ID: uc002tqt.1_intron_15_0_chr2_130931178_r.3p
GENE: (3)
chr2:130931128-130931377-


(1)
AGO2.ip
(5)
B-CELL
(5)
BRAIN
(4)
BREAST
(9)
CELL-LINE
(1)
CERVIX
(2)
HEART
(1)
HELA
(4)
LIVER
(2)
OTHER
(7)
SKIN
(1)
TESTES

Sense strand
GGCTTCCTTTGGGTGCAGGGCTGATCCCATAGGTCTTAGCCAGGGAGTGGCTTCCTCAGAGGGAGCTGGGCAGCAGGTGGTGCAGGACTAGAGCCGGGGCAGGAGTGGGTGCTGGTCCTGCACGCGGCTTCACCACACATTGTTTCAGGAGCTGCACACCATCTTCCCATGGCTGGTAGAAAGCATTTTTGGCAGCCTAGATGGTGTCCTCGTTGGCTGGAACCTCCGCTGCTTACAGGGGCGCGTGAAT
.....................................................................((....((((((((((((((((.(((...((....)).))).))))))))))))((((((((...((.....))....)))))))).)))).(((..(((....))).)))..))..................................................................
....................................................................69........................................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR189782SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
.........................................................................................................................................................................TGGCTGGTAGAAAGCATT...............................................................1816.006.00------3.00---------------1.00--1.00--------1.00--------
.....................................................................................................................................................................................................TAGATGGTGTCCTCGTTGGCTGGAAC...........................2615.005.00--5.00----------------------------------------
........................................................................................................................................................................ATGGCTGGTAGAAAGCAT................................................................1814.004.00-------------2.00---1.00--------------1.00----------
........................................................................................................GTGGGTGCTGGTCCTGCACGCGGCTTCACC....................................................................................................................3014.004.00---4.00---------------------------------------
........................................................................................................................................................................ATGGCTGGTAGAAAGCATT...............................................................1914.004.00--------1.00---------1.00--------1.00-----1.00---------
.......................................................................................................................................................................CATGGCTGGTAGAAAGCA.................................................................1813.003.00-------3.00-----------------------------------
.........................................................................CAGGTGGTGCAGGACTAGAGCCG..........................................................................................................................................................2322.502.50---------2.50---------------------------------
...............................................................AGCTGGGCAGCAGGTGGTGCAGGACCAG...............................................................................................................................................................282.000.002.00------------------------------------------
.........................................................................................................................................................................TGGCTGGTAGAAAGCATTTTTGGCAG.......................................................2612.002.00--------1.00-----------------1.00----------------
.......................................................................................................................................................................CATGGCTGGTAGAAAGCATT...............................................................2012.002.00-------------------------------1.00-----1.00-----
.........................................................AGAGGGAGCTGGGCAGCAGGTGGTGCAGGACC.................................................................................................................................................................322.000.00-2.00-----------------------------------------
........................................................................................................................................................................ATGGCTGGTAGAAAGC..................................................................1612.002.00-----------1.00---------1.00---------------------
.......................................................................................................AGTGGGTGCTGGTCCTGCACGCGGCTTC.......................................................................................................................2812.002.00------------2.00------------------------------
.........................................................................................................................................................................................TTTTTGGCAGCCTAGATGGTGTCCG........................................251.000.00-1.00-----------------------------------------
....................................................................................................................................................................TCCCATGGCTGGTAGAAAGCCTTT..............................................................241.000.00----------------------------1.00--------------
............GTGCAGGGCTGATCCCATAG..........................................................................................................................................................................................................................2011.001.00-----------1.00-------------------------------
.......................................................................................................................................................................CATGGCTGGTAGAAAGCATTTTTGGCA........................................................2711.001.00----1.00--------------------------------------
.........................................................................................................................................................................TGGCTGGTAGAAAGCATTTTTGG..........................................................2311.001.00--------1.00----------------------------------
.........................................................................................................TGGGTGCTGGTCCTGCACGCGGCTTCCCAC...................................................................................................................301.000.001.00------------------------------------------
.............................................................................................................................................................................................TGGCAGCCTAGATGGTGTCC.........................................2011.001.001.00------------------------------------------
.......................................................................................................................GCACGCGGCTTCACCCGC.................................................................................................................181.000.00------------------------1.00------------------
.........................................................................................................................................................................TGGCTGGTAGAAAGCATTTTT............................................................2111.001.00----1.00--------------------------------------
.........................................................................................................................................................................................................TGGTGTCCTCGTTGGCTGGAAC...........................2211.001.00------------------------------------1.00------
.....................................................................................................................................................................................AGCATTTTTGGCAGCCTAGATGGTGCCCT........................................291.000.001.00------------------------------------------
.........................................................................................................TGGGTGCTGGTCCTGCACGCGGCTCC.......................................................................................................................261.000.001.00------------------------------------------
.........................................................................................................................................................................TGGCTGGTAGAAAGCATTT..............................................................1911.001.00----------1.00--------------------------------
....................................................................................................................................................................................................CTAGATGGTGTCCTCGTTGGCG................................221.000.00-----1.00-------------------------------------
...........................................................AGGGAGCTGGGCAGCAGGGGTG.........................................................................................................................................................................221.000.00-1.00-----------------------------------------
......................................................................................................................................................................................................AGATGGTGTCCTCGTTGGCTGGAAC...........................2511.001.00----------------1.00--------------------------
.......................................................................................................AGTGGGTGCTGGTCCTGCACGCGGCTCACC.....................................................................................................................301.000.001.00------------------------------------------
.........................................................AGAGGGAGCTGGGCAGCAGGTGGCG........................................................................................................................................................................251.000.001.00------------------------------------------
.....................................................................................................................................................................CCCATGGCTGGTAGAAAGCATTTTTGGCA........................................................2911.001.00----------1.00--------------------------------
.......................................................................................................................................................................CATGGCTGGTAGAAACCTG................................................................191.000.00-----------------------------------1.00-------
.............................................................................TGGTGCAGGACTAGAGCCGGGGCAGGAGCGGG.............................................................................................................................................321.000.00-1.00-----------------------------------------
.........................................................................................................................................................................TGGCTGGTAGAAAGCATTTTTTGC.........................................................2411.001.00----1.00--------------------------------------
......CTTTGGGTGCAGGGCTGATCCCATAG..........................................................................................................................................................................................................................2611.001.00--------------1.00----------------------------
....................................................................................................................................................................................................CTAGATGGTGTCCTCGTTGGCT................................2211.001.00-----1.00-------------------------------------
.................................................................................GCAGGACTAGAGCCGGGGCAGGA..................................................................................................................................................2321.001.00---1.00---------------------------------------
....................................................................................................................................................................................................................................CTGCTTACAGGGGCGTTT....181.000.00------------------------------1.00------------
...........................................................AGGGAGCTGGGCAGCAGGTGGTGCAGGACC.................................................................................................................................................................301.000.00-1.00-----------------------------------------
.............................................................................................................................................................ACCATCTTCCCATGGGGC...........................................................................181.000.00-----------------------------1.00-------------
.......................................................................................................AGTGGGTGCTGGTCCTGCACGCGGCC.........................................................................................................................261.000.001.00------------------------------------------
.......................................................................AGCAGGTGGTGCAGGTTG.................................................................................................................................................................181.000.00---------------1.00---------------------------
.........................................................................................................TGGGTGCTGGTCCTGCACGCGGCCTC.......................................................................................................................261.000.001.00------------------------------------------
.......................................................................................................................................................................CATGGCTGGTAGAAAGCATTTTT............................................................2311.001.00--------------------1.00----------------------
..................................................................................................................................................AGGAGCTGCACACCATCT......................................................................................1830.670.67--------------------------------------0.67----
........................................................................................................................................................................................................ATGGTGTCCTCGTTGGCT................................1820.500.50-----------------------------------------0.50-
......................................................CTCAGAGGGAGCTGGGCAGCAGGTG...........................................................................................................................................................................2520.500.50----0.50--------------------------------------
......................................................................CAGCAGGTGGTGCAGGACTAGAGCCGGG........................................................................................................................................................2820.500.50-----0.50-------------------------------------
..............................................................................................................................................................................................GGCAGCCTAGATGGTG............................................1620.500.50----------------------------------------0.50--
...........................................................................................................................................................................................................GTGTCCTCGTTGGCTGGAACCTCCGCTGC..................2920.500.50---------------------------------------0.50---
.................................................................................................................................................................................................................TCGTTGGCTGGAACCTCCGCTGCTTACAGGG..........3120.500.50--0.50----------------------------------------
...................................................................................AGGACTAGAGCCGGGGCAGGA..................................................................................................................................................2120.500.50-----0.50-------------------------------------
...........................................................................................................................................TTGTTTCAGGAGCTGCACACCA.........................................................................................2220.500.50------------------------------------------0.50
...............................................................................................................................................TTCAGGAGCTGCACACC..........................................................................................1720.500.500.50------------------------------------------
..............................................................................................................................................................CCATCTTCCCATGGCTGGTAGA......................................................................2230.330.33--------------0.33----------------------------
..............................................................GAGCTGGGCAGCAGGTGGTGCAGG....................................................................................................................................................................2430.330.33---------------0.33---------------------------
........................................................................................................................................................................ATGGCTGGTAGAAAG...................................................................1590.110.11--------------0.11----------------------------

Antisense strand
GGCTTCCTTTGGGTGCAGGGCTGATCCCATAGGTCTTAGCCAGGGAGTGGCTTCCTCAGAGGGAGCTGGGCAGCAGGTGGTGCAGGACTAGAGCCGGGGCAGGAGTGGGTGCTGGTCCTGCACGCGGCTTCACCACACATTGTTTCAGGAGCTGCACACCATCTTCCCATGGCTGGTAGAAAGCATTTTTGGCAGCCTAGATGGTGTCCTCGTTGGCTGGAACCTCCGCTGCTTACAGGGGCGCGTGAAT
.....................................................................((....((((((((((((((((.(((...((....)).))).))))))))))))((((((((...((.....))....)))))))).)))).(((..(((....))).)))..))..................................................................
....................................................................69........................................................................................................................191.........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR189782SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
..................................................CTTCCTCAGAGGGAGCTGA..................................................................................................................................................................................... 191.000.00-----------------------1.00-------------------
.....................................................................................................................................................................................................................TGGCTGGAACCTCCGCTC................... 181.000.00-1.00-----------------------------------------
...................................................................................................................................................................................................CCTAGATGGTGTCCTAGGG.................................... 191.000.00-------------------1.00-----------------------
......................................................................................................................................................................TTCTACCAGCCATGG..................................................................... 1590.110.11----------------0.11--------------------------