ID: uc002suh.1_intron_1_0_chr2_95941259_f
GENE: (2)
chr2:95941209-95941727+


(1)
AGO2.ip
(1)
BRAIN
(9)
BREAST
(8)
CELL-LINE
(5)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(1)
OTHER
(20)
SKIN
(1)
TESTES

Sense strand
AGTTGGTAAAGGCCCTACTGAATGAGCTGGCCTCCGTGAAGGTGAATGAGGTGAGCAAGCTGGGGAAAGGTGCTGGGGGAGGGAGTTCTGGGGTGAGCAGCAGGGTGGGAGCAGAAAAGCCTTGGCTCCCCTTAGCCCACCTCGCTGGGTGTCCACTAGGCAGGGGCTCAGGCATCCTCTCCCCTCCTCTGTGGGCGCTGCAGTCCGTAGACCTGGGTGCAAACCACAGCTCTGCCATTTACTGGCAGTGAGGTTTGCAGGGAGCTGGAACTTCCTGAACTTCAGCTTCCTCCTGTGTAAGATGGTGATGAGCAGTAAGAATGCGGTCACCTCTGGGACGGGTTCCATGAGATGCAGGCCATGCCCCTGACGGCACTCCCGCCCCTTCTGGTTTCCCTCTGGACTCAGGCAGAAGCCAGGGCTGGGCAGTGGGGGTCGGGTCACCCCTCATGCCCTGCTGCCTGCCCAGGTGGTGCGGTACGAGGCGGGCTACGTGGTATGCGCTGTGATCGCGGGCCT
......................................................................................................................................(((((......)))))((((((.(((.(((((...(((...)))..))))))))..))))))...................................................................................................................................................................................................................................................................................................................................
..................................................................................................................................131...............................................................197................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189782SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR040023(GSM532908)
G575T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR040022(GSM532907)
G575N. (cervix)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR343337SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
TAX577739(Rovira)
total RNA. (breast)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................................................................................ATCCTCTCCCCTCCTCCCAG......................................................................................................................................................................................................................................................................................................................................2030.000.0022.00-4.00----2.00--------1.00-----------------------------1.00--------
.......................................................................................................................................CCCACCTCGCTGGGTGG...............................................................................................................................................................................................................................................................................................................................................................................17117.0015.00-13.00-2.001.00--------1.00-----------------------------------------
.......................................................................................................................................CCCACCTCGCTGGGTG................................................................................................................................................................................................................................................................................................................................................................................16115.0015.00-8.00-4.002.00--------1.00-----------------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................GCCATGCCCCTGACGGCACT..............................................................................................................................................2012.002.00--------------2.00----------------------------------------
..........................................................................................................................................................................................................................................................................................................................GTAAGAATGCGGTCACCT...........................................................................................................................................................................................1812.002.00-----------2.00-------------------------------------------
.............................................................................................................................................................................ATCCTCTCCCCTCCTCCCA.......................................................................................................................................................................................................................................................................................................................................191.000.00------------1.00------------------------------------------
......................................................................................................................................................................................................................................................................................................................................TCACCTCTGGGACGGGTT...............................................................................................................................................................................1811.001.00---------1.00---------------------------------------------
............................................................TGGGGAAAGGTGCTGGGTCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................211.000.00--------1.00----------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGTGCGGTACGAG...................................1711.001.00----------------------------------1.00--------------------
.GTTGGTAAAGGCCCTACTGAATGAGCTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.001.00-------------------------------------------1.00-----------
..................................................................................................................................................................................................................................................................................................................................GCGGTCACCTCTGGGCGC...................................................................................................................................................................................181.000.00------------------------------1.00------------------------
...................................................................................................................................................................................................................................................................................................................................CGGTCACCTCTGGGACGGG.................................................................................................................................................................................1911.001.00---------------1.00---------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGGCTGGGCAGTGGGGGTCGG................................................................................2411.001.00------1.00------------------------------------------------
......................................................................................................................................................................CTCAGGCATCCTCTCCCCTCCT...........................................................................................................................................................................................................................................................................................................................................2211.001.00------------------------1.00------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................TTCCCTCTGGACTCAGGCA............................................................................................................1911.001.00-------------------1.00-----------------------------------
...............................................................................................AGCAGCAGGGTGGGAGAGAG....................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00--------1.00----------------------------------------------
..........................CTGGCCTCCGTGAAGGTGAATGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001.00---------------------------------------------1.00---------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATGCGCTGTGATCGCGGG...2211.001.00--------------------------------------1.00----------------
...................................................................................................................................................................................................................................................................GGGAGCTGGAACTTCCTGAACTCTG...........................................................................................................................................................................................................................................251.000.00---------------------1.00---------------------------------
.............................................................................................................................................................................ATCCTCTCCCCTCCTCCCAT......................................................................................................................................................................................................................................................................................................................................201.000.001.00------------------------------------------------------
................................................................................................................................................................................................................................................................................................................................ATGCGGTCACCTCTGGGC.....................................................................................................................................................................................181.000.00--------------------------1.00----------------------------
.............................................................................................................................................................................................TGTGGGCGCTGCAGTCCTGT......................................................................................................................................................................................................................................................................................................................201.000.00------------------1.00------------------------------------
...............................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGGCTGGGCAGTGGGGGTCG.................................................................................2311.001.00------1.00------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACGTGGTATGCGCTGTGATCGCGGG...2811.001.00----------------------------1.00--------------------------
...........................................................................GGGGAGGGAGTTCTGAAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00-----------------------1.00-------------------------------
..........................................................................................................................................................................................................................................................................GGAACTTCCTGAACTCTG...........................................................................................................................................................................................................................................181.000.00--------------------------------------------1.00----------
..............CTACTGAATGAGCTGGCCTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.00----------------------------------------1.00--------------
................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCTGGGCAGTGGGGGTCGGGTCA............................................................................2711.001.00---------------------------------------1.00---------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGCGGTACGAGGCGGGCT............................2011.001.00--------------------1.00----------------------------------
.............................................................GGGGAAAGGTGCTGGCGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................191.000.00--------------------------------1.00----------------------
.......................................................................................................................................CCCACCTCGCTGGGT.................................................................................................................................................................................................................................................................................................................................................................................1530.330.33-0.33-----------------------------------------------------
......................................................................................................................................................................................................................................................................AGCTGGAACTTCCTG..................................................................................................................................................................................................................................................1580.120.12----------------------------------------------------0.12--

Antisense strand
AGTTGGTAAAGGCCCTACTGAATGAGCTGGCCTCCGTGAAGGTGAATGAGGTGAGCAAGCTGGGGAAAGGTGCTGGGGGAGGGAGTTCTGGGGTGAGCAGCAGGGTGGGAGCAGAAAAGCCTTGGCTCCCCTTAGCCCACCTCGCTGGGTGTCCACTAGGCAGGGGCTCAGGCATCCTCTCCCCTCCTCTGTGGGCGCTGCAGTCCGTAGACCTGGGTGCAAACCACAGCTCTGCCATTTACTGGCAGTGAGGTTTGCAGGGAGCTGGAACTTCCTGAACTTCAGCTTCCTCCTGTGTAAGATGGTGATGAGCAGTAAGAATGCGGTCACCTCTGGGACGGGTTCCATGAGATGCAGGCCATGCCCCTGACGGCACTCCCGCCCCTTCTGGTTTCCCTCTGGACTCAGGCAGAAGCCAGGGCTGGGCAGTGGGGGTCGGGTCACCCCTCATGCCCTGCTGCCTGCCCAGGTGGTGCGGTACGAGGCGGGCTACGTGGTATGCGCTGTGATCGCGGGCCT
......................................................................................................................................(((((......)))))((((((.(((.(((((...(((...)))..))))))))..))))))...................................................................................................................................................................................................................................................................................................................................
..................................................................................................................................131...............................................................197................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189782SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR343334SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577588(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040036(GSM532921)
G243N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR040023(GSM532908)
G575T. (cervix)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR040007(GSM532892)
G601T. (cervix)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577741(Rovira)
total RNA. (breast)
SRR040022(GSM532907)
G575N. (cervix)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR343335SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR343337SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040015(GSM532900)
G623T. (cervix)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
TAX577739(Rovira)
total RNA. (breast)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCGCATACCACGTAGCCC............ 2112.002.00-----------------1.00----1.00--------------------------------
....................................TGAAGGTGAATGAGGTTCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00-------------------------------------1.00-----------------
.............................................................................................TGAGCAGCAGGGTGGGATG....................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00--1.00----------------------------------------------------
.............................................................................................TGAGCAGCAGGGTGGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................ 181.000.00--1.00----------------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCTGGGCAGTGTAG..................................................................................... 181.000.00-----------------------------------------1.00-------------
..............................................................................................................................................................................................CACCCAGGTCTACGGACTGCAGCGCCCAC............................................................................................................................................................................................................................................................................................................ 2911.001.00----------1.00--------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCTCATGCCCTGCTGCCCG....................................................... 211.000.00------------------------------------------1.00------------
....................................................................................................................................................................................................ACCCAGGTCTACGGACTGCAGC............................................................................................................................................................................................................................................................................................................. 2211.001.00-----------------------------------1.00-------------------
..........................................................................................................................................................................................................................TGGCAGAGCTGTGGTTTGC.......................................................................................................................................................................................................................................................................................... 1911.001.00-----------------------------1.00-------------------------
...........................................................................................................................................................................................................................................................................................................................................TCTGGGACGGGTTCCATGCTGA...................................................................................................................................................................... 221.000.00------------1.00------------------------------------------
.............................................................................................................................................................................................................TGGTTTGCACCCAGGTCTACG..................................................................................................................................................................................................................................................................................................... 2111.001.00-----1.00-------------------------------------------------
........................................................................................................................................................................................CTACGGACTGCAGCGCCCACAGAGGA..................................................................................................................................................................................................................................................................................................................... 2611.001.00-----1.00-------------------------------------------------
.................................................................................GGAGTTCTGGGGTGAACAC................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-----------------------------------------------1.00-------
..............................................................................................GAGCAGCAGGGTGGGACT....................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00--1.00----------------------------------------------------
............................................................................GGGAGGGAGTTCTGGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-------------------------1.00-----------------------------
................................................................................................................................................................................................................................................................................................................................................................................GACGGCACTCCCGCCGGGC.................................................................................................................................... 191.000.00-------------------------------1.00-----------------------
...................................................................................................................................TTAGCCCACCTCGCTATA.................................................................................................................................................................................................................................................................................................................................................................................. 181.000.00---------------------------1.00---------------------------
..............................................................................................GAGCAGCAGGGTGGGACTCC..................................................................................................................................................................................................................................................................................................................................................................................................................... 201.000.00--1.00----------------------------------------------------
..........................................................................................................................................................................................................................GCAAACCACAGCTCTGGGA.......................................................................................................................................................................................................................................................................................... 191.000.00------------------------------------1.00------------------
.................................................................................................................................................................................................ACCCAGGTCTACGGACTGCAGCGCC............................................................................................................................................................................................................................................................................................................. 2511.001.00-----1.00-------------------------------------------------
.............................................................................................................................................................................................................................AACCACAGCTCTGCCAAAGT...................................................................................................................................................................................................................................................................................... 201.000.00---------1.00---------------------------------------------
..................................................................................................................................................................................CGCCCACAGAGGAGGGGAG.................................................................................................................................................................................................................................................................................................................................. 1911.001.00----------1.00--------------------------------------------
........................................................................................................................................................................................................GCACCCAGGTCTACGGACTG........................................................................................................................................................................................................................................................................................................... 2011.001.00------------------------------------------------1.00------
......................................................................................................................................GCCCACCTCGCTGGGCCCG.............................................................................................................................................................................................................................................................................................................................................................................. 191.000.00----1.00--------------------------------------------------
....................................................................................................................................................................................................GCACCCAGGTCTACGGACTGCAGC........................................................................................................................................................................................................................................................................................................... 2411.001.00---------------------------------1.00---------------------
...........................................................................................................................................................................................................................ATGGCAGAGCTGTGGTTTG......................................................................................................................................................................................................................................................................................... 1920.500.50-------------------------------------------------0.50-----
.....................................................................................................................................................................................................................................................................................ACAGGAGGAAGCTGAAGTT............................................................................................................................................................................................................................... 1920.500.50--------------------------------------------------0.50----
...............................................................................................................................................................................................................................GTAAATGGCAGAGCTGTGG..................................................................................................................................................................................................................................................................................... 1930.330.33-----0.33-------------------------------------------------
...............................................................................................................................................................GATGCCTGAGCCCCTGC....................................................................................................................................................................................................................................................................................................................................................... 1740.250.25---------------------------------------------------0.25---
.........................................................................................................................................................................GAGGGGAGAGGATGCCT............................................................................................................................................................................................................................................................................................................................................. 1740.250.25---------------0.25---------------------------------------
..................................................................................................................................................................AGGATGCCTGAGCCCC..................................................................................................................................................................................................................................................................................................................................................... 1680.250.25-----------------------------------------------------0.120.12