ID: uc002taf.2_intron_21_0_chr2_100628034_r.5p
GENE: (2)
chr2:100720664-100720913-


(2)
AGO2.ip
(14)
B-CELL
(2)
BRAIN
(19)
BREAST
(27)
CELL-LINE
(11)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(3)
LIVER
(4)
OTHER
(1)
RRP40.ip
(46)
SKIN
(1)
TESTES
(2)
UTERUS

Sense strand
GACAGCTTCGACTTAGCCCTGCTCCAGGAATGGGACCTCGAGTCACTGTGGTAAGTCCCCGTGCCGGCCGCTTCGGGCGGGCGGGAGCGGCGAGGGGCGGCCGCGGCGGCCCGCGCGTCCTCACCTGGGCCGGGGGCTCCGGGCGGCCGGCCGCCGTGGGGGTGGGGTGGGTCGGGGGCGCCTGCCTCGCCAGCCCTTTTCTGCCTCCCCGGGTGGGATGCGTGGCCGCCTGCCCGTCTGTTTCCCCCTC
...................................................................(((((((..((..((....)).))..)))))))(((((((((((.((.(((((......(((((...))))).))))))).)))))))))))...........................................................................................
...................................................................68..............................................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormTAX577589(Rovira)
total RNA. (breast)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR189784SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040011(GSM532896)
G529T. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
GSM532881(GSM532881)
G696N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR040023(GSM532908)
G575T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR040007(GSM532892)
G601T. (cervix)
SRR038854(GSM458537)
MM653. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM532873(GSM532873)
G699N. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040024(GSM532909)
G613N. (cervix)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR038859(GSM458542)
MM386. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038861(GSM458544)
MM466. (cell line)
SRR343335SRR038860(GSM458543)
MM426. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
........................................................................TCGGGCGGGCGGGAGTTT................................................................................................................................................................185.000.00-4.00---1.00---------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................GGCGGCCGGCCGCCGCCGG..........................................................................................1964.170.330.83------0.170.170.170.17-----0.330.17--0.33----0.33--0.170.17-------------------------------0.33------------------0.17--------------------0.170.17----0.17---0.17-----------------------
.............................................................................................................................................GGCGGCCGGCCGCCGTCGGG.........................................................................................203.000.001.00-------1.001.00-----------------------------------------------------------------------------------------------------------------------------
........................................................................TCGGGCGGGCGGGAGATG................................................................................................................................................................183.000.00---------------------------1.00------------------1.00-----------1.00----------------------------------------------------------------------------
.........................................................................CGGGCGGGCGGGAGCGG................................................................................................................................................................1762.672.67---0.17-------------0.17-------------------------------------------0.17-0.17-0.17--0.17-------------------0.33-------0.17-0.17-------0.17--0.17--0.170.17-----------0.170.17--------
.........................................................................CGGGCGGGCGGGAGCGGGCAA............................................................................................................................................................2162.332.67-----0.33-------------0.17--0.33----------------------------------------0.170.33-----0.170.17---------------0.17-----0.17--------------------0.17-----0.17--------------
.........................................................................CGGGCGGGCGGGAGCGGGCA.............................................................................................................................................................2062.332.67-----0.17------------------------0.17-------------------------------------0.170.17-0.33-0.17-----0.17-------0.17-----------0.17----0.170.17---------0.17-------0.17-----------
............................................................................GCGGGCGGGAGCGGCGGGAA..........................................................................................................................................................202.000.00-----1.00-------------------------------------------1.00-------------------------------------------------------------------------------------
.........................................................................CGGGCGGGCGGGAGCGGGCGA............................................................................................................................................................2161.332.67-------------------0.17-------------------------------------------0.170.17----0.330.17-0.17-------------------------------------------0.17------------------
.........................................................................CGGGCGGGCGGGAGCGGCCG.............................................................................................................................................................201.000.00-------------------1.00-------------------------------------------------------------------------------------------------------------------
..........................................................................GGGCGGGCGGGAGCGGGCAA............................................................................................................................................................201.000.00----------------------1.00----------------------------------------------------------------------------------------------------------------
........................................................................TCGGGCGGGCGGGAGAAGA...............................................................................................................................................................191.000.00----1.00----------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................GGGTGGGGTGGGTCGTAG.........................................................................181.000.00---------------------------------------------------------1.00-----------------------------------------------------------------------------
...................................................................................................GCCGCGGCGGCCCGCGGGGG...................................................................................................................................201.000.00--1.00------------------------------------------------------------------------------------------------------------------------------------
...............................................................................................GGCGGCCGCGGCGGCAGGC........................................................................................................................................191.000.00------1.00--------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................GTGGGTCGGGGGCGCCGGGG................................................................201.000.00----1.00----------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................CGGGTGGGATGCGTGCA........................171.000.00-----------------------------------------------------------1.00---------------------------------------------------------------------------
.............................................................................CGGGCGGGAGCGGCGGGCA..........................................................................................................................................................191.000.00--------------------------------------------------------1.00------------------------------------------------------------------------------
...........................................................................GGCGGGCGGGAGCGGCGGGG...........................................................................................................................................................201.000.00------1.00--------------------------------------------------------------------------------------------------------------------------------
........................................................................TCGGGCGGGCGGGAGTTA................................................................................................................................................................181.000.00-------------------------------------------1.00-------------------------------------------------------------------------------------------
.......................................................TCCCCGTGCCGGCCGCCG.................................................................................................................................................................................181.000.00--------------------------------------------1.00------------------------------------------------------------------------------------------
............................................................................GCGGGCGGGAGCGGCGGGG...........................................................................................................................................................191.000.00-----------------------------------------1.00---------------------------------------------------------------------------------------------
...............................................................................................................................................................GGGTGGGGTGGGTCGGGC.........................................................................181.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................CGGGTGGGATGCGTGC.........................161.000.00-------1.00-------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................GGGTGGGTCGGGGGCGCATGG.................................................................211.000.00------------1.00--------------------------------------------------------------------------------------------------------------------------
............................................................................GCGGGCGGGAGCGGCGGGGG..........................................................................................................................................................201.000.00------------1.00--------------------------------------------------------------------------------------------------------------------------
..................................................................................GGGAGCGGCGAGGGGTAA......................................................................................................................................................181.000.00-----------------------------1.00---------------------------------------------------------------------------------------------------------
........................................................................TCGGGCGGGCGGGAGAGAA...............................................................................................................................................................191.000.00----1.00----------------------------------------------------------------------------------------------------------------------------------
..........................................................................GGGCGGGCGGGAGCGGGCA.............................................................................................................................................................191.000.00---------------------1.00-----------------------------------------------------------------------------------------------------------------
...............................................................................GGCGGGAGCGGCGAGGCG.........................................................................................................................................................181.000.00---------------------------------------1.00-----------------------------------------------------------------------------------------------
........................................................................TCGGGCGGGCGGGAGTG.................................................................................................................................................................171.000.00--------------------------------------1.00------------------------------------------------------------------------------------------------
............................................................................GCGGGCGGGAGCGGCGGCCA..........................................................................................................................................................201.000.00---------------------------------------------1.00-----------------------------------------------------------------------------------------
........................................................................TCGGGCGGGCGGGAGTTG................................................................................................................................................................181.000.00-----------------------------------------------1.00---------------------------------------------------------------------------------------
........................................................................TCGGGCGGGCGGGAGCGGAA..............................................................................................................................................................201.000.00-----------------------1.00---------------------------------------------------------------------------------------------------------------
.............................................................................CGGGCGGGAGCGGCGGCTT..........................................................................................................................................................191.000.00----------------------------------------------------1.00----------------------------------------------------------------------------------
..................................................................................................GGCCGCGGCGGCCCGCGTG.....................................................................................................................................191.000.00-----------------1.00---------------------------------------------------------------------------------------------------------------------
............................................................................GCGGGCGGGAGCGGCGGGGA..........................................................................................................................................................201.000.00-----------------------------------1.00---------------------------------------------------------------------------------------------------
.......................................................................................CGGCGAGGGGCGGCCGGC.................................................................................................................................................181.000.00------------------------------------------------------1.00--------------------------------------------------------------------------------
.......................................GAGTCACTGTGGTAAGG..................................................................................................................................................................................................171.000.00---------------------------------------------------1.00-----------------------------------------------------------------------------------
............................................................................GCGGGCGGGAGCGGCA..............................................................................................................................................................161.000.00------------------------------------------------1.00--------------------------------------------------------------------------------------
............................................................................................................................................GGGCGGCCGGCCGCCGC.............................................................................................171.000.001.00--------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................GCCGCGGCGGCCCGCCG......................................................................................................................................171.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------------
.................................................................................CGGGAGCGGCGAGGG..........................................................................................................................................................1570.860.86-------------------------------0.14-----------------------------------0.57----------------------------------------------------------------0.14--
.................................................................................CGGGAGCGGCGAGGGCGGC......................................................................................................................................................1970.710.86----------------0.29---------------------------------------------------------------------------------------------------------------0.14--0.14--0.14
......................................................................................................................................................................GTGGGTCGGGGGCGCGGTG.................................................................1930.670.33------------------------------------------------------------------------------------0.33-0.33------------------------------------------------
......................................................................................................................................................................GTGGGTCGGGGGCGCTGG..................................................................1830.670.33---------------------------0.33--------------------------------------------0.33--------------------------------------------------------------
.........................................................................CGGGCGGGCGGGAGCGGGT..............................................................................................................................................................1960.502.67---------------------------------------------------------------0.17--------------------------------------------0.17--------0.17-----------------
.........................................................................CGGGCGGGCGGGAGCGGGAA.............................................................................................................................................................2060.502.67--------------------------------------------------------------------0.17----------------------0.17-----------------------------------0.17-------
.............................................................................................................................................GGCGGCCGGCCGCCGCCCG..........................................................................................1960.500.33--------0.17----------------------------------------------------0.17------------------------------------------------------------0.17------------
.........................................................................CGGGCGGGCGGGAGCGGAA..............................................................................................................................................................1960.502.67-------------------------------------------------------------------------------------------------0.17---------------------0.17-0.17-------------
..........ACTTAGCCCTGCTCCAGGAATGGGACC.....................................................................................................................................................................................................................2730.330.33---------------------0.33-----------------------------------------------------------------------------------------------------------------
.............................................................................................................................................GGCGGCCGGCCGCCG..............................................................................................1560.330.33--------------------------------------------------------------------------------0.17-----------------------------0.17------------------------
.................................................................................................................................................................................GCGCCTGCCTCGCCAGCCC......................................................1930.330.33------------------------------------------------------------------------------0.33--------------------------------------------------------
.........................AGGAATGGGACCTCGAGTCACT...........................................................................................................................................................................................................2230.330.33-----------------------------------------------------------------------------------0.33---------------------------------------------------
...................................................................CCGCTTCGGGCGGGCGGGAGCGGC...............................................................................................................................................................2430.330.33-------------0.33-------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................GTGGGTCGGGGGCGC.....................................................................1530.330.33--------------------------------------------------------------0.33------------------------------------------------------------------------
..............................................................GCCGGCCGCTTCGGGCGGGCG.......................................................................................................................................................................2130.330.33------------------------------------------------------------------------------------------0.33--------------------------------------------
.........................................................................CGGGCGGGCGGGAGCGGGA..............................................................................................................................................................1960.332.67-------------------------------------------------------------------------------0.17-----------------------0.17-------------------------------
.....................................................................................AGCGGCGAGGGGCGGCCG...................................................................................................................................................1830.330.33-------------------------------------------------------------------------0.33-------------------------------------------------------------
...........................................CACTGTGGTAAGTCCCCGTGC..........................................................................................................................................................................................2130.330.33------------------------------------------------------------------0.33--------------------------------------------------------------------
..................................................................................................................................................................................CGCCTGCCTCGCCAG.........................................................1530.330.33-------------------------------------------------------------------------------------0.33-------------------------------------------------
.............................................................................................................................................GGCGGCCGGCCGCCGGGGG..........................................................................................1960.170.33-----------------0.17---------------------------------------------------------------------------------------------------------------------
.........................................................................CGGGCGGGCGGGAGCGGGTAG............................................................................................................................................................2160.172.67-------------------------------------------------------------------------------------------0.17-------------------------------------------
.........................................................................CGGGCGGGCGGGAGCGGGTA.............................................................................................................................................................2060.172.67----------------------------------------------------------------0.17----------------------------------------------------------------------
.............................................................................................................................................GGCGGCCGGCCGCCGCCTG..........................................................................................1960.170.33----------------------------------------------------------------------------------------------------0.17----------------------------------
.........................................................................CGGGCGGGCGGGAGCGGGTT.............................................................................................................................................................2060.172.67-----------------------------------------------------------------0.17---------------------------------------------------------------------
.........................................................................CGGGCGGGCGGGAGCGGGCAC............................................................................................................................................................2160.172.67----------------------------------------------------------------------------------------------------------------------------0.17----------
.............................................................................................................................................GGCGGCCGGCCGCCGCCC...........................................................................................1860.170.330.17--------------------------------------------------------------------------------------------------------------------------------------
.........................................................................CGGGCGGGCGGGAGCGGGTAA............................................................................................................................................................2160.172.67-----0.17---------------------------------------------------------------------------------------------------------------------------------
.........................................................................CGGGCGGGCGGGAGCGGGCAG............................................................................................................................................................2160.172.67----------------------------------------------------------------------0.17----------------------------------------------------------------
.........................................................................CGGGCGGGCGGGAGCGGGAAA............................................................................................................................................................2160.172.67---------------------------------------------------------------------------------------------0.17-----------------------------------------
......................................................................................................GCGGCGGCCCGCGCG.....................................................................................................................................1580.120.12---0.12-----------------------------------------------------------------------------------------------------------------------------------
......................................................................................................GCGGCGGCCCGCGCGCG...................................................................................................................................1780.120.120.12--------------------------------------------------------------------------------------------------------------------------------------

Antisense strand
GACAGCTTCGACTTAGCCCTGCTCCAGGAATGGGACCTCGAGTCACTGTGGTAAGTCCCCGTGCCGGCCGCTTCGGGCGGGCGGGAGCGGCGAGGGGCGGCCGCGGCGGCCCGCGCGTCCTCACCTGGGCCGGGGGCTCCGGGCGGCCGGCCGCCGTGGGGGTGGGGTGGGTCGGGGGCGCCTGCCTCGCCAGCCCTTTTCTGCCTCCCCGGGTGGGATGCGTGGCCGCCTGCCCGTCTGTTTCCCCCTC
...................................................................(((((((..((..((....)).))..)))))))(((((((((((.((.(((((......(((((...))))).))))))).)))))))))))...........................................................................................
...................................................................68..............................................................................................164....................................................................................
SizePerfect hitTotal NormPerfect NormTAX577589(Rovira)
total RNA. (breast)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
TAX577742(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
TAX577579(Rovira)
total RNA. (breast)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
TAX577746(Rovira)
total RNA. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532876(GSM532876)
G547T. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR189784SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040011(GSM532896)
G529T. (cervix)
SRR040016(GSM532901)
G645N. (cervix)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
GSM532881(GSM532881)
G696N. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR040023(GSM532908)
G575T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR040007(GSM532892)
G601T. (cervix)
SRR038854(GSM458537)
MM653. (cell line)
SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
GSM532873(GSM532873)
G699N. (cervix)
SRR553576(SRX182782)
source: Testis. (testes)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040032(GSM532917)
G603N. (cervix)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040024(GSM532909)
G613N. (cervix)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR038859(GSM458542)
MM386. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038861(GSM458544)
MM466. (cell line)
SRR343335SRR038860(GSM458543)
MM426. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR038856(GSM458539)
D11. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR033731(GSM497076)
h929 Cell line (h929). (B cell)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR444070(SRX128918)
Sample 27_4cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR191550(GSM715660)
27genomic small RNA (size selected RNA from t. (breast)
.............................................................................................GGGGCGGCCGCGGCGCGGG.......................................................................................................................................... 196.000.00----------------1.00-1.00-1.00---1.00---1.00--------------------------1.00-------------------------------------------------------------------------------
................................................................................................................................................................................................CCACCCGGGGAGGCAGAAAAGGGC.................................. 2434.674.67-------0.33-----0.671.000.67--0.33----0.330.33-----------------------------------0.33----------------------------0.33--0.33------------------------------------------
.....................................................................................................CGCGGCGGCCCGCGCCG.................................................................................................................................... 174.000.00--3.001.00-----------------------------------------------------------------------------------------------------------------------------------
.............................................................................................GGGGCGGCCGCGGCGCGG........................................................................................................................................... 184.000.00----------1.00--------------1.00-----1.00---------------------1.00---------------------------------------------------------------------------------
................................................................................................................................................................................................CCCGGGGAGGCAGAAAAGGGC..................................... 2132.002.00--------------0.330.67--------------------------------------------0.33---------------0.330.33---------------------------------------------------------
.........................................................................................................................................................CCGTGGGGGTGGGGTGGGATT............................................................................ 211.000.00-------1.00-------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................CTGCCTCCCCGGGTGGTG................................ 181.000.00------------------------------1.00--------------------------------------------------------------------------------------------------------
........................................................................................................GGCGGCCCGCGCGTCTTGA............................................................................................................................... 191.000.00--------------------------------1.00------------------------------------------------------------------------------------------------------
.............................................................................................................................................GGCGGCCGGCCGCCGGCCG.......................................................................................... 1961.000.00--------1.00------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................GTGGGGTGGGTCGGGGC........................................................................ 171.000.00----------------------------------------1.00----------------------------------------------------------------------------------------------
.AGGGCTAAGTCGAAGCTGT...................................................................................................................................................................................................................................... 1931.001.000.33-------------------------------------------------------------0.33-------------------0.33----------------------------------------------------
............................................................................................AGGGGCGGCCGCGGCGGGGG.......................................................................................................................................... 201.000.001.00--------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................GGGGCGGCCGCGGCGCGGC.......................................................................................................................................... 191.000.00-------------------------------------1.00-------------------------------------------------------------------------------------------------
...............................................................................................................CGCGCGTCCTCACCTAGGC........................................................................................................................ 191.000.00-----------1.00---------------------------------------------------------------------------------------------------------------------------
.............................................................................................................................................GGCGGCCGGCCGCCGGCC........................................................................................... 1861.000.00--------------------------1.00------------------------------------------------------------------------------------------------------------
....................................................................................................................................GGGGCTCCGGGCGGCGGGG................................................................................................... 191.000.00----------1.00----------------------------------------------------------------------------------------------------------------------------
.......................................................................................................CGGCGGCCCGCGCGTCCTCGCAA............................................................................................................................ 231.000.00---------------------------------1.00-----------------------------------------------------------------------------------------------------
..........................................................................................................CGGCCCGCGCGTCCTGGGC............................................................................................................................. 191.000.00----------------------------------1.00----------------------------------------------------------------------------------------------------
........................................................CCCCGTGCCGGCCGCTAGG............................................................................................................................................................................... 191.000.001.00--------------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................TGCCTCGCCAGCCCTTT................................................... 171.000.00-----------1.00---------------------------------------------------------------------------------------------------------------------------
...........................................................................................GAGGGGCGGCCGCGGCTTTT........................................................................................................................................... 201.000.00------------------------------------1.00--------------------------------------------------------------------------------------------------
.............................................................................................................................................GGCGGCCGGCCGCCGGC............................................................................................ 1761.000.00--------------------------------------------------1.00------------------------------------------------------------------------------------
.............................................................................................................................................GGCGGCCGGCCGCCGGTC........................................................................................... 1861.000.00---------1.00-----------------------------------------------------------------------------------------------------------------------------
..........................................................CCGTGCCGGCCGCTTATTG............................................................................................................................................................................. 191.000.00------------------------------------------1.00--------------------------------------------------------------------------------------------
................................................................................................................................................................................................CACCCGGGGAGGCAGAAAAGGGC................................... 2330.670.67-------------0.67-------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................ACCCGGGGAGGCAGAAAAGGGC.................................... 2230.670.67--------------0.330.33-----------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................TCCCACCCGGGGAGGCAGAAAAGGGC................................ 2630.670.67--------------------------------------------------------------------------0.330.33-----------------------------------------------------------
................................................................................................................................................................................................CCCACCCGGGGAGGCAGAAAAGGGC................................. 2530.670.67--------------------------0.33------------------------------------------------------0.33-----------------------------------------------------
........................................................................................GCGGCCGCCCCTCGCC.................................................................................................................................................. 1670.570.57------------------0.14--------------------------------------------------------------------------------------------------------------0.140.14--0.14-
.................................................................................................................................................................................................CACCCGGGGAGGCAGAAAAGGG................................... 2230.330.33--------------0.33------------------------------------------------------------------------------------------------------------------------
....CATTCCTGGAGCAGGGCTAAGTCGAAGC.......................................................................................................................................................................................................................... 2830.330.33------0.33--------------------------------------------------------------------------------------------------------------------------------
........................................................................................CCGCGGCCGCCCCTCGCC................................................................................................................................................ 1830.330.33-------------0.33-------------------------------------------------------------------------------------------------------------------------
............................................................................................CGGGCCGCCGCGGCCGCCCCT......................................................................................................................................... 2140.250.25-----------------------------------------------------------------0.25---------------------------------------------------------------------
.....................................................................................................CGCGGCGGCCCGCGCGAGG.................................................................................................................................. 190.250.00------0.25--------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................AAACAGACGGGCAGG....... 1540.250.25-----------------------------------------------------------------------------------------------0.25---------------------------------------
.....................................................................................................CGCGCGGGCCGCCGCG..................................................................................................................................... 1640.250.25----------------------------------------------------------------------------------------------0.25----------------------------------------
..........................................................................................................................................CGGCCGGCCGCCCGG................................................................................................. 1540.250.25------------------------------------------------------------------0.25--------------------------------------------------------------------
....................................................................................CGCCCCTCGCCGCTC....................................................................................................................................................... 1560.170.17----------------------------------------------------------------------------------------------------------------------0.17----------------
.............................................................................................GCCGCCGCGGCCGCCCC............................................................................................................................................ 1790.110.11---0.11-----------------------------------------------------------------------------------------------------------------------------------