ID: uc002tuw.2_intron_10_0_chr2_136622734_r.5p
GENE: (6)
chr2:136623502-136623751-


(4)
AGO2.ip
(6)
B-CELL
(1)
BRAIN
(1)
BREAST
(20)
CELL-LINE
(1)
FIBROBLAST
(1)
HEART
(4)
LIVER
(3)
OTHER
(4)
SKIN
(2)
UTERUS
(1)
XRN.ip

Sense strand
CTTATAGGCTGGTCTTTCTTGCCTGCTGTGTTGCGCCAACCAACCCAAGGGTCAGTCGTTTTGGGGGTTTTTGTTTGTTTTTGAAACAGTCTCTCTCTGTCACCCAGGCTGGAGTGCAATGGCAAAGTCATGGCTCACTGTAGCCTCCACTTTCTGGGCTCAAGTGATCCTACCATCTCAACCTCCTGAGTAGCTGGGATTATAGGTGTGAATCACTGCACCCAGCTAATTAAAAAAACTTTTTTAGAGA
..................................................((((........(((((...((((((.......))))))...))))).....((((((.(((((.((.((((...(((....)))..)))).)))))))...))))))......))))..................................................................................
..................................................51............................................................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
TAX577743(Rovira)
total RNA. (breast)
.....................................................AGTCGTTTTGGGGGTTTTT..................................................................................................................................................................................1919.009.00--1.00---2.001.00---1.00----1.00---1.001.00----------------1.00----
..........................................................................................................................................................TGGGCTCAAGTGATCCTAAAAA..........................................................................226.000.00---3.003.00--------------------------------------
.....................................................AGTCGTTTTGGGGGTTTTTT.................................................................................................................................................................................2016.009.00--2.00----1.00---1.00------------------------1.00-----1.00
.....................................................AGTCGTTTTGGGGGTTTT...................................................................................................................................................................................1815.005.00--------------1.001.00---------1.00--------1.00------1.00-
.....................................................................................ACAGTCTCTCTCTGTCACCCAGGCCGG..........................................................................................................................................272.000.00-2.00-----------------------------------------
.............................................................................................TCTCTGTCACCCAGGCTGGCCTC......................................................................................................................................232.000.00-2.00-----------------------------------------
............................................................TTGGGGGTTTTTGTTTGGACC.........................................................................................................................................................................212.000.002.00------------------------------------------
....................................................................................................................................................................................ACCTCCTGAGTAGCTGGGATTATGGGT...........................................272.000.002.00------------------------------------------
..........................................................TTTTGGGGGTTTTTGTTTCTC...........................................................................................................................................................................211.000.001.00------------------------------------------
......................................................................................................CCCAGGCTGGAGTGCAATGGCAAATCA.........................................................................................................................271.000.00-------------1.00-----------------------------
.............................................................................................TCTCTGTCACCCAGGCTGGAGTGCATCGG................................................................................................................................291.000.001.00------------------------------------------
....................................................................................................................................................................................................................................ATTAAAAAAACTTTTTTTAAA.211.000.00-----1.00-------------------------------------
.....................................................AGTCGTTTTGGGGGTTTTAT.................................................................................................................................................................................2011.005.00-----------------------1.00-------------------
.............................................................................................................................................................................................GTAGCTGGGATTATAGGTG..........................................1901.001.00------------------------------1.00------------
........................................................................................................CAGGCTGGAGTGCAATGGCAAAAAAT........................................................................................................................261.000.00---------------------------1.00---------------
.............................................................................................TCTCTGTCACCCAGGCTGGAGTGCGGC..................................................................................................................................271.000.001.00------------------------------------------
...........................................................TTTGGGGGTTTTTGTTTGTTCAC........................................................................................................................................................................231.000.001.00------------------------------------------
............................................................TTGGGGGTTTTTGTTTGTC...........................................................................................................................................................................191.000.00-1.00-----------------------------------------
............................................................TTGGGGGTTTTTGTTTGAC...........................................................................................................................................................................191.000.00-1.00-----------------------------------------
........................................................................................................................................................................................CCTGAGTAGCTGGGATTATAGCAA..........................................2401.001.00--------------------------------1.00----------
.....................................................AGTCGTTTTGGGGGTTTTTTC................................................................................................................................................................................2111.009.00----------------------------------------1.00--
..............................................................................................................................................................................................TAGCTGGGATTATAGGTGTTCG......................................221.000.001.00------------------------------------------
...........................................................................................TCTCTCTGTCACCCAGGCTGGTAA.......................................................................................................................................241.000.00-------------------------------------1.00-----
.............................................................TGGGGGTTTTTGTTTAGTC..........................................................................................................................................................................191.000.00-----1.00-------------------------------------
..................................................................................................................................................................................................................AATCACTGCACCCAGCTAATTAAAAAAACTT.........3111.001.00-----1.00-------------------------------------
..............................................................GGGGGTTTTTGTTTGTATTG........................................................................................................................................................................201.000.00----------------------1.00--------------------
.............................................................TGGGGGTTTTTGTTTGTTCTGA.......................................................................................................................................................................221.000.00-1.00-----------------------------------------
.....................................................................................................ACCCAGGCTGGAGTGCAATGGA...............................................................................................................................221.000.00------------1.00------------------------------
.....................................................AGTCGTTTTGGGGGTGTTT..................................................................................................................................................................................191.000.00-------------------1.00-----------------------
.....................................................................................................ACCCAGGCTGGAGTGCAATGGCAAATCA.........................................................................................................................281.000.00-------------------------------1.00-----------
........................................................................................................................................................................................CCTGAGTAGCTGGGATTATAG.............................................2101.001.00---------------------------------------1.00---
..............................................................................................................................................................................................TAGCTGGGATTATAGGTG..........................................1801.001.00------------1.00------------------------------
........................................................................................................CAGGCTGGAGTGCAATGGCAA.............................................................................................................................2101.001.00-----------------------------------1.00-------
...................................................................................................................................................................................AACCTCCTGAGTAGCTGGTA...................................................201.000.00--------------------------1.00----------------
...........................................................TTTGGGGGTTTTTGTTTGAGAC.........................................................................................................................................................................221.000.001.00------------------------------------------
................................................................GGGTTTTTGTTTGTTTTTGCTC....................................................................................................................................................................221.000.001.00------------------------------------------
..........................................................TTTTGGGGGTTTTTGTTTGTTTTTTGG.....................................................................................................................................................................271.000.001.00------------------------------------------
.............................................................TGGGGGTTTTTGTTTGTTTTCCCC.....................................................................................................................................................................241.000.001.00------------------------------------------
............................................................................................................................................................................................AGTAGCTGGGATTATAGGTGGGGC......................................241.000.00---------------------------------1.00---------
......................................ACCAACCCAAGGGTCAGTCGTTTTGGGGGT......................................................................................................................................................................................3011.001.001.00------------------------------------------
...........................................................................................................................................................................................GAGTAGCTGGGATTATATACT..........................................211.000.00-----------------1.00-------------------------
..........................................................TTTTGGGGGTTTTTGTTTTTTC..........................................................................................................................................................................221.000.00-1.00-----------------------------------------
.........................................................................................TCTCTCTCTGTCACCCAGGCTGGAGTGCACGGC................................................................................................................................331.000.001.00------------------------------------------

Antisense strand
CTTATAGGCTGGTCTTTCTTGCCTGCTGTGTTGCGCCAACCAACCCAAGGGTCAGTCGTTTTGGGGGTTTTTGTTTGTTTTTGAAACAGTCTCTCTCTGTCACCCAGGCTGGAGTGCAATGGCAAAGTCATGGCTCACTGTAGCCTCCACTTTCTGGGCTCAAGTGATCCTACCATCTCAACCTCCTGAGTAGCTGGGATTATAGGTGTGAATCACTGCACCCAGCTAATTAAAAAAACTTTTTTAGAGA
..................................................((((........(((((...((((((.......))))))...))))).....((((((.(((((.((.((((...(((....)))..)))).)))))))...))))))......))))..................................................................................
..................................................51............................................................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR037936(GSM510474)
293cand1. (cell line)
SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
TAX577743(Rovira)
total RNA. (breast)
......................................................................................CAGTCTCTCTCTGTCACCCAATC............................................................................................................................................. 232.000.00----------2.00--------------------------------
........................................................................................GTCTCTCTCTGTCACCGAC............................................................................................................................................... 192.000.00--------2.00----------------------------------
.............................................................................................................................................................GCTCAAGTGATCCTACTC........................................................................... 181.000.00---------1.00---------------------------------
...............................................................................................................................................................................................................................AGCTAATTAAAAAAACAGAC....... 201.000.00----------------------------1.00--------------
......................................................................................................CCCAGGCTGGAGTGCAATGGCAAAGTCGAC...................................................................................................................... 301.000.001.00------------------------------------------
......................................................................................................................................................................................................................ACTGCACCCAGCTAATTCT................. 191.000.00------------------1.00------------------------
.........................................................................................TCTCTCTCTGTCACCCAGAGA............................................................................................................................................ 211.000.00------------------------1.00------------------
..................................................................................................GTCACCCAGGCTGGAGTGCAAC.................................................................................................................................. 221.000.00---------1.00---------------------------------
.................................................................................................................................................................................TCCCAGCTACTCAGGAGGTTGA................................................... 2201.001.00-----------------------------1.00-------------
.............................................................................................TCTCTGTCACCCAGGCTGGAGTGCAATTCA............................................................................................................................... 301.000.001.00------------------------------------------