| (1) AGO1.ip OTHER.mut | (1) B-CELL | (2) BRAIN | (5) CELL-LINE | (3) CERVIX | (1) LIVER | (1) OTHER | (1) XRN.ip |
| TTATCTTTGTAACAGAATAATTCTTTATGAGTTTTTCTTGTACCTATCCACAAACTTAGTTCTCATCTTTAGGCTTTCTCTCCTTTTTAAAGTGCACACATGTGTATTCCTGTCACCGAACTCTTTTTATTAACTGTTTAATATTTTTATCAAAATATTTTTGAGCAATGTTCATAACCCTTGGCATTGATTCCTACCAGTGAGAAGAGGGGATGTCCTGGCAGCATGGAGTGGAATCCGTCCTCTTGTT .....................................................................((((.................(((((((....)))))))))))...............((((((....))))))........................................................................................................... .................................................................66...............................................................................147..................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR343335 | SRR343336 | SRR343334 | SRR343337 | SRR189785 | SRR189782 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189784 | SRR040013(GSM532898) G648T. (cervix) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | GSM532874(GSM532874) G699T. (cervix) | SRR040023(GSM532908) G575T. (cervix) | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039193(GSM494812) HL60 cell line is derived from acute promyelo. (cell line) | GSM450599(GSM450599) miRNA sequencing raw reads from post-mortem s. (brain) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189786 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................TTTATTAACTGTTTACAG........................................................................................................... | 18 | 103.00 | 0.00 | 36.00 | 22.00 | 17.00 | 14.00 | 14.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................TTTATTAACTGTTTACAGA.......................................................................................................... | 19 | 41.00 | 0.00 | 17.00 | 5.00 | 9.00 | 10.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................GGCAGCATGGAGTGGAATTAA.......... | 21 | 3.00 | 0.00 | - | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................AGAAGAGGGGATGTCCTGGCAGCAGGAG.................... | 28 | 2.00 | 0.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................GCATGGAGTGGAATCCGTC........ | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...............................................................................................................................................................................AACCCTTGGCATTGATTCCTACCAGAA................................................ | 27 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ......................................................................AGGCTTTCTCTCCTTTAGTT................................................................................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ................................................................................................................................................................................................................GGGGATGTCCTGGCAGCATGGAGTGG................ | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................GTGAGAAGAGGGGATGTCCT............................... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................TTTATTAACTGTTTACCG........................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................TGGCAGCATGGAGTGGAATC............ | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................CCTGGCAGCATGGAGTGGAATC............ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ..........................................................................................................................................................................................................AGAAGAGGGGATGTCCTGGCAGCACGG..................... | 27 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................GAGGGGATGTCCTGGCAGCATGGAGT.................. | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................TGAGAAGAGGGGATGTCC................................ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................GGAGTGGAATCCGTCCTCTTGTT | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................................................GCAGCATGGAGTGGAATC............ | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| TTATCTTTGTAACAGAATAATTCTTTATGAGTTTTTCTTGTACCTATCCACAAACTTAGTTCTCATCTTTAGGCTTTCTCTCCTTTTTAAAGTGCACACATGTGTATTCCTGTCACCGAACTCTTTTTATTAACTGTTTAATATTTTTATCAAAATATTTTTGAGCAATGTTCATAACCCTTGGCATTGATTCCTACCAGTGAGAAGAGGGGATGTCCTGGCAGCATGGAGTGGAATCCGTCCTCTTGTT .....................................................................((((.................(((((((....)))))))))))...............((((((....))))))........................................................................................................... .................................................................66...............................................................................147..................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR343335 | SRR343336 | SRR343334 | SRR343337 | SRR189785 | SRR189782 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189784 | SRR040013(GSM532898) G648T. (cervix) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | GSM532874(GSM532874) G699T. (cervix) | SRR040023(GSM532908) G575T. (cervix) | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039193(GSM494812) HL60 cell line is derived from acute promyelo. (cell line) | GSM450599(GSM450599) miRNA sequencing raw reads from post-mortem s. (brain) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189786 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...........................................................................................................................................................................................................................................ATCCGTCCTCTTGTTAAA | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ...........ACAGAATAATTCTTTAATTG........................................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........AACAGAATAATTCTTTACTC............................................................................................................................................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........AACAGAATAATTCTTTACTG............................................................................................................................................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........AACAGAATAATTCTTTAGAC............................................................................................................................................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........AACAGAATAATTCTTTAGTGC........................................................................................................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| ....................................................................................ATGTGTGCACTTTAAAA..................................................................................................................................................... | 17 | 5 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 |