
.................................................................................................................................................................................TTTTTTTTCTTTTTTGCTCGGC...................................................221.000.001.00---------------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTTTTTGG.......................................................221.000.00-1.00--------------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTTTGG.........................................................201.000.001.00---------------------
...........................................................................................................................................................................ACTGGCTTTTTTTTCTTTTGA..........................................................211.000.00-1.00--------------------
.................................................................................................................................................................................TTTTTTTTCTTTTTTGCTTATCTC.................................................241.000.00-1.00--------------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTTTCGG........................................................211.000.00-1.00--------------------
..........................................................................................................................................................................AACTGGCTTTTTTTTCTTTTTTTTC.......................................................251.000.001.00---------------------
............................................................................................................................................................................................................AGACAACTAAGCGAGGGGA...........................1911.001.00--------1.00-------------
............................................................................................................................................................................CTGGCTTTTTTTTCTTTTCTAG........................................................221.000.00-1.00--------------------
...........................................................................................................................................................................ACTGGCTTTTTTTTCTTTTTTTTG.......................................................241.000.00-1.00--------------------
........................................................................................................................................TCTGAAGAGATTGTGCCT................................................................................................181.000.00-------------1.00--------
...........................................................................................................................................................................ACTGGCTTTTTTTTCTTTTTA..........................................................211.000.00-1.00--------------------
..........................................................................................................................................................................AACTGGCTTTTTTTTCTTTTTTCTAG......................................................261.000.001.00---------------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTTTGGAG.......................................................221.000.001.00---------------------
..............................................................................................................................................................................GGCTTTTTTTTCTTTTTTTTGG......................................................221.000.00----1.00-----------------
..........................................................................................................AGCATTGATTGTTAGCGGTG............................................................................................................................201.000.00---------------1.00------
...................................................................................................................................................................................TTTTTTCTTTTTTGCTTACGATT................................................231.000.00-----1.00----------------
...........................................................................................................................................................................ACTGGCTTTTTTTTCTTTTTTTTTC......................................................251.000.00----1.00-----------------
.........................................................................................................................................CTGAAGAGATTGTGTGGT...............................................................................................1811.001.00----------------1.00-----
.................................................................................................AAAGATAGGAGCATTAATG......................................................................................................................................191.000.00------1.00---------------
..........................................................................................................................................................................AACTGGCTTTTTTTTCTTTTCTAG........................................................241.000.001.00---------------------
.................................................................................................................................................................................TTTTTTTTCTTTTTTGCTTCTTT..................................................231.000.00-1.00--------------------
...........................................................................................................................................................................ACTGGCTTTTTTTTCTTTTTTG.........................................................2211.001.00-1.00--------------------
...........................................................................................................................................................................ACTGGCTTTTTTTTCTTTTCT..........................................................211.000.001.00---------------------
....................................................................................................................................................................................................................................ATGAGTTAAGAAACATATT...1911.001.00------------1.00---------
...................................................................................................................................................................................TTTTTTCTTTTTTGCTTCCA...................................................201.000.00-1.00--------------------
..........................................................................................................................................................................AACTGGCTTTTTTTTCTTTCTAG.........................................................231.000.00-1.00--------------------
...................................................................................................................................................................................................................................CATGAGTTAAGAAACATATTTCT2311.001.00-------1.00--------------
................................................................................................................................................................................CTTTTTTTTCTTTTTTGCTTCTG...................................................231.000.00-----------------1.00----
...........................................................................................................................................................................ACTGGCTTTTTTTTCTTTTTTAACC......................................................251.000.001.00---------------------
..........................................................................................................AGCATTGATTGTTAGCGG..............................................................................................................................181.000.00--1.00-------------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTTTTCTG.......................................................221.000.001.00---------------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTTGG..........................................................191.000.00-1.00--------------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTTGGG.........................................................201.000.00-1.00--------------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTTAAG.........................................................201.000.001.00---------------------
............................................................................................................................................................................CTGGCTTTTTTTTCTTTTTTTTTC......................................................241.000.001.00---------------------
..........................................................................................................................................................................AACTGGCTTTTTTTTCTTTTCT..........................................................221.000.00-1.00--------------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTTTTAGAG......................................................231.000.00-1.00--------------------
...........................................................................................................................................................................ACTGGCTTTTTTTTCTTTTTAGA........................................................231.000.00-1.00--------------------
.............................................................................................................................................................................TGGCTTTTTTTTCTTTTTTTTAA......................................................231.000.001.00---------------------
........................................................................................................................................TCTGAAGAGATTGTGT..................................................................................................1660.170.17--------------------0.17-

Antisense strand
TATTCGCACCTGTTTTTCTGCCCTCTAGTCACAGTTATCCAGTTTGACAGTTCTTATCAGCAATTAGGGCTTTTAGTTTGTTTTAAACTAAATGATAAAAGATAGGAGCATTGATTGTTAGCCATGTGACCTCTAATCTGAAGAGATTGTGTGGTCTCTAGTGAAGCATTAACTGGCTTTTTTTTCTTTTTTGCTTACAGGTGCAGACAACTAAGCGAGGGGATCCTCATGAGTTAAGAAACATATTTCT
.........................................................................................................................................(((.(((((((....)))))))...(((((........))))).................)))..................................................
....................................................................................................................................133................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040029(GSM532914)
G026T. (cervix)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR189785SRR038859(GSM458542)
MM386. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
..........................................................................................................AGCATTGATTGTTAGCAAAC............................................................................................................................ 203.000.00--2.00--1.00----------------
..............TTTCTGCCCTCTAGTGAGT......................................................................................................................................................................................................................... 191.000.00----------1.00-----------
..........................................................................................AATGATAAAAGATAGGAG.............................................................................................................................................. 181.000.00------------------1.00---
....................................................CTTATCAGCAATTAGCCT.................................................................................................................................................................................... 181.000.00-----------1.00----------
......................................................................................................................................................................................................................................GAGTTAAGAAACATATTAAG 201.000.00--------------1.00-------
.............GACTAGAGGGCAGAAAA............................................................................................................................................................................................................................ 1720.500.50-------------------0.50--
...........................................................................................................GCTAACAATCAATGC................................................................................................................................ 1560.170.17-----0.17----------------
..........................TGGATAACTGTGACT................................................................................................................................................................................................................. 1580.120.12---------------------0.12