ID: uc002tpj.2_intron_1_0_chr2_128608260_r.3p
GENE: (2)
chr2:128608210-128608459-


(1)
AGO2.ip
(3)
BREAST
(7)
CELL-LINE
(2)
HEART
(1)
LIVER
(1)
OTHER
(7)
SKIN

Sense strand
TCGAACTCCTCACGTCAAGTGATTACCCACCTTGGCCTCTCAGAGTGCTGGAATTACAGGTGTGAGCCACTACACCTGGCCGTCTAGCTATTTTTAAATACTAGCTACGTTTGATCCCTTTTTTCCTGTTGATTACTCTTTGATTTTTGTTGTTTATTTGTTTTTGATTATTTTGATTTTTTTTTTTTCCTTTTGATTAGCTTGCTACTCCAGAAAAAGCTTCATAAGTTTGAGTTGGCCTGTTTGGCCA
....................................................................................................................................................................((((((....((...........))....))))))...................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR189786SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577744(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
.............................................................................................................................................................................TGATTTTTTTTTTTTCCTTTTGC......................................................233.000.00-3.00-----------------------
............................................................................................................................................................TTTGTTTTTGATTATTTTGATTTTTTTCTTT...............................................................313.000.00-3.00-----------------------
..............................................................................................................................................ATTTTTGTTGTTTATTTGTTTTTGACT.................................................................................273.000.00-3.00-----------------------
.........................................................................................................................................................................ATTTTGATTTTTTTTTTTTCCTTTTG.......................................................2613.003.003.00------------------------
...........................................................................................................................................................................................................GCTACTCCAGAAAAAGCTTCATA........................2313.003.00----3.00--------------------
...................................................................................................................................ATTACTCTTTGATTTTTGTTGTTTATTTGTTT.......................................................................................3212.002.001.001.00-----------------------
................................................................................................................................................................................TTTTTTTTTTTTCCTTTTGATTAGC.................................................2512.002.002.00------------------------
.......................................................................................................................................................................................TTTTTCCTTTTGATTAGCTTGC.............................................2212.002.002.00------------------------
..........................................................................................................................................TTTGATTTTTGTTGTTTATTTGTTCTTG....................................................................................282.000.00-2.00-----------------------
..............................................................................................................................................ATTTTTGTTGTTTATTTGTTTTTGAC..................................................................................262.000.002.00------------------------
...............................................................................................................................................................................ATTTTTTTTTTTTCCTTTTGAGACG..................................................252.000.001.001.00-----------------------
...........................................................................................................................................TTGATTTTTGTTGTTTATTTGTTTTT.....................................................................................2612.002.002.00------------------------
......................................................................................................................................................................ATTATTTTGATTTTTTTTTTTTCCTCTG........................................................281.000.001.00------------------------
..........................................................................................................................................TTTGATTTTTGTTGTTTATTTGTTTTTGACT.................................................................................311.000.001.00------------------------
................................................................................................................................................................................TTTTTTTTTTTTCCTTTTGATTTCCT................................................261.000.001.00------------------------
...............................................................................................................................................................................ATTTTTTTTTTTTCCTTCTTG......................................................211.000.00----------------------1.00--
.........................................................................................................................................................................................................................AGCTTCATAAGTTTGAGTTGGCC..........2311.001.00---------------------1.00---
...................................................................................................................................ATTACTCTTTGATTTTTTAA...................................................................................................201.000.00--1.00----------------------
......................................................................................................................................................................ATTATTTTGATTTTTTTTTTTTCCTTTT........................................................2811.001.00--1.00----------------------
..................................................................................................................................................TTGTTGTTTATTTGTTTTTGATTATTTG............................................................................281.000.001.00------------------------
......................................................................................................................................................................ATTATTTTGATTTTTTTTTTTTCCTTTCGAC.....................................................311.000.001.00------------------------
.......................................................................................................................................................................TTATTTTGATTTTTTTTTTAGT.............................................................221.000.001.00------------------------
................................................................................................................................................................................TTTTTTTTTTTTCCTTTTGGTTG...................................................231.000.001.00------------------------
.............................................................................................................................................................................TGATTTTTTTTTTTTCGAGG.........................................................201.000.00-1.00-----------------------
............................................................................................................................................................................................................................TTCATAAGTTTGAGTGT.............171.000.00-----------------------1.00-
............................................................................................................................................................................................................................TTCATAAGTTTGAGTTGGCC..........2011.001.00-----1.00-------------------
......................................................................................................................................................................ATTATTTTGATTTTTTTTTTTTTCC...........................................................251.000.001.00------------------------
...............................................................................................................................................................................ATTTTTTTTTTTTCCTTCCTA......................................................211.000.00-1.00-----------------------
.......................................................................................................................................................................................................................AAAGCTTCATAAGTTTGAGTTGGCCTGTTTGGC..3311.001.00-----------1.00-------------
..........................................................................................................................................TTTGATTTTTGTTGTTTATTTGTTTCTGA...................................................................................291.000.00-1.00-----------------------
..............................................................................................................................................................................GATTTTTTTTTTTTCCTTTTGATTAG..................................................2611.001.00-------------------1.00-----
..........................................................................................................................................................................TTTTGATTTTTTTTTTTTCGGG..........................................................221.000.00-1.00-----------------------
...................................................................................................................................ATTACTCTTTGATTTTTGCTGT.................................................................................................221.000.00--1.00----------------------
...............................................................................................................................................TTTTTGTTGTTTATTTGTTTTTGATTATC..............................................................................291.000.001.00------------------------
................................................................................................................................................................................TTTTTTTTTTTTCCTTTTGGGTT...................................................231.000.001.00------------------------
...........................................................................................................................................TTGATTTTTGTTGTTTATTTGTTTTCG....................................................................................271.000.001.00------------------------
.....................................................................................................................CTTTTTTCCTGTTGAAAG...................................................................................................................181.000.00---1.00---------------------
.............................................................................................................................................................................TGATTTTTTTTTTTTCGGTC.........................................................201.000.001.00------------------------
.............................................................................................................................................................................TGATTTTTTTTTTTTCCTTTTGATC....................................................251.000.001.00------------------------
..............................................................................................................................................................TGTTTTTGATTATTTTGATTTTTTTTTTT...............................................................2911.001.00-1.00-----------------------
............................................................................................................................................TGATTTTTGTTGTTTATTTGTTTCTGA...................................................................................271.000.001.00------------------------
............................................................TGTGAGCCACTACACCTGGAGA........................................................................................................................................................................221.000.00----------1.00--------------
......................................................................................................AGCTACGTTTGATCCCTTTTCCTG............................................................................................................................241.000.001.00------------------------
......................................................................................................................................................................................................................AAAAGCTTCATAAGTTTGAGTTGGCCTG........2811.001.00-1.00-----------------------
...............................................................................................................................................................................ATTTTTTTTTTTTCCTTTTGC......................................................211.000.00--1.00----------------------
...............................................................................................................................................................................ATTTTTTTTTTTTCCTTTTGATTCGC.................................................261.000.00-------1.00-----------------
............................................................................................................................................................................TTGATTTTTTTTTTTTCCTTTAGA......................................................241.000.00-1.00-----------------------
..........................................................................................................ACGTTTGATCCCTTTTTTCCTGTTGATC....................................................................................................................281.000.00-1.00-----------------------
..............................................................................................................................................ATTTTTGTTGTTTATTTGTTTTTGCTC.................................................................................271.000.001.00------------------------
.....................................................................................................................................................................................................................................TTGAGTTGGCCTGTTTG....1711.001.00--------1.00----------------
...........................................................................................................................................................................TTTGATTTTTTTTTTTTCCTTTTAA......................................................251.000.00-1.00-----------------------
..............................................................................................................................................ATTTTTGTTGTTTATTTGTTTCTG....................................................................................241.000.00-1.00-----------------------
....................................................................................................................................................................................TTTTTTTTCCTTTTGATTTCCT................................................221.000.001.00------------------------
.............................................................................................................................................................................TGATTTTTTTTTTTTCCTGGG........................................................211.000.00-1.00-----------------------
...............................................................................................................................................................................ATTTTTTTTTTTTCCTTTTGATGGAG.................................................261.000.00--1.00----------------------
.................................................................................................................................................................TTTTGATTATTTTGATTTTTTTTTTTTCCTT..........................................................3111.001.00-1.00-----------------------
.............................................................................................................................................................................TGATTTTTTTTTTTTCCTGTC........................................................211.000.00------------------1.00------
.......................................................................................................................................................................TTATTTTGATTTTTTTTTTTTCCTTTGAA......................................................291.000.001.00------------------------
..............................................................................................................................................................TGTTTTTGATTATTTTGATTTTTTTTTTTCCC............................................................3211.001.001.00------------------------
...................................................................................................................................................................................................................................GTTTGAGTTGGCCTGTTTGGCTCTG251.000.00-----------------1.00-------
................................................................................................................................................................................TTTTTTTTTTTTCCTTTTGACG....................................................221.000.00-1.00-----------------------
................................................................................................................................................................TTTTTGATTATTTTGATTTTTTTTTTTTCCCTT.........................................................331.000.001.00------------------------
.................................................................................................................................................................................TTTTTTTTTTTCCTTTTGATGGAC.................................................241.000.001.00------------------------
...................................................................................................................CCCTTTTTTCCTGTTGCTAT...................................................................................................................201.000.00---1.00---------------------
..............................................................................................................................................................TGTTTTTGATTATTTTGATTTTTTCC..................................................................261.000.001.00------------------------
...............................................................................................................................................................................................................................ATAAGTTTGAGTTGGCCTGT.......2011.001.00---------------1.00---------
.................................................................................................................................................................................TTTTTTTTTTTCCTTTTGATTTCTC................................................251.000.001.00------------------------
.................................................................................................................................................................................TTTTTTTTTTTCCTTTTGAATGG..................................................231.000.00-1.00-----------------------
........................................................................................................................................................TTTATTTGTTTTTGATTATTTTGATTTTTTTTT.................................................................3311.001.001.00------------------------
...............................................................................................................................................................................ATTTTTTTTTTTTCCTTTTGAACT...................................................241.000.00---1.00---------------------
.......................................................................................................................................................................................................GCTTGCTACTCCAGAAAAAGC..............................2111.001.00-----1.00-------------------
..............................................................................................................................................ATTTTTGTTGTTTATTTGTTTTTGATCATT..............................................................................301.000.001.00------------------------
......................................................................................................................................................................ATTATTTTGATTTTTTTCCTC...............................................................211.000.001.00------------------------
..........................................................................................................................................................................TTTTGATTTTTTTTTTTTCCTTTTG.......................................................2511.001.001.00------------------------
..........................................................................................................................................................................TTTTGATTTTTTTTTTTTCAAG..........................................................221.000.001.00------------------------
............................................................................................................................................TGATTTTTGTTGTTTATTTGTTTTCGA...................................................................................271.000.001.00------------------------
.................................................................................................................ATCCCTTTTTTCCTGTTGATT....................................................................................................................2111.001.00------1.00------------------
...............................TTGGCCTCTCAGAGTGCTGGAACTGC.................................................................................................................................................................................................261.000.00-1.00-----------------------
............................................................................................................................................TGATTTTTGTTGTTTATTTGTTTTTGAC..................................................................................281.000.00-1.00-----------------------
...............................................................................................................................................................................ATTTTTTTTTTTTCCTTTTGATTAGCTCG..............................................291.000.00--1.00----------------------
.....................................................................................................................CTTTTTTCCTGTTGACAAG..................................................................................................................191.000.00----------------1.00--------
.........................................................................................................................................................................ATTTTGATTTTTTTTTTAGCC............................................................211.000.00-------1.00-----------------
.........................................................................................................................................................................ATTTTGATTTTTTTTTTTTCGA...........................................................221.000.001.00------------------------
..........................................................................................................................................................................TTTTGATTTTTTTTTTTTCAGC..........................................................221.000.001.00------------------------
......................................................................................................................................................................ATTATTTTGATTTTTTTTTTTTTCCT..........................................................261.000.001.00------------------------
...............................................................................................................................................................................................TTTGATTAGCTTGCTGTTC........................................191.000.00-------------1.00-----------
....................................................................................................................................TTACTCTTTGATTTTTGTTGTTTACTTG..........................................................................................281.000.001.00------------------------
.......................................................................................................................................................................TTATTTTGATTTTTTTTTTTTCTTAG.........................................................261.000.00-1.00-----------------------
.....................................................................................................................................................TTGTTTATTTGTTTTTGATTATTTCGA..........................................................................271.000.001.00------------------------
...AACTCCTCACGTCAAGTG.....................................................................................................................................................................................................................................1880.120.12-----0.12-------------------

Antisense strand
TCGAACTCCTCACGTCAAGTGATTACCCACCTTGGCCTCTCAGAGTGCTGGAATTACAGGTGTGAGCCACTACACCTGGCCGTCTAGCTATTTTTAAATACTAGCTACGTTTGATCCCTTTTTTCCTGTTGATTACTCTTTGATTTTTGTTGTTTATTTGTTTTTGATTATTTTGATTTTTTTTTTTTCCTTTTGATTAGCTTGCTACTCCAGAAAAAGCTTCATAAGTTTGAGTTGGCCTGTTTGGCCA
....................................................................................................................................................................((((((....((...........))....))))))...................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189782SRR189786SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
TAX577744(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
...........................................AGTGCTGGAATTACAGGTGTGAGGGG..................................................................................................................................................................................... 262.000.00--2.00----------------------
...................................CAGCACTCTGAGAGG........................................................................................................................................................................................................ 1501.001.00--------------1.00----------
.........................CCCACCTTGGCCTCTCAGAGTGCTGGCAA.................................................................................................................................................................................................... 291.000.001.00------------------------
..........................CCACCTTGGCCTCTCAGAGTGCTC........................................................................................................................................................................................................ 241.000.001.00------------------------
.............................CCTTGGCCTCTCAGAGTGCTGGAAGGGG................................................................................................................................................................................................. 281.000.00-1.00-----------------------
..................................................................................................................................GATTACTCTTTGATTTGC...................................................................................................... 181.000.00--1.00----------------------
....................................................................................................................................................GTTGTTTATTTGTTTTCCG................................................................................... 191.000.00---1.00---------------------
......................................................................................................................TTTTTTCCTGTTGATTTTG................................................................................................................. 191.000.00------1.00------------------
...................................................................CACTACACCTGGCCGACGA.................................................................................................................................................................... 191.000.00---------1.00---------------
................................TGGCCTCTCAGAGTGCTGCGGA.................................................................................................................................................................................................... 221.000.00------------1.00------------
...........................................AGTGCTGGAATTACAGGTGTGAGCCACGGG................................................................................................................................................................................. 301.000.00-1.00-----------------------
.CGAACTCCTCACGTCGAT....................................................................................................................................................................................................................................... 181.000.00--------------------1.00----
.........................CCCACCTTGGCCTCTCAGAGTGCTGGAAGG................................................................................................................................................................................................... 301.000.00-1.00-----------------------
.........................CCCACCTTGGCCTCTCAGAGTGCTGGAATCA.................................................................................................................................................................................................. 311.000.00-1.00-----------------------
................GGTGGGTAATCACTT........................................................................................................................................................................................................................... 1550.200.20------------------------0.20