ID: uc002ths.1_intron_21_0_chr2_113181885_r.5p
GENE: (1)
chr2:113190759-113191008-


(3)
AGO2.ip
(7)
BREAST
(16)
CELL-LINE
(2)
CERVIX
(1)
LIVER
(2)
OTHER
(23)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TGGAGCGGTACGTCGCCTCGGTGCTGGGTCTCACCCCGTCGCCTCGACAGGTGAGTGGGTCTGGAAGAGAGCGGCGGCCTCGACCCGGCCGGGCGGCGGCGGCCTCGACCCGGCCCGGCGGCGGCCTCGATGGGTCAGGGGTCATGGCTCCCGACGGGCGCTGCTCCCTGGCGCGCTCTGTTGAGGCGGCGGCCTCCACCCGGCCCGGCGGCGGCCTCGATGGGTCAGGGGTCATGGCTCCCGACGGGCG
.................................................................................((((((..(((((.((.((((((.......))))..)).)).))).)).)))))).((((...((((.(((...))).))))..)))).................................................................................
................................................................................81.......................................................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormSRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
TAX577744(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
.....................................................................................CGGCCGGGCGGCGGCGGTCGG................................................................................................................................................219.000.00--2.00---1.001.00----1.00------1.00------1.00--------------1.00-1.00--------
....................................................................................................................................................TCCCGACGGGCGCTGACC....................................................................................184.000.00----------------------1.001.00---1.00--1.00---------------------
.....................................................................................CGGCCGGGCGGCGGCGGTCG.................................................................................................................................................204.000.00---1.001.00----1.00-----------------------------1.00------------
.....................................................................................CGGCCGGGCGGCGGCGGTC..................................................................................................................................................193.000.00-------1.00--------------------1.00--------1.00--------------
......................................................................................GGCCGGGCGGCGGCGGTCGG................................................................................................................................................203.000.00--2.00-------------------------------1.00-----------------
....................................................................................................................................................TCCCGACGGGCGCTGACCC...................................................................................193.000.00------1.00----1.001.00---------------------------------------
....................................................................................................................................................TCCCGACGGGCGCTGAC.....................................................................................173.000.00----1.00-1.00-------------------------------1.00-------------
.......................................................................................GCCGGGCGGCGGCGGTCGG................................................................................................................................................1902.001.00--1.00------------1.00------------------------------------
................................................................................................................GCCCGGCGGCGGCCTTCGC.......................................................................................................................192.000.00--2.00-------------------------------------------------
......................................................................................GGCCGGGCGGCGGCGGTC..................................................................................................................................................182.000.00---------1.00---------------------1.00--------------------
............................................................................................................................................GTCATGGCTCCCGACGGG............................................................................................1802.002.00----------2.00-----------------------------------------
....................................................................................................................................................TCCCGACGGGCGCTGA......................................................................................161.000.00-----------------------------------1.00----------------
..........................................................................................GGGCGGCGGCGGCCTAAA..............................................................................................................................................181.000.00--------------1.00-------------------------------------
.......................................................................................GCCGGGCGGCGGCGG....................................................................................................................................................1501.001.00-----1.00----------------------------------------------
.....................................................................................CGGCCGGGCGGCGGCGGGCGG................................................................................................................................................211.000.00---1.00------------------------------------------------
..............................................................................................................................................................................GCTCTGTTGAGGCGGGGGC.........................................................191.000.00--------1.00-------------------------------------------
..........................................................................................GGGCGGCGGCGGCCTGCGG.............................................................................................................................................191.000.00--------------------1.00-------------------------------
.....................................................................................CGGCCGGGCGGCGGCGGTCGA................................................................................................................................................211.000.00-------1.00--------------------------------------------
...................................................................................CCCGGCCGGGCGGCGGGC.....................................................................................................................................................181.000.00-----------1.00----------------------------------------
..................................................................................................................................................................................TGTTGAGGCGGCGGC.........................................................1501.001.00-----1.00----------------------------------------------
..........................................................GTCTGGAAGAGAGCGGCGG.............................................................................................................................................................................1911.001.00---------------------------------1.00------------------
.......................................................................................................................................................CGACGGGCGCTGCTCCCCTTC..............................................................................211.000.00-------------------------1.00--------------------------
......................................................................................GGCCGGGCGGCGGCGGTTCG................................................................................................................................................201.000.00------------------------------------------1.00---------
...AGCGGTACGTCGCCTCGGTGCCGGG..............................................................................................................................................................................................................................251.000.00-----------------------------1.00----------------------
.....................................................................................CGGCCGGGCGGCGGCGGTTGG................................................................................................................................................211.000.00---1.00------------------------------------------------
..................................................................................................................................................................................................TCCACCCGGCCCGGCGGT......................................181.000.00------------------1.00---------------------------------
............................................................................................GCGGCGGCGGCCTCGCTGG...........................................................................................................................................191.000.00---1.00------------------------------------------------
.........................................................................................CGGGCGGCGGCGGCCCGGC..............................................................................................................................................191.000.00-1.00--------------------------------------------------
.................................................................................................................CCCGGCGGCGGCCTCGATGGGTC..................................................................................................................2340.500.50--------------------------------------------0.50-------
.............................................................TGGAAGAGAGCGGCGGC............................................................................................................................................................................1720.500.50---------------------------------------------0.50------
......GGTACGTCGCCTCGGTGCTGGGTCTCACCCCGT...................................................................................................................................................................................................................3330.330.33--0.33-------------------------------------------------
.............CGCCTCGGTGCTGGG..............................................................................................................................................................................................................................1550.200.20-------------------------------------------------0.20--
.GGAGCGGTACGTCGCCTCGG.....................................................................................................................................................................................................................................2050.200.20--------------0.20-------------------------------------
....................................................................................CCGGCCGGGCGGCGGCG.....................................................................................................................................................1770.140.14--------------------------------------------------0.14-
................................................AGGTGAGTGGGTCTGG..........................................................................................................................................................................................1690.110.11---------------------------------------------------0.11

Antisense strand
TGGAGCGGTACGTCGCCTCGGTGCTGGGTCTCACCCCGTCGCCTCGACAGGTGAGTGGGTCTGGAAGAGAGCGGCGGCCTCGACCCGGCCGGGCGGCGGCGGCCTCGACCCGGCCCGGCGGCGGCCTCGATGGGTCAGGGGTCATGGCTCCCGACGGGCGCTGCTCCCTGGCGCGCTCTGTTGAGGCGGCGGCCTCCACCCGGCCCGGCGGCGGCCTCGATGGGTCAGGGGTCATGGCTCCCGACGGGCG
.................................................................................((((((..(((((.((.((((((.......))))..)).)).))).)).)))))).((((...((((.(((...))).))))..)))).................................................................................
................................................................................81.......................................................................................170..............................................................................
SizePerfect hitTotal NormPerfect NormSRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
TAX577744(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR029125(GSM416754)
U2OS. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR040010(GSM532895)
G529N. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189785SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)
TAX577740(Rovira)
total RNA. (breast)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
.......................................................................................................................................................................................................CCGGCCCGGCGGCGGCGCG................................ 196.000.006.00---------------------------------------------------
.............................................................................................................CCGGCCCGGCGGCGGCCGC.......................................................................................................................... 194.000.004.00---------------------------------------------------
.......................................................................................................................................................................................................CCGGCCCGGCGGCGGCGGG................................ 194.000.00-4.00--------------------------------------------------
..............................................................................................................CGGCCCGGCGGCGGCCCA.......................................................................................................................... 182.000.00-------------2.00--------------------------------------
.............................................................................................................CCGGCCCGGCGGCGGCCGGC......................................................................................................................... 202.000.002.00---------------------------------------------------
.............................................................................................................CCGGCCCGGCGGCGGCCGCG......................................................................................................................... 202.000.002.00---------------------------------------------------
............................................................................................................CCCGGCCCGGCGGCGGGGGT.......................................................................................................................... 202.000.00-2.00--------------------------------------------------
.............................................................................................................CCGGCCCGGCGGCGGCCG........................................................................................................................... 182.000.00---2.00------------------------------------------------
............................................................................................................CCCGGCCCGGCGGCGGCGGA.......................................................................................................................... 202.000.00-2.00--------------------------------------------------
...............................................................................................................GGCCCGGCGGCGGCCCCTT........................................................................................................................ 192.000.00----2.00-----------------------------------------------
..............................................................................................................CGGCCCGGCGGCGGCCCGG......................................................................................................................... 192.000.00-2.00--------------------------------------------------
.............................................................................................................CCGGCCCGGCGGCGGCGCC.......................................................................................................................... 192.000.002.00---------------------------------------------------
..................................................................................................................................................................ACAGAGCGCGCCAGGGAGC..................................................................... 1902.002.00-----1.00-----------1.00----------------------------------
............................GTCGAGGCGACGGGGTGAGA.......................................................................................................................................................................................................... 2031.671.67--------1.67-------------------------------------------
......................................................................................................................................................................................GAGGCGGCGGCCTCCGG................................................... 171.000.00------------------------------------1.00---------------
.......................................................................................GCCGGGCGGCGGCGGCGGCG............................................................................................................................................... 201.000.001.00---------------------------------------------------
.........................................................................................................CGACCCGGCCCGGCGGCCC.............................................................................................................................. 191.000.00------------------------1.00---------------------------
..................................................GTGAGTGGGTCTGGAATG...................................................................................................................................................................................... 181.000.00----------------1.00-----------------------------------
..................CGGTGCTGGGTCTCAGACC..................................................................................................................................................................................................................... 191.000.00---1.00------------------------------------------------
....................................................CCGCTCTCTTCCAGACCCACTC................................................................................................................................................................................ 2211.001.00---------------------1.00------------------------------
.......................................................................................GCCGGGCGGCGGCGGCACGC............................................................................................................................................... 201.000.001.00---------------------------------------------------
.....................................................................................CGGCCGGGCGGCGGCGGCCGCG............................................................................................................................................... 221.000.00----------------------------------------1.00-----------
................................................................................CGACCCGGCCGGGCGT.......................................................................................................................................................... 161.000.00--------------------------------1.00-------------------
...........................................................................................................................................GCAGCGCCCGTCGGGAGCCATGACC...................................................................................... 2520.500.50----------------------------------------------0.50-----
.......................................................................................................................CCCCTGACCCATCGAGGCCGCC............................................................................................................. 2250.400.40-----------------------------------------------0.40----
......................TCGAGGCGACGGGGTGAGACCCAGC........................................................................................................................................................................................................... 2530.330.33------------------------------------------------0.33---
...................................................................................................................................................................................................CGCCGGGCCGGGTGG........................................ 1580.120.12-0.12--------------------------------------------------
..................................................................................................................................................................................................GCCGGGCCGGGTGGA......................................... 1590.110.11-0.11--------------------------------------------------