ID: uc002tps.2_intron_9_0_chr2_128878873_f.5p
GENE: (10)
chr2:128878823-128879072+


(3)
AGO2.ip
(2)
B-CELL
(1)
BREAST
(13)
CELL-LINE
(2)
CERVIX
(3)
HEART
(3)
LIVER
(1)
OTHER
(5)
SKIN

Sense strand
GCTTTGGTTGTCATGAAGGATCTTAGTCAGAATTTTCCTACCAAAGCCAGGTAATGTAGAATAATGCTCTTCTCCTTAACATCATACCCAGTCATCGTCATGTTCACTTGCCAAATGAGGTAATAACAATATGAAAATTCCTAGAAAATTAAGATTCTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTTGTTGCCGAGGCTAGAGTGCAGTGGTGCAATCTCGGCTTACCACAACCTCCGCCTCCC
.........................................................................................................................................(((..((((((..((((......))))..))))))..))).........................................................................
...............................................................................................................112..................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM532888(GSM532888)
G761T. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR191430(GSM715540)
167genomic small RNA (size selected RNA from . (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
.........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGGGTT.......................................................................266.000.006.00-----------------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTTTTTTTAAGG........................................................................273.000.003.00-----------------------------
.........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGCAGG.......................................................................263.000.002.001.00----------------------------
.........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGCCGG.......................................................................262.000.00-1.00--1.00-------------------------
........................................................................................................................................................GATTCTTTTTTTTTTTTTTTTTGGG.........................................................................252.000.002.00-----------------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTTTTTTTAGGG........................................................................272.000.002.00-----------------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTTTTTTTGGGC........................................................................272.000.00-2.00----------------------------
.........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGGGGC.......................................................................262.000.002.00-----------------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTTTTGCC............................................................................231.000.001.00-----------------------------
......................................................................................................................................................AAGATTCTTTTTTTTTTTTTTGGG............................................................................241.000.001.00-----------------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTTTTTTTGAGAGGG.....................................................................301.000.001.00-----------------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTGGCG..............................................................................211.000.001.00-----------------------------
.........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGGAAG.......................................................................261.000.00-1.00----------------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTGGTG...............................................................................201.000.001.00-----------------------------
................AGGATCTTAGTCAGAATTT.......................................................................................................................................................................................................................1911.001.00-------------------------1.00----
.........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGGGCG.......................................................................261.000.001.00-----------------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTTTTTTTAAAA........................................................................271.000.001.00-----------------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTTTTTTTCAG.........................................................................261.000.00----------------------------1.00-
.......................................................................................................................................................AGATTCTTTTTTTTTTTTTTTTTGAC.........................................................................261.000.001.00-----------------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTTTTTTCTAC.........................................................................261.000.001.00-----------------------------
.............................GAATTTTCCTACCAAAGCCAGAGCA....................................................................................................................................................................................................251.000.00-----------1.00------------------
...................................................................................................................................................................................................................CAGTGGTGCAATCTCGGCTAAAG................231.000.00------------------------1.00-----
...............................................................................................................................................................................AGATGGAGTCTCACTCTTGTTGCCGAGGCC.............................................301.000.00-1.00----------------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTTTGTG.............................................................................221.000.00----------------------1.00-------
......................................................................................................................................................AAGATTCTTTTTTTTTTTTTTTTTGTT.........................................................................271.000.001.00-----------------------------
................AGGATCTTAGTCAGA...........................................................................................................................................................................................................................1521.001.00----------1.00-------------------
..........................................................................................................................................................................................................GCTAGAGTGCAGTGGTGCA.............................1901.001.00------------------1.00-----------
.........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGGACG.......................................................................261.000.001.00-----------------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTGGCG...............................................................................201.000.001.00-----------------------------
.....GGTTGTCATGAAGGATCTTA.................................................................................................................................................................................................................................2011.001.00---------------1.00--------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTTTTTTGGG..........................................................................251.000.001.00-----------------------------
.................GGATCTTAGTCAGAATTT.......................................................................................................................................................................................................................1811.001.00-----------------1.00------------
..........................................AAAGCCAGGTAATGTAGAATAATGC.......................................................................................................................................................................................2511.001.00-------------1.00----------------
........................................................................................................................................................................................................................................CCACAACCTCCGCCTCGCCC201.000.00-----1.00------------------------
.........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGGCGG.......................................................................261.000.001.00-----------------------------
........TGTCATGAAGGATCTTAGTCAGAATTTTCC....................................................................................................................................................................................................................3011.001.00--1.00---------------------------
...................................................................................................................................................................................................................CAGTGGTGCAATCTCGGCTTG..................211.000.00----------------1.00-------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTTTTTAAGG..........................................................................251.000.001.00-----------------------------
..........................................................................................................................................................TTCTTTTTTTTTTTTTTTTTGAGCAGC.....................................................................271.000.001.00-----------------------------
........................................................................................................................................................GATTCTTTTTTTTTTTTTTTTTGGGC........................................................................261.000.001.00-----------------------------
......................................................................................................................................................AAGATTCTTTTTTTTTTTTAGAC.............................................................................231.000.001.00-----------------------------
................................TTTTCCTACCAAAGCCAGAGAC....................................................................................................................................................................................................221.000.00--------------------1.00---------
............................AGAATTTTCCTACCAAAGCCAGAGCA....................................................................................................................................................................................................261.000.00---1.00--------------------------
.........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGACGCC......................................................................271.000.001.00-----------------------------
......................................................................................................................................................AAGATTCTTTTTTTTTTTTTTTTTCCTT........................................................................281.000.001.00-----------------------------
...............AAGGATCTTAGTCAGAA..........................................................................................................................................................................................................................1711.001.00------------1.00-----------------
..........TCATGAAGGATCTTAGTCAGAA..........................................................................................................................................................................................................................2211.001.00------1.00-----------------------
............ATGAAGGATCTTAGTCAGAA..........................................................................................................................................................................................................................2011.001.00-------------------1.00----------
....................................................................................................................GAGGTAATAACAATACAG....................................................................................................................181.000.00---------------------------1.00--
.........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGGAAC.......................................................................261.000.001.00-----------------------------
.........................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGGCTC.......................................................................261.000.001.00-----------------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTGGGG..............................................................................211.000.001.00-----------------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTTTTTTTGGAGA.......................................................................281.000.001.00-----------------------------
.........................................CAAAGCCAGGTAATGTAGAATAATGC.......................................................................................................................................................................................2611.001.00--1.00---------------------------
...........................CAGAATTTTCCTACCAAAGCCAGAGTT....................................................................................................................................................................................................271.000.00-------1.00----------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTTTTTTTAGTG........................................................................271.000.001.00-----------------------------
......................................................................................................................................................AAGATTCTTTTTTTTTTTTTTTTTGT..........................................................................261.000.001.00-----------------------------
..............................................................................................................................................................................................................................TCTCGGCTTACCACAACCTCGG......221.000.00-1.00----------------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTTTTTTTGTC.........................................................................261.000.001.00-----------------------------
.......................................................................................................................................................AGATTCTTTTTTTTTTTTTTTTGCC..........................................................................251.000.001.00-----------------------------
...............AAGGATCTTAGTCAGA...........................................................................................................................................................................................................................1620.500.50-----------------------------0.50
.......................................................................................................................................................................TTTTTTTGAGATGGAGTCTCACTCTTGTTGCCG..................................................3340.250.25----0.25-------------------------

Antisense strand
GCTTTGGTTGTCATGAAGGATCTTAGTCAGAATTTTCCTACCAAAGCCAGGTAATGTAGAATAATGCTCTTCTCCTTAACATCATACCCAGTCATCGTCATGTTCACTTGCCAAATGAGGTAATAACAATATGAAAATTCCTAGAAAATTAAGATTCTTTTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTTGTTGCCGAGGCTAGAGTGCAGTGGTGCAATCTCGGCTTACCACAACCTCCGCCTCCC
.........................................................................................................................................(((..((((((..((((......))))..))))))..))).........................................................................
...............................................................................................................112..................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM532888(GSM532888)
G761T. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040035(GSM532920)
G001T. (cervix)
SRR191430(GSM715540)
167genomic small RNA (size selected RNA from . (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
......................................................................................................................................................................................................CGAGGCTAGAGTGCAGTGGTGCAATTGAC....................... 292.000.00-2.00----------------------------
.........................................................................................................................................................................................................GGCTAGAGTGCAGTGGTGCAATGGCC....................... 261.000.001.00-----------------------------
.......................................................................................................................................AATTCCTAGAAAATTAGGT................................................................................................ 191.000.00--------------------------1.00---
........................................................................................................................................................................................................................................CCACAACCTCCGCCTCCCAGCT 221.000.00---1.00--------------------------
........................................................................................................................................................................................................................................CCACAACCTCCGCCTCAAT 191.000.00---------------------1.00--------
........................................................................................................................................................................................................................................CCACAACCTCCGCCTGGAT 191.000.00--------------1.00---------------
.........................................................................................................................................................................................................GGCTAGAGTGCAGTGGTGCAAGGC......................... 241.000.001.00-----------------------------
.....................................................................................................................................................................................................................GTGGTGCAATCTCGGCTAGCA................ 211.000.00-----------------------1.00------
.........................................................................................................................................................................................................GGCTAGAGTGCAGTGGTGCAATGGCG....................... 261.000.001.00-----------------------------
.........................................................................................................................................................................................................GGCTAGAGTGCAGTGGTGAGC............................ 211.000.00-1.00----------------------------
.......................................................................................................................................................................................................................................GGGAGGCGGAGGTTGTGGT 1901.001.00---------1.00--------------------
.........................................................................................................................................................................................................GGCTAGAGTGCAGTGGTGCAATGGGT....................... 261.000.001.00-----------------------------
.......................................................................................................................................................................................................................................ACCACAACCTCCGCCTTGC 191.000.00--------1.00---------------------
.........................................................................................................................................................................................................GGCTAGAGTGCAGTGGTGCAATGAGC....................... 261.000.001.00-----------------------------
.........................................................................................................................................................................................................GGCTAGAGTGCAGTGGTGCAATCGAC....................... 261.000.001.00-----------------------------