ID: uc002tou.2_intron_2_0_chr2_128397894_r.3p
GENE: (2)
chr2:128397844-128398093-


(1)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(3)
CELL-LINE 		(5)
CERVIX 		(4)
HEART 		(6)
HELA 		(5)
LIVER 		(4)
OTHER 		(9)
SKIN

Sense strand
CCCCAGCCTGTTGTCCTTCCCGGAAGGGTGGTTCTCATGGGTTGCCGTGCCCTCAACCCAGCCTTGCAGCTGGGCCCTGGGAGGCAGGGCCTGGGAGATGCCTGAGAGGGGCCGTGTTGGAGGGCCAGGCTGGCTGCATGATGGCCCTGGGCTGGGGTGTGACTGCCTGCAGCTACTCTGACAGCCTGCTCGGCCCACAGCTCTTCGGGGACGTCTGCTACAACTGCAGCCATGTGATTGAAGGCGATGG
.............................................((.((..(((.(((((((..(((.((((((((((.....))))))))))....)))......((((((((..((...((((.....)))).))..)))))))).)))))))...)))..)).)).................................................................................
............................................45...........................................................................................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormDRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR040008(GSM532893)
G727N. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040036(GSM532921)
G243N. (cervix)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR343334SRR040018(GSM532903)
G701N. (cervix)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR040031(GSM532916)
G013T. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335SRR189786TAX577589(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
.....................................................................................................................................CTGCATGATGGCCCTGGGCTGGGGTGTGACTGCCTGCAGCTACTCTGACA...................................................................501117.00117.0055.0049.008.005.00---------------------------------------
....................................................................................................................................GCTGCATGATGGCCCTGGGCTGGGGTGTGACTGCCTGCAGCTACTCTGACAGCC................................................................5418.008.006.001.001.00----------------------------------------
................................................................................................................................................CCCTGGGCTGGGGTGTGACTGC....................................................................................2213.003.00----2.00-------------------------------1.00------
........................................................................................................................................................................................................................................TGTGATTGAAGGCGATG.1713.003.00----------1.00-------------1.00----1.00-------------
.................................................CCCTCAACCCAGCCTTTTCC.....................................................................................................................................................................................202.000.00--------------1.00---------------1.00------------
.....................................................................................................................................CTGCATGATGGCCCTGGGCTGGGGTGTGACTGCCTGCAGCTACTCTGACAGC.................................................................5212.002.00-2.00-----------------------------------------
.....................................................................................................................................CTGCATGATGGCCCTGGGCTGGGGTGTGACTGCCTGCAGCTACTCTGAC....................................................................4912.002.002.00------------------------------------------
......................................................................................................................................TGCATGATGGCCCTGGGCTGGGGTGTGACTGCCTGCAGCTACTCTGACA...................................................................4912.002.00-2.00-----------------------------------------
..................................................................................................................................................................................................................................CAGCCATGTGATTGAAGG......1811.001.00------1.00------------------------------------
........................................................................................................................................................................................................................................TGTGATTGAAGGCGATGTG1911.003.00-----------1.00-------------------------------
...........................................................................................................................................................................GCTACTCTGACAGCCTGCTCGGCCCA.....................................................2611.001.00-----------------------------------1.00-------
.....................................................................................................................................CTGCATGATGGCCCTGGGCTGGGGTGTGACTGCCTGCAGCTACTCTGCCA...................................................................501.000.00-1.00-----------------------------------------
.......................................................................................................................................................................................................GCTCTTCGGGGACGTCTGC................................1911.001.00-----1.00-------------------------------------
.....................................................................................................................................................................................................CAGCTCTTCGGGGACGTC...................................1811.001.00-----1.00-------------------------------------
......................................................................................................................................................................................................AGCTCTTCGGGGACGTCTGCT...............................2111.001.00---------------------------------------1.00---
.....................................................................................................................................CTGCATGATGGCCCTGGGCTGGGGTGTGACTGCCTGCAGCTACTCTGACAGAGCC..............................................................551.000.001.00------------------------------------------
.............................................................................................................................................................................................................CGGGGACGTCTGCTACAACTG........................2111.001.00--------------------------------1.00----------
...........................................................................................................................................................GGTGTGACTGCCTGCTCTG............................................................................191.000.00-----------------1.00-------------------------
................................................................................................................................................CCCTGGGCTGGGGTGTGACTGCAA..................................................................................2411.003.00----------------1.00--------------------------
..................................................................................................................................................................CTGCCTGCAGCTACTCTGACAGC.................................................................2311.001.00-----------------------1.00-------------------
.....................................................................................................................................................................................................................................CCATGTGATTGAAGGCGATG.2011.001.00------------1.00------------------------------
...................................................................................................................................................TGGGCTGGGGTGTGATAAC....................................................................................191.000.00--------------------------------------1.00----
..........................................................................................................................................TGATGGCCCTGGGCTGGGGT............................................................................................2011.001.00---------------------1.00---------------------
.....................................................................................................................................CTGCATGATGGCCCTGGGCTGGGGTGTGACTGC....................................................................................3311.001.00-------------1.00-----------------------------
...................................................................................................................................................TGGGCTGGGGTGTGACAGCC...................................................................................201.000.00----------------------------------1.00--------
...........................................................................................................................GCCAGGCTGGCTGCATGATGGC.........................................................................................................2211.001.00--------------------1.00----------------------
...........................................................................................................................................................................................................TTCGGGGACGTCTGCTACAACTGCAGCCATGTG..............3311.001.00----------1.00--------------------------------
............................................................................................................................................................GTGTGACTGCCTGCAGCTACTCTGACAGC.................................................................2911.001.00---------1.00---------------------------------
......................................................................................................................................................................................................AGCTCTTCGGGGACGTCTGCTAC.............................2311.001.00----------------------------1.00--------------
.....................................................................................................................................CTGCATGATGGCCCTGG....................................................................................................1711.001.00---------1.00---------------------------------
..............................................................................................................................................................................................................................ACTGCAGCCATGTGATTGAAGGCGAT..2611.001.00---------------------------------1.00---------
.......................................................................................................................................................................................................GCTCTTCGGGGACGTCTGCTACAACTGCA......................2911.001.00---------------------------1.00---------------
......................................................................................................................................................................................................AGCTCTTCGGGGACGTCT..................................1811.001.00-----------1.00-------------------------------
..............................................................................................................GCCGTGTTGGAGGGCCAGG.........................................................................................................................1911.001.00----1.00--------------------------------------
................................................................................................................................................................................................................................TGCAGCCATGTGATTGAAGG......2011.001.00------1.00------------------------------------
.................................................................GCAGCTGGGCCCTGGGA........................................................................................................................................................................1720.500.50----------------------------------------0.50--
............................................................................................................................................................GTGTGACTGCCTGCAGC.............................................................................1730.330.33----0.33--------------------------------------

Antisense strand
CCCCAGCCTGTTGTCCTTCCCGGAAGGGTGGTTCTCATGGGTTGCCGTGCCCTCAACCCAGCCTTGCAGCTGGGCCCTGGGAGGCAGGGCCTGGGAGATGCCTGAGAGGGGCCGTGTTGGAGGGCCAGGCTGGCTGCATGATGGCCCTGGGCTGGGGTGTGACTGCCTGCAGCTACTCTGACAGCCTGCTCGGCCCACAGCTCTTCGGGGACGTCTGCTACAACTGCAGCCATGTGATTGAAGGCGATGG
.............................................((.((..(((.(((((((..(((.((((((((((.....))))))))))....)))......((((((((..((...((((.....)))).))..)))))))).)))))))...)))..)).)).................................................................................
............................................45...........................................................................................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormDRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR040008(GSM532893)
G727N. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR040036(GSM532921)
G243N. (cervix)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR343334SRR040018(GSM532903)
G701N. (cervix)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR040037(GSM532922)
G243T. (cervix)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR040031(GSM532916)
G013T. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343335SRR189786TAX577589(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
...................................................CTCAACCCAGCCTTGAGGG.................................................................................................................................................................................... 192.000.00-------------------1.00--1.00--------------------
...................................................CTCAACCCAGCCTTGAGG..................................................................................................................................................................................... 182.000.00-------1.00------------------1.00----------------
........................................................................................................................................................................................GAGCTGTGGGCCGAGCAGG............................................... 1912.002.00--------2.00----------------------------------
.................................................CCCTCAACCCAGCCTTGCGA..................................................................................................................................................................................... 201.000.00-------------------------------1.00-----------
..................................................CCTCAACCCAGCCTTCTC...................................................................................................................................................................................... 181.000.00-------------------------------------1.00-----
.................................................CCCTCAACCCAGCCTTGTCG..................................................................................................................................................................................... 201.000.00---------------1.00---------------------------
...................................................CTCAACCCAGCCTTGAGCG.................................................................................................................................................................................... 191.000.00-------1.00-----------------------------------
.................................................CCCTCAACCCAGCCTTGG....................................................................................................................................................................................... 181.000.00-----1.00-------------------------------------
................................................GCCCTCAACCCAGCCTGA........................................................................................................................................................................................ 181.000.00-------------------------1.00-----------------
..CCAGCCTGTTGTCCTAATA..................................................................................................................................................................................................................................... 191.000.00------------------1.00------------------------
.................................................................CTCCCAGGGCCCAGCTGC....................................................................................................................................................................... 1820.500.50-----------------------------------------0.50-
.AGGACAACAGGCTGGG......................................................................................................................................................................................................................................... 1670.140.14------------0.14------------------------------