ID: uc002sxh.3_intron_13_0_chr2_97533661_r.3p
GENE: (1)
chr2:97533611-97533860-


(2)
AGO2.ip 		(1)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(16)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(3)
HEART 		(1)
HELA 		(1)
LIVER 		(2)
OTHER 		(38)
SKIN 		(1)
XRN.ip

Sense strand
CCCCGCTTCCCAGGGAGACCTGTGGTCTTTTAGGCAGAGGCCAAGTGTGGGGACTTAGGTCCACCTCCAAAGAGAAGGGGAAGGAGGGCACCGGGGCTCCTGGAAGGCCTGATGAGGAGTCCTGTGGCCTCTCCTGCTGCGGGCCCCTCTGGTTTGCTTTCTCTGGCTGTGATTTCTGACCATGTCTTTTCCCTCAGCAGGACAGCTGGCCTGAAGCTCAGAGCCGGGGCGTGCGCCATGGCCCCACACT
.................................................................(((........)))...(((((.((.((((((((((((....)).....)))))))))))).)))))......................................................................................................................
.................................................................66.................................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040036(GSM532921)
G243N. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
...........................................................................................................................................................................ATTTCTGACCATGTCTTTTCCCTCAGCAG..................................................29146.0046.004.001.001.002.00-1.004.001.001.002.001.001.001.002.002.00-2.00---1.002.001.00-2.002.001.001.00--1.00-1.00--1.00-1.001.00---1.00---1.001.00----1.00-------1.00--------
..........................................................................................................................................................................GATTTCTGACCATGTCTTTTCCCTCAGCAG..................................................30129.0029.001.002.002.00-2.003.00--1.001.002.001.001.00--2.00--1.002.00---1.00--1.00-1.00-------1.00-----------1.00--1.00----1.00-------1.00----
..............................................................................................................................................................................TCTGACCATGTCTTTTCCCTCAGCAG..................................................2617.007.00-1.00--1.00--2.001.00-----1.00------------------1.00-----------------------------------
...........................................................................................................................................................................ATTTCTGACCATGTCTTTTCCCTCAGCAGA.................................................3013.0046.00-----------------------------1.00---------------------------1.001.00----------
...........................................................................................................................................................................ATTTCTGACCATGTCTTTTCCCTCAGCAGAA................................................3113.0046.00--1.00-------------1.00---------------------------------1.00------------------
.................................GCAGAGGCCAAGTGTCGG.......................................................................................................................................................................................................182.000.00-------------------------------1.00--1.00----------------------------------
...........................................................................................................................................................................ATTTCTGACCATGTCTTTTCCCTCAGC....................................................2712.002.00---1.00----------------------------------------1.00------------------------
..............................................................................................................GATGAGGAGTCCTGTGGCC.........................................................................................................................1912.002.00------------1.00---------------------------1.00----------------------------
......................................................................AGAGAAGGGGAAGGAGGG..................................................................................................................................................................1891.221.22------------------------------------------------------------------0.440.440.33
.........................................................................................................................................................................TGATTTCTGACCATGTCTTTTCCCTCAG.....................................................2811.001.00-----------1.00---------------------------------------------------------
............................................................................GGGGAAGGAGGGCACCTAGA..........................................................................................................................................................201.000.00-------------------------------------------------1.00-------------------
...........................................................................................................................................................................ATTTCTGACCATGTCTTTTCCCTCAGCA...................................................2811.001.00--------------------------------------------------------------1.00------
..........................................................................................................................................................................GATTTCTGACCATGTCTTTTCCCTCAGCA...................................................2911.001.00-------------------------------------------------------1.00-------------
..............................................................................................................GATGAGGAGTCCTGTGG...........................................................................................................................1711.001.00-1.00-------------------------------------------------------------------
.........................................................................................................................................TGCGGGCCCCTCTGGTTTGCTTTCTCTGGCTGTGATTTCTGACCATGTCTTTTCCCTCAGC....................................................6111.001.00------------------------------------------------------1.00--------------
..............................................................................................................................................................................TCTGACCATGTCTTTTCCCTCAGCAGAAA...............................................2911.007.00---------------------------------------------------------------1.00-----
.................................................................................AGGAGGGCACCGGGGCCAGC.....................................................................................................................................................201.000.00-------------------------------------------------------------1.00-------
..............................................................................................................GATGAGGAGTCCTGTGGCCT........................................................................................................................2011.001.00----1.00----------------------------------------------------------------
............................................................................................................................................................................TTTCTGACCATGTCTTTTCCCTCAGCAG..................................................2811.001.00---1.00-----------------------------------------------------------------
..........................................................................................................................................................................GATTTCTGACCATGTCTTTT............................................................2011.001.00---------------1.00-----------------------------------------------------
.........................................................................................ACCGGGGCTCCTGGAAGG...............................................................................................................................................1811.001.00---------------------------------------------1.00-----------------------
.........................................................................................................................................................................TGATTTCTGACCATGTCTTTTCCCTCAGCAG..................................................3111.001.00-------------1.00-------------------------------------------------------
............................................GTGTGGGGACTTAGGTT.............................................................................................................................................................................................171.000.00-------1.00-------------------------------------------------------------
..........................................................................................................................................................TGCTTTCTCTGGCTGTGATTTCTGACC.....................................................................2711.001.00-----------------------1.00---------------------------------------------
.................................GCAGAGGCCAAGTGTCGGA......................................................................................................................................................................................................191.000.00-----------------------------------------------------------------1.00---
........................................................................................................AGGCCTGATGAGGAGTCCTGTGG...........................................................................................................................2311.001.00----------------------1.00----------------------------------------------
..............................................................................................................................................................................TCTGACCATGTCTTTTCCCTCA......................................................2211.001.00---------------------------1.00-----------------------------------------
......................................................................................................................................................................................................AGGACAGCTGGCCTGAAGCTCATA............................241.000.00-----------------------------------------------------------1.00---------
..................................................................................................................................................................................................................CTGAAGCTCAGAGCCGGG......................1811.001.00-----------------1.00---------------------------------------------------
................................................................................................CTCCTGGAAGGCCTGATGAGGAGTC.................................................................................................................................2511.001.00------------------1.00--------------------------------------------------
.........................................................................................................................................................................................................ACAGCTGGCCTGAAGCTCAGA............................2111.001.001.00--------------------------------------------------------------------
......................................................................................................................................................................................................AGGACAGCTGGCCTGAAGCTCAGAGCCGG.......................2911.001.00-----------------1.00---------------------------------------------------
......................................GGCCAAGTGTGGGGAGT...................................................................................................................................................................................................171.000.00-----------------------------------------------------1.00---------------
.................................................................................................................................................................................................TCAGCAGGACAGCTGGCCTGAAGCTCAG.............................2811.001.00--------------------1.00------------------------------------------------
..........................................................................................................................................................................GATTTCTGACCATGTCTTTTCCCTCAGCAGA.................................................3111.0029.00---------------------------------------1.00-----------------------------
.................................................................................................................GAGGAGTCCTGTGGCCTCTCCTGC.................................................................................................................2411.001.00-1.00-------------------------------------------------------------------

Antisense strand
CCCCGCTTCCCAGGGAGACCTGTGGTCTTTTAGGCAGAGGCCAAGTGTGGGGACTTAGGTCCACCTCCAAAGAGAAGGGGAAGGAGGGCACCGGGGCTCCTGGAAGGCCTGATGAGGAGTCCTGTGGCCTCTCCTGCTGCGGGCCCCTCTGGTTTGCTTTCTCTGGCTGTGATTTCTGACCATGTCTTTTCCCTCAGCAGGACAGCTGGCCTGAAGCTCAGAGCCGGGGCGTGCGCCATGGCCCCACACT
.................................................................(((........)))...(((((.((.((((((((((((....)).....)))))))))))).)))))......................................................................................................................
.................................................................66.................................................................133...................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040036(GSM532921)
G243N. (cervix)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR040008(GSM532893)
G727N. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029131(GSM416760)
MCF7. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
.............................................TGTGGGGACTTAGGTATC........................................................................................................................................................................................... 181.000.00-------------------------------------------1.00-------------------------
...........................................................................................................................GCCCGCAGCAGGAGAGGCCAC.......................................................................................................... 2111.001.00-----------------------------------------1.00---------------------------