ID: uc002tau.3_intron_1_0_chr2_101627489_r
GENE: (16)
chr2:101627439-101627962-


(2)
AGO2.ip
(1)
BRAIN
(6)
BREAST
(13)
CELL-LINE
(3)
CERVIX
(2)
HEART
(2)
HELA
(2)
LIVER
(1)
OTHER
(10)
SKIN
(1)
TESTES
(2)
XRN.ip

Sense strand
GAATCCTCTGTTGTCAACATCGAGACCCCTGGTTTTCGGGAAACCCAATGGCACGTACCTCTTTTCATTGTTGCTTTCCCCTGCATACCACTGCAGTGGCGGGAGGCACCGGGGTTGCCCTCATCCCTCTTCTTGTAGCAGCCTTGTCTTTTCCCTTCGTCCAATGAATTATCCCCAAACTCACTGCCTTTAGAGGACAGAAGTGCTCCTAGTGGGGGTGTTGCTGGGTGGCTGCCCCTTGCCCCCACCACCAAGTTCCTTCCTCCTGTTTGCTGTTTCACGGGTCCTCTTAGAGCAGAAGTCCCCCAGTTACCACCCACTGGCTCTCCAGGGGAATCTCTTGCTTTCCAGTTTTGTATGGAATTTGCTTAGTGGAATTCCTCACCCCCTTGCTCCTCTCTCCTACATAGTTTCCTTTTTGCTGTCACTGAATTTATTTAAATTAAACCACATATTGTTTTCCTTTGTTTCAAGGTGATGCAGTTGATTATCAGAAACAGCTGAAGCAGATGATTAAGGATTTA
..............................................................................................................................................((((........((((((((..((((....................))))..)))).))))........(((((((((.....((((....))))..)))))))))...)))).............................................................................................................................................................................................................................................................................
.............................................................................................................................................142......................................................................................................................................279...................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR040042(GSM532927)
G428N. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191487(GSM715597)
126genomic small RNA (size selected RNA from . (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
TAX577739(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR040043(GSM532928)
G428T. (cervix)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577745(Rovira)
total RNA. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
..................................................................................................................................................TCTTTTCCCTTCGTCGGCC.......................................................................................................................................................................................................................................................................................................................................................................198.000.007.001.00------------------------------------------
..................................................................................................................................................TCTTTTCCCTTCGTCTGTT.......................................................................................................................................................................................................................................................................................................................................................................196.000.004.002.00------------------------------------------
..................................................................................................................................................TCTTTTCCCTTCGTCGGCT.......................................................................................................................................................................................................................................................................................................................................................................196.000.004.002.00------------------------------------------
..................................................................................................................................................TCTTTTCCCTTCGTCTGCT.......................................................................................................................................................................................................................................................................................................................................................................195.000.005.00-------------------------------------------
..................................................................................................................................................TCTTTTCCCTTCGTCGGTC.......................................................................................................................................................................................................................................................................................................................................................................193.000.003.00-------------------------------------------
..................................................................................................................................................TCTTTTCCCTTCGTCGGTT.......................................................................................................................................................................................................................................................................................................................................................................193.000.003.00-------------------------------------------
..................................................................................................................................................TCTTTTCCCTTCGTCTGTC.......................................................................................................................................................................................................................................................................................................................................................................192.000.002.00-------------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATCAGAAACAGCTGAAGCAGAT.............2512.002.00----------------2.00---------------------------
..................................................................................................................................................TCTTTTCCCTTCGTCTGCC.......................................................................................................................................................................................................................................................................................................................................................................192.000.002.00-------------------------------------------
................................................................................................................................................................................................................................................................TCCTTCCTCCTGTTTACAG.........................................................................................................................................................................................................................................................192.000.00---------------2.00----------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGAAACAGCTGAAGCAGATG............2211.001.00---------1.00----------------------------------
..................................................................................................................................................TCTTTTCCCTTCGTCCGCT.......................................................................................................................................................................................................................................................................................................................................................................191.000.001.00-------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................CTCCTCTCTCCTACATAGTTT...............................................................................................................2111.001.00----------1.00---------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTATTTAAATTAAACCACATACTG...................................................................271.000.00---------------------------------------1.00----
..........................................................................................................................ATCCCTCTTCTTGTACCA................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-------------------1.00------------------------
.....................................................................................................................................................................................................................GGGGGTGTTGCTGGGTCGGG...................................................................................................................................................................................................................................................................................................201.000.00----------------------------------------1.00---
...............................................................................................................................................TTGTCTTTTCCCTTCTAAC..........................................................................................................................................................................................................................................................................................................................................................................191.000.001.00-------------------------------------------
.....................................................................................................................................................................................................................................................................CCTCCTGTTTGCTGTCTGC....................................................................................................................................................................................................................................................191.000.00------------------------------1.00-------------
......................AGACCCCTGGTTTTCGGGAAACCCAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001.00---------------------1.00----------------------
...................................................................................................................................................CTTTTCCCTTCGTCCG.........................................................................................................................................................................................................................................................................................................................................................................161.000.00--------------------------------------1.00-----
......................................................................................................................................................................................................................GGGGTGTTGCTGGGTA......................................................................................................................................................................................................................................................................................................161.000.00----------------------------------1.00---------
...............................GTTTTCGGGAAACCCAATG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00--------------------1.00-----------------------
..............................................................................................................................................................................................................................................................................................................................ACTGGCTCTCCAGGGGAATCCCTT......................................................................................................................................................................................241.000.00---1.00----------------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGATTATCAGAACTT.........................181.000.00----------------------------1.00---------------
...............................................................................................................................................................................................................................................................................................................................CTGGCTCTCCAGGGGAATCTCTTGC....................................................................................................................................................................................2511.001.00-----------1.00--------------------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................CTACATAGTTTCCTTTTTGCTGTCACT...............................................................................................2711.001.00-------------------------------------1.00------
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCTGAAGCAGATGATTAAGG.....2411.001.00--------------------------1.00-----------------
....................................CGGGAAACCCAATGGCACGTACCTCTTTTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................3111.001.00----1.00---------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCTTTTTGCTGTAGGC...............................................................................................191.000.00----------------------1.00---------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGCAGATGATTAAGGATTT.2411.001.00-----------------------------------1.00--------
..................................................................................................................................................TCTTTTCCCTTCGTCCGCC.......................................................................................................................................................................................................................................................................................................................................................................191.000.001.00-------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTCCTTTTTGCTGTCACT...............................................................................................2111.001.00-----------------------1.00--------------------
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGAAGCAGATGATTAA.......2011.001.00---------1.00----------------------------------
...........................................................................................................................................................................................................................GTTGCTGGGTGGCTGCAA...............................................................................................................................................................................................................................................................................................181.000.00------------------------------------------1.00-

Antisense strand
GAATCCTCTGTTGTCAACATCGAGACCCCTGGTTTTCGGGAAACCCAATGGCACGTACCTCTTTTCATTGTTGCTTTCCCCTGCATACCACTGCAGTGGCGGGAGGCACCGGGGTTGCCCTCATCCCTCTTCTTGTAGCAGCCTTGTCTTTTCCCTTCGTCCAATGAATTATCCCCAAACTCACTGCCTTTAGAGGACAGAAGTGCTCCTAGTGGGGGTGTTGCTGGGTGGCTGCCCCTTGCCCCCACCACCAAGTTCCTTCCTCCTGTTTGCTGTTTCACGGGTCCTCTTAGAGCAGAAGTCCCCCAGTTACCACCCACTGGCTCTCCAGGGGAATCTCTTGCTTTCCAGTTTTGTATGGAATTTGCTTAGTGGAATTCCTCACCCCCTTGCTCCTCTCTCCTACATAGTTTCCTTTTTGCTGTCACTGAATTTATTTAAATTAAACCACATATTGTTTTCCTTTGTTTCAAGGTGATGCAGTTGATTATCAGAAACAGCTGAAGCAGATGATTAAGGATTTA
..............................................................................................................................................((((........((((((((..((((....................))))..)))).))))........(((((((((.....((((....))))..)))))))))...)))).............................................................................................................................................................................................................................................................................
.............................................................................................................................................142......................................................................................................................................279...................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR343335SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR040042(GSM532927)
G428N. (cervix)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191487(GSM715597)
126genomic small RNA (size selected RNA from . (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037937(GSM510475)
293cand2. (cell line)
TAX577739(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
TAX577742(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR040043(GSM532928)
G428T. (cervix)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577745(Rovira)
total RNA. (breast)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
..........................................................................................................................................................GGGATAATTCATTGGACGAAG............................................................................................................................................................................................................................................................................................................................................................. 2113.003.00--3.00-----------------------------------------
.AATCCTCTGTTGTCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 173.000.00-----3.00--------------------------------------
.........................................................................................................................................................................GCAGTGAGTTTGGGGATA................................................................................................................................................................................................................................................................................................................................................. 1813.003.00--------3.00-----------------------------------
...................TCGAGACCCCTGGTTGTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 193.000.00----1.00-----1.00---------------------1.00-----------
..................................................................................................................................................................................................................................................................CTAAGAGGACCCGTGAAACAGCAAACAGGAGGAAG....................................................................................................................................................................................................................................... 3512.002.00-----------------2.00--------------------------
...........................................................................................................................................................................................................................................................................................GTAACTGGGGGACTTCTGCTCTAAGAGGAC................................................................................................................................................................................................................... 3012.002.00--2.00-----------------------------------------
...................................................................................................................................................................................................................................................................................................AGAGCAGAAGTCCCCCAGTTACCACCCACG........................................................................................................................................................................................................... 301.000.00------------1.00-------------------------------
.....................................................................................................................................................................................................CAGAAGTGCTCCTAGGCCC.................................................................................................................................................................................................................................................................................................................... 191.000.00-------------------------------1.00------------
........................................................................................................................................................................TTATCCCCAAACTCACTGCCTTCT............................................................................................................................................................................................................................................................................................................................................ 241.000.00---1.00----------------------------------------
...................TCGAGACCCCTGGTTTGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00------------------------------------1.00-------
.........................................................................................................................................................................................TAGGAGCACTTCTGTCCTCTAAAGGC......................................................................................................................................................................................................................................................................................................................... 2611.001.00-------1.00------------------------------------
...........................................................................................................................................................................................................TGCTCCTAGTGGGGGTGACC............................................................................................................................................................................................................................................................................................................. 201.000.00---1.00----------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................TGGAATTCCTCACCCCCTAGC................................................................................................................................... 211.000.00------1.00-------------------------------------
...................TCGAGACCCCTGGTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 161.000.00------------------------1.00-------------------
.......................................................................................................AGGCACCGGGGTTGCCCTCAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................. 241.000.00-1.00------------------------------------------
............................................................................................................................................ATTGGACGAAGGGAAAAGACAAGGC....................................................................................................................................................................................................................................................................................................................................................................... 2511.001.00--1.00-----------------------------------------
.....................................................................................................................................................................................................................GGGGGTGTTGCTGGGCCCT.................................................................................................................................................................................................................................................................................................... 191.000.00-------------1.00------------------------------
..........................................................................................................................................................................................................................................................................................TAACTGGGGGACTTCTGCTCTAAGAGGACC.................................................................................................................................................................................................................... 3011.001.00---------------------------1.00----------------
................................................TGGCACGTACCTCTTCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 171.000.00---1.00----------------------------------------
..............................................................................................................................................................................................................................................................................................................................................CAAAACTGGAAAGCAAGAGATT........................................................................................................................................................................ 2211.001.00-------------------------1.00------------------
...........................................................................................................................................................................................................................................................................................................................................GGGAATCTCTTGCTTTCCATG............................................................................................................................................................................ 211.000.001.00-------------------------------------------
..................ATCGAGACCCCTGGTTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 181.000.00----1.00---------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................TAGGAGAGAGGAGCAAGGGGGTGAGGAATTCC....................................................................................................................... 3211.001.00------1.00-------------------------------------
...................TCGAGACCCCTGGTTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 171.000.00-----------------------------1.00--------------
..........................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAAACTATGTAGGAGAGAGG.......................................................................................................... 2411.001.00-1.00------------------------------------------
..............................................................................................................................................................................................................................................................CAAACAGGAGGAAGGAAC............................................................................................................................................................................................................................................................ 1811.001.00--------------1.00-----------------------------
.................................................................CAGGGGAAAGCAACAATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................... 1811.001.00-----------------------------------------1.00--
........................................................................................................................................................................................................................................................................TAAGAGGACCCGTGAAACAGCAAACAGG........................................................................................................................................................................................................................................ 2811.001.00-------1.00------------------------------------
......................................................................................................................................CGAAGGGAAAAGACAAGGCTGCTAC............................................................................................................................................................................................................................................................................................................................................................................. 2511.001.00------------------1.00-------------------------
..................................................................................................................................AAAAGACAAGGCTGCTACAAGA.................................................................................................................................................................................................................................................................................................................................................................................... 2211.001.00-----------1.00--------------------------------
........................................................................GCTTTCCCCTGCATATCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................. 191.000.00------------1.00-------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................CTATGTAGGAGAGAGGAGCAAGGGGG.................................................................................................................. 2611.001.00--------------1.00-----------------------------
...............................................................................................GTGGCGGGAGGCACCGGGGTTGCCCTCGCA............................................................................................................................................................................................................................................................................................................................................................................................................... 301.000.00------1.00-------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTTGCTCCTCTCTCCTACATAGTCG............................................................................................................... 291.000.00---1.00----------------------------------------
.........................................................................................................................................TTGGACGAAGGGAAAAGACAAGGCTGC........................................................................................................................................................................................................................................................................................................................................................................ 2711.001.00-------1.00------------------------------------
.............................................................................................................................................................................................................................................................AGTTCCTTCCTCCTGCTG............................................................................................................................................................................................................................................................. 181.000.00---------------------------------1.00----------
..........................................................................................................................................................................................................................................................................................GGGGACTTCTGCTCTAAGAGGACC.......................................................................................................................................................................................................................... 2411.001.00-------------1.00------------------------------
........................................................................................................................................................GTTTGGGGATAATTCATTGGACGAAGGG........................................................................................................................................................................................................................................................................................................................................................ 2811.001.00----1.00---------------------------------------
.........................................................................................................................................................................................................................GCAGCCACCCAGCAACAC................................................................................................................................................................................................................................................................................................. 1840.500.50-------------------------------------------0.50
......................................................................................................................................................................................................................................................................TGAAACAGCAAACAGGAG.................................................................................................................................................................................................................................................... 1820.500.50--0.50-----------------------------------------