ID: uc002thz.1_intron_1_0_chr2_113343692_f
GENE: CHCHD5(2)
chr2:113343642-113343826+


(1)
AGO1.ip 		(1)
AGO2.ip 		(2)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(13)
CELL-LINE 		(7)
HEART 		(2)
HELA 		(4)
LIVER 		(2)
OTHER 		(18)
SKIN 		(1)
XRN.ip

Sense strand
CGGGACTGTCACTACCTTAAGATGAGCATTGCCCAGTGCACATCCTCCCAGTGAGTGCGGGCAAGTATGAGACAGTGTGGGGGGTGGGCAGTGGGGTGGGAATCTCCCAGGGGCTGAACTGCCCTACCCCCACAGCCCAATCATCCGCCAGATCCGCCAGGCCTGTGCTCAGCCTTTTGAGGCCT
..................................................((..((((......))))...))..((((((((..(((((((..((((((.....)))....)))..)))))))..))))))))...................................................
..................................................51..................................................................................135................................................
SizePerfect hitTotal NormPerfect NormSRR029127(GSM416756)
A549. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189782SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................................................TGAACTGCCCTACCCCCACAGT.................................................22119.0011.00-----1.002.001.00-2.00-1.001.002.00-1.001.001.00-----------1.00---1.00------1.00-1.00--1.00---1.00------
..................................................................................................................TGAACTGCCCTACCCCCACAG..................................................21111.0011.00-1.001.00-1.00-1.001.00--1.00---2.00----1.001.00--------------------------1.00--------
..................................................................................................................TGAACTGCCCTACCCCCACAGA.................................................2219.0011.00-1.001.00--2.00------1.00--1.001.00--------------------1.00------1.00-----------
..................................................................................................................TGAACTGCCCTACCCCCACAGTAT...............................................2415.0011.005.00-------------------------------------------------------
.................................................................................................................CTGAACTGCCCTACCCCCACAGT.................................................2314.001.00--1.00--------------1.00------1.00--------------1.00----------------
.................................................................................................................CTGAACTGCCCTACCCCCACAGA.................................................2313.001.00--------------------------1.00----1.00----------------1.00-------
................TTAAGATGAGCATTGCCCAGTGCA.................................................................................................................................................2412.002.00---2.00----------------------------------------------------
...GACTGTCACTACCTTAAGATGAGCATTGC.........................................................................................................................................................2912.002.00--------2.00-----------------------------------------------
..................................................GTGAGTGCGGGCAAGTATGAGACAGTGTGGGGGGTGGGCAGTGGGGTGGGAATCTCCCAGGGGCTGAACTGCCCTACCCCCACAG..................................................8512.002.00------------------2.00-------------------------------------
.........................................................................................................CCCAGGGGCTGAACTCTG..............................................................182.000.00----------1.00-----------------------------------------1.00---
..................................................................................................................TGAACTGCCCTACCCCCACA...................................................2011.001.00----1.00---------------------------------------------------
......................................................GTGCGGGCAAGTATGAGACAG..............................................................................................................2111.001.00--------------------------------1.00-----------------------
.............................................TCCCAGTGAGTGCGG.............................................................................................................................1511.001.00-----------------------1.00--------------------------------
.............................................................................TGGGGGGTGGGCAGTGGGGTGC......................................................................................221.000.00-------1.00------------------------------------------------
.................................................................................................................CTGAACTGCCCTACCCCCACAG..................................................2211.001.00-----------1.00--------------------------------------------
..................................................................................................................TGAACTGCCCTACCCCCAC....................................................1911.001.00------------------------------1.00-------------------------
.......GTCACTACCTTAAGATGAGCA.............................................................................................................................................................2111.001.00-1.00------------------------------------------------------
...................................................................................................................GAACTGCCCTACCCCCCCAG..................................................201.000.00-------------------------1.00------------------------------
..................................AGTGCACATCCTCCCACC.....................................................................................................................................181.000.00---------------------------------------------------1.00----
..................................................................................................................TGAACTGCCCTACCCCCACAGAA................................................2311.0011.00----------------------------------------------1.00---------
..................................................................................................................TGAACTGCCCTACCCCCA.....................................................1811.001.00----------------------------------1.00---------------------
.......................................................................ACAGTGTGGGGGGTGGGACC..............................................................................................201.000.00-------------------------------------------1.00------------
.................................................................................................................CTGAACTGCCCTACCCCCATAGA.................................................231.000.00----------------------1.00---------------------------------
.................................................................................................................CTGAACTGCCCTACCCCCACT...................................................211.000.00-1.00------------------------------------------------------
...................................................................................................................GAACTGCCCTACCCCCACAGT.................................................211.000.00------------------------------------1.00-------------------
..........................................................................GTGTGGGGGGTGGGCAGTGGCG.........................................................................................221.000.00-----------------------------------1.00--------------------
.GGGACTGTCACTACCTTAAGATGAGCA.............................................................................................................................................................2711.001.00---1.00----------------------------------------------------
........................................................................................................................GCCCTACCCCCACAGCC................................................1711.001.00--------------------------------------------------1.00-----
..............................................................................GGGGGGTGGGCAGTGGGGTTTTG....................................................................................231.000.00---------------------1.00----------------------------------
.............................................................................TGGGGGGTGGGCAGTGGGGCG.......................................................................................211.000.00-----------------------------------------1.00--------------
...................................................................................................................GAACTGCCCTACCCCCACAGTA................................................221.000.00----------------------------1.00---------------------------
.....................................................AGTGCGGGCAAGTATGAGACA...............................................................................................................2111.001.00------------------------------------------------------1.00-
............................................................................GTGGGGGGTGGGCAGTGG...........................................................................................1860.330.33-0.33------------------------------------------------------
..............................................CCCAGTGAGTGCGGG............................................................................................................................1550.200.20-------------------------------------------------------0.20

Antisense strand
CGGGACTGTCACTACCTTAAGATGAGCATTGCCCAGTGCACATCCTCCCAGTGAGTGCGGGCAAGTATGAGACAGTGTGGGGGGTGGGCAGTGGGGTGGGAATCTCCCAGGGGCTGAACTGCCCTACCCCCACAGCCCAATCATCCGCCAGATCCGCCAGGCCTGTGCTCAGCCTTTTGAGGCCT
..................................................((..((((......))))...))..((((((((..(((((((..((((((.....)))....)))..)))))))..))))))))...................................................
..................................................51..................................................................................135................................................
SizePerfect hitTotal NormPerfect NormSRR029127(GSM416756)
A549. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189782SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................CTGCCCTACCCCCACAGGCG............................................... 201.000.00----1.00---------------------------------------------------
...........................................................................................................................................ATCATCCGCCAGATCCGCCAGGA....................... 231.000.00---------------------------1.00----------------------------
...............................................................................................................................................GGCCTGGCGGATCTGGCGGA...................... 2011.001.00--------------------------------------1.00-----------------