ID: uc002ugc.1_intron_8_0_chr2_171539570_r.5p
GENE: AK127400(1)
chr2:171551297-171551546-


(2)
AGO2.ip 		(1)
B-CELL 		(2)
BREAST 		(19)
CELL-LINE 		(2)
CERVIX 		(1)
HEART 		(2)
LIVER 		(1)
OTHER 		(2)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AAATCAGTGTTGGCCATCTGGGACTCAGCGACCCTTTCTACGAGGCTATGGTAAGAGAGTAAATAGAAAAGGCCCTGAAACTGGACCTGGTGACTAGGGCTTCCAGGAGGGGGAGAAAGGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGTGCCATCTCAGCTCACCGCAACCTCCACCTCATGGGGTTCAAGCGACTCTCCTGC
................................................................................................................(((((((.(((.((((........................)))).))).)))).))).....((....))....................................................................
................................................................................................................113...................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040029(GSM532914)
G026T. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAG...............................................................................................3528.000.00-13.0012.00-1.002.00---------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC.................................................................................................3320.000.009.005.003.001.001.00----1.00-----------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAG.................................................................................................3310.000.00-5.003.00-1.001.00---------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTC..................................................................................................3210.000.00-2.003.003.001.001.00---------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAT...............................................................................................359.000.00-6.002.00-1.00----------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCT.................................................................................................339.000.00-3.004.00-1.00----1.00-----------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCC...............................................................................................357.000.00-4.003.00------------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAT...............................................................................................355.000.00-4.001.00------------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCATG...............................................................................................355.000.00--5.00------------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAT.................................................................................................335.000.00-3.001.00-1.00----------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCCG.................................................................................................335.000.00-1.004.00------------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAG...............................................................................................355.000.00-1.003.00--1.00---------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTC...............................................................................................354.000.00--1.00-2.001.00---------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCATC.................................................................................................334.000.001.001.001.00--1.00---------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTGGG............................................................................................................254.000.004.00--------------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAA.................................................................................................334.000.00-1.002.00--1.00---------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCGC..................................................................................................324.000.003.001.00-------------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCATG.................................................................................................334.000.00-3.00---1.00---------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTT...............................................................................................354.000.00-3.00---1.00---------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAT...............................................................................................354.000.00--2.00--2.00---------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTTTTTGGC....................................................................................................333.000.003.00--------------------------------
................................................................................................................................................................GTTTTGCTCTTGTTGAAAA.......................................................................193.000.00--------3.00------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCACC.................................................................................................333.000.00--1.00-2.00----------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGG................................................................................................342.000.00-1.001.00------------------------------
..........................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACC.............................................................................................352.000.00-1.00---1.00---------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTCCCC.............................................................................................................242.000.002.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTATC........................................................................................................292.000.002.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTACC..........................................................................................................272.000.002.00--------------------------------
..................................................................................................................................................TTTTTTGAGACGGAGTTTAGA...................................................................................212.000.00----------2.00----------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTCGAG.............................................................................................................242.000.002.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTTGGC.......................................................................................................302.000.002.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTCGAG........................................................................................................292.000.002.00--------------------------------
....................................................................................................................AAGGTCTTTTTTTTTTTTTTTTTTTTTTCTCC......................................................................................................322.000.002.00--------------------------------
.......................................................................................................................................................................................................ATCTCAGCTCACCGCAACCTCCACCTCGGG.....................302.000.002.00--------------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGG.................................................................................................332.000.00--2.00------------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCC.................................................................................................332.000.001.00--1.00-----------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTTTCC.......................................................................................................302.000.002.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTTGC........................................................................................................292.000.001.00--1.00-----------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAC...............................................................................................352.000.00-1.00--1.00----------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCC...............................................................................................352.000.00-1.001.00------------------------------
....................................................................................................................AAGGTCTTTTTTTTTTTTTTCTCC..............................................................................................................242.000.001.00--1.00-----------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGC.................................................................................................332.000.002.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTGCC..............................................................................................................232.000.002.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTCTCC............................................................................................................252.000.001.00--1.00-----------------------------
....................................................................................................................AAGGTCTTTTTTTTTTTTTTTTTCTCC...........................................................................................................272.000.001.00--1.00-----------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTGG..........................................................................................................272.000.002.00--------------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACG...............................................................................................352.000.00-1.001.00------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTAAGC............................................................................................................251.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTGGC............................................................................................................251.000.00---1.00-----------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGC.................................................................................................331.000.00----1.00----------------------------
...............................................................................................................................................................AGTTTTGCTCTTGTTGCCCAGGCATCG................................................................271.000.00---1.00-----------------------------
....................................................................................................................AAGGTCTTTTTTTTTTTTTTTTAATT............................................................................................................261.000.00---1.00-----------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTAACG............................................................................................................251.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTAACT..........................................................................................................271.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTAACA..................................................................................................................191.000.001.00--------------------------------
.............................................................................................................................................................................................CAATGGTGCCATCTCAGCTC.........................................2001.001.00---------------------1.00-----------
....................................................................................................................................................................TGCTCTTGTTGCCCAGGCTGGGCTC.............................................................251.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTGAGT.............................................................................................................241.000.00---1.00-----------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTTCCGG......................................................................................................311.000.001.00--------------------------------
....................................................................................................................AAGGTCTTTTTTTTTTTTTTTTTGGG............................................................................................................261.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTACC...........................................................................................................261.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTCTCC..........................................................................................................271.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTCATC.........................................................................................................281.000.001.00--------------------------------
............................................................................................................................................................................................................AGCTCACCGCAACCTCCACCTTGG......................241.000.001.00--------------------------------
....................................................................................................................AAGGTCTTTTTTTTTTTTTGTTT...............................................................................................................231.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTTTGG.......................................................................................................301.000.001.00--------------------------------
.......................................................................................................CAGGAGGGGGAGAAAATG.................................................................................................................................181.000.00-----------------1.00---------------
....................................................................................................................AAGGTCTTTTTTTTTTTTTTTTTTTCCC..........................................................................................................281.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTGT...........................................................................................................261.000.00---1.00-----------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTCGGG............................................................................................................251.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTCCC..............................................................................................................231.000.001.00--------------------------------
........................................................................................................................................................................CTTGTTGCCCAGGCTGGAGTGCTCTG........................................................261.000.00---------------------------1.00-----
.......................................................................................................................................................TGAGACGGAGTTTTGCTCTTGTACCC.........................................................................261.000.00---1.00-----------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTTTTTCCT....................................................................................................331.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTGGTC...............................................................................................................221.000.001.00--------------------------------
....................................................................................................................AAGGTCTTTTTTTTTGG.....................................................................................................................171.000.001.00--------------------------------
....................................................................................................................AAGGTCTTTTTTTTTTTTTTTTAAGC............................................................................................................261.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTCATC.............................................................................................................241.000.001.00--------------------------------
...................................................................................................................AAAGGTCTTTTTTTTTTTTTTTTTTTGGG..........................................................................................................291.000.001.00--------------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGC.................................................................................................331.000.00-1.00-------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTCTC..............................................................................................................231.000.00---1.00-----------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTCGG..................................................................................................................191.000.001.00--------------------------------
....................................................................................................................AAGGTCTTTTTTTTTTTTTTTTTTTTTTTACC......................................................................................................321.000.001.00--------------------------------
....................................................................................................................................................TTTTGAGACGGAGTTTTGAAA.................................................................................211.000.00------------------------1.00--------
....................................................................................................................AAGGTCTTTTTTTTTTTTTTTTTGGAG...........................................................................................................271.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTCGAG..........................................................................................................271.000.001.00--------------------------------
.......................................................................................................................................................................................................ATCTCAGCTCACCGCAACCTCCACCGGG.......................281.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTATC............................................................................................................251.000.001.00--------------------------------
...............................................................................................................................................................................CCCAGGCTGGAGTGCAATGGTGCCCCT................................................271.000.00---1.00-----------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTAAT............................................................................................................251.000.001.00--------------------------------
...............................................................................................................................................................................CCCAGGCTGGAGTGCAATGGTGCCACCTA..............................................291.000.00------------------1.00--------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTAGAG...........................................................................................................261.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTGGCC...............................................................................................................221.000.001.00--------------------------------
..........................................................................................................................................................................................................................................CAAGCGACTCTCCTGCATA191.000.00------------------------------1.00--
.......................................................................................................................................................................................................ATCTCAGCTCACCGCAACCTCCCTGG.........................261.000.00---1.00-----------------------------
..........................................................................................................................................................................................................TCAGCTCACCGCAACCTCCTTT..........................221.000.00-----------------------1.00---------
............................................................................................................................................................................................................AGCTCACCGCAACCTTAC............................181.000.00---1.00-----------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTT.................................................................................................331.000.00----1.00----------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTAG.........................................................................................................281.000.001.00--------------------------------
.......................................................AGAGTAAATAGAAAAAAG.................................................................................................................................................................................181.000.00-----------1.00---------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTTTTTACC....................................................................................................331.000.001.00--------------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTG.................................................................................................331.000.00-1.00-------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTGGCC.........................................................................................................281.000.001.00--------------------------------
.......................................................................................................................................................................................................ATCTCAGCTCACCGCAACCGACC............................231.000.001.00--------------------------------
......................................................................................................................GGTCTTTTTTTTTTTTTTTTTTTTTTTTTTGGC...................................................................................................331.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTCTCC.........................................................................................................281.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTGGGC.........................................................................................................281.000.001.00--------------------------------
....................................................................................................................AAGGTCTTTTTTTTTTTTTTTTCCCC............................................................................................................261.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTTTTCCCC....................................................................................................331.000.001.00--------------------------------
........................................................................................................................................................................................................................................TTCAAGCGACTCTCCTGAA191.000.00-------------------1.00-------------
...................................................................................................................AAAGGTCTTTTTTTTTTTGGT..................................................................................................................211.000.00----------------------------1.00----
....................................................................................................................AAGGTCTTTTTTTTTTTTTTTTTTTTTGTT........................................................................................................301.000.00---1.00-----------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCACG.................................................................................................331.000.00-1.00-------------------------------
....................................................................................................................AAGGTCTTTTTTTTTTTCCCC.................................................................................................................211.000.00---1.00-----------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTGGGG.........................................................................................................281.000.00---1.00-----------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTAGAG............................................................................................................251.000.001.00--------------------------------
..............................................................................................................................................................................GCCCAGGCTGGAGTGCAATGGTTGTC..................................................261.000.00--------------------------1.00------
.......................................................................................................................GTCTTTTTTTTTTTTTTTTTTTCGC..........................................................................................................251.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTCCAC........................................................................................................291.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTGCT..........................................................................................................271.000.001.00--------------------------------
......................................................................................................................GGTCTTTTTTTTTTTTTTTTTTTTTTTTTCCT....................................................................................................321.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTGTT............................................................................................................251.000.00---1.00-----------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTCGGC.............................................................................................................241.000.001.00--------------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCG.................................................................................................331.000.00--1.00------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTGGC.........................................................................................................281.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTCCC.........................................................................................................281.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTGTTT........................................................................................................291.000.00---1.00-----------------------------
......................................................................................................................................................TTGAGACGGAGTTTTGCTCTCTG.............................................................................231.000.00---1.00-----------------------------
.........................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAC..............................................................................................351.000.00-1.00-------------------------------
............................................................................................................................................................................................................AGCTCACCGCAACCTCCACCTCATGGGTTTG...............311.000.001.00--------------------------------
....................................................................................................................AAGGTCTTTTTTTTTTTTTTTTTTTTTTATC.......................................................................................................311.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTGGGT...........................................................................................................261.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTAAGA...........................................................................................................261.000.00---1.00-----------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTATC..........................................................................................................271.000.001.00--------------------------------
...............................................................................................................................................................................................................TCACCGCAACCTCCACCTCAGAGG...................241.000.00---1.00-----------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTATTT...........................................................................................................261.000.001.00--------------------------------
.......................................................................................................................................................TGAGACGGAGTTTTGCTCTTGTAAA..........................................................................251.000.00--------------------1.00------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTTTTCGG.....................................................................................................321.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTGCC..........................................................................................................271.000.001.00--------------------------------
....................................................................................................................AAGGTCTTTTTTTTTTTTTTTCCCC.............................................................................................................251.000.001.00--------------------------------
...................................................................................................................AAAGGTCTTTTTTTTTTTGG...................................................................................................................201.000.00---1.00-----------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTGGG..........................................................................................................271.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTCAGG........................................................................................................291.000.001.00--------------------------------
....................................................................................................................AAGGTCTTTTTTTTTTTTTTTTTTCT............................................................................................................261.000.00---1.00-----------------------------
........................................................................................................................................TTTTTTTTTTTTTTTTGAGACGGAGTTTAGCC..................................................................................321.000.00---1.00-----------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTTGTG.......................................................................................................301.000.00---1.00-----------------------------
....................................................................................................................................................TTTTGAGACGGAGTTTTGCTCTAA..............................................................................241.000.00----------------------1.00----------
....................................................................................................................AAGGTCTTTTTTTTTTTTTTTTTTTTTCCCC.......................................................................................................311.000.001.00--------------------------------
.............................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCTTT...........................................................................................341.000.00---------1.00-----------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTTTTTTCT....................................................................................................331.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTAGA........................................................................................................291.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTCAG.........................................................................................................281.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTAAGG.........................................................................................................281.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTGAC.........................................................................................................281.000.001.00--------------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCA.................................................................................................331.000.00--1.00------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTTTTTCCC....................................................................................................331.000.001.00--------------------------------
........................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAC.................................................................................................331.000.00-1.00-------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTCTCC........................................................................................................291.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTTATC.......................................................................................................301.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTTTTTTTTTGCC......................................................................................................311.000.001.00--------------------------------
.....................................................................................................................AGGTCTTTTTTTTTTTTTTTCACC.............................................................................................................241.000.001.00--------------------------------
...................................................................................................................................................................................................................CGCAACCTCCACCTCATG.....................1890.220.22-------------------------------0.22-

Antisense strand
AAATCAGTGTTGGCCATCTGGGACTCAGCGACCCTTTCTACGAGGCTATGGTAAGAGAGTAAATAGAAAAGGCCCTGAAACTGGACCTGGTGACTAGGGCTTCCAGGAGGGGGAGAAAGGTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGTGCCATCTCAGCTCACCGCAACCTCCACCTCATGGGGTTCAAGCGACTCTCCTGC
................................................................................................................(((((((.(((.((((........................)))).))).)))).))).....((....))....................................................................
................................................................................................................113...................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040042(GSM532927)
G428N. (cervix)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040029(GSM532914)
G026T. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
...................................................................................................................................................................................GGCTGGAGTGCAATGGTGCCATGGG.............................................. 252.000.001.00--1.00-----------------------------
...................................................................................................................................................................................GGCTGGAGTGCAATGGTGCCATGGGC............................................. 262.000.002.00--------------------------------
........................................................................................................................................................................................................TGGAGGTTGCGGTGAGCTGAGA............................ 2201.001.00-------1.00-------------------------
...................................................................................................................................................................................GGCTGGAGTGCAATGGTGCCAGGGC.............................................. 251.000.001.00--------------------------------
...................................................................................................................................................................................................................CGCAACCTCCACCTCATGT.................... 191.000.00------------1.00--------------------
......................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAGACC....................................................................................................... 2901.001.00------1.00--------------------------
.......................................................................................................................................................................................................................................GTTCAAGCGACTCTCCT.. 171.000.00-------1.00-------------------------
...................................................................................................................................................................................................GAGGTTGCGGTGAGCTGAGATGGCA.............................. 2501.001.00-----------------------------1.00---
.....................................................................................................................................................................................................................................GGGTTCAAGCGACTCTCCGGG 211.000.00---------------1.00-----------------
......................................................................................................................GGTCTTTTTTTTTTTTTTTTTTTTTTTTTTC..................................................................................................... 311.000.00------1.00--------------------------
......................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAGACC..................................................................................................... 3101.001.00------1.00--------------------------
................................................................................................................................................................................................................CACCGCAACCTCCACTCA........................ 181.000.00--------------1.00------------------
...................................................................................................................................................................................GGCTGGAGTGCAATGGTGAGC.................................................. 211.000.00---1.00-----------------------------
............................................................................................................................................................................................................AGCTCACCGCAACCTTTGG........................... 191.000.00-------------1.00-------------------
..................................................................................................................................................................................AGGCTGGAGTGCAATGGTGCCATCTTCGG........................................... 291.000.001.00--------------------------------
...................................................................................................................................................................................GGCTGGAGTGCAATGGTGCCATAGGC............................................. 261.000.00---1.00-----------------------------
......................................................................................................................................................................................................................................GAGAGTCGCTTGAACC.... 1601.001.00-------1.00-------------------------
...................................................................................................................................................................................GGCTGGAGTGCAATGGTGCCATGGAC............................................. 261.000.001.00--------------------------------
...........................................................................................................................................................................................................CAGCTCACCGCAACCTCCACCTCGGGC.................... 271.000.00---1.00-----------------------------
.......................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAC.................................................................................................... 3101.001.00------1.00--------------------------
................................................................................................................................................................GTTTTGCTCTTGTTGCCCAGGCTGGCG............................................................... 271.000.001.00--------------------------------
......................................................................................................................................................................................................CATCTCAGCTCACCGACT.................................. 181.000.00----------------1.00----------------
...................................................................................................................AAAGGTCTTTTTTTTTTTTTTTTTCT............................................................................................................. 261.000.00-------------------------1.00-------
................................................................................................................................................................................................................ATGAGGTGGAGGTTGCGGTG...................... 2070.140.14--------------------------------0.14