ID: uc002sly.2_intron_4_0_chr2_74733185_r
GENE: (3)
chr2:74733135-74733357-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(5)
BREAST 		(14)
CELL-LINE 		(2)
CERVIX 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(11)
SKIN 		(1)
UTERUS

Sense strand
ATTCTACCAGTCCCGAGGTTTGGACCGGGTCACCCAGCCCACTGGGGAAGGTATGTCCTTGGCCGCGGGACAGTAAAGACCCCAGAGCATTCTTCTTGCCCAGTTTTGCTCTCTGGGGAAAGAGGAGTATGGAATGTGTGCCACCAGCCACCTCACTACCCTATCTTTCTCAGAGCCAGCACTGAGCAACCTCGGCCTCCCCTTCAGCAGCTTTGACCACTCT
...............................................................................((((((((((..((........))...))))))..))))...((((((.((((...(((.((.....)).....)))....)))).))))))....................................................
.............................................................................78.............................................................................................173................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040011(GSM532896)
G529T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)		GSM532874(GSM532874)
G699T. (cervix)		GSM416733(GSM416733)
HEK293. (cell line)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........................................................................................................................................................TCACTACCCTATCTTTCTCAGT.................................................22116.0016.002.00---1.00-------1.00--1.00--1.001.00-1.001.00-1.001.00--1.00-1.001.001.00---1.00--
........................................................................................................................................................TCACTACCCTATCTTTCTCAG..................................................21116.0016.0014.00----2.00---------------------------------
...............................................................................................................TCTGGGGAAAGAGGAGTATGGA..........................................................................................2219.009.00-2.003.00-----2.00-------1.001.00---------------------
.......................................................................................................................................................CTCACTACCCTATCTTTCTCAGT.................................................2314.001.003.00--------------------------1.00-----------
..........................................................................................................................AGGAGTATGGAATGTGTGCCACCAGCCACC.......................................................................3013.003.00------2.00-------------1.00------------------
..................................................................................CAGAGCATTCTTCTTGTG...........................................................................................................................182.000.002.00--------------------------------------
...........................................................................................................................................................................AGAGCCAGCACTGAGCAACCTCGG............................2412.002.00-2.00-------------------------------------
..........................................................................................................................................................ACTACCCTATCTTTCTCAGAGC...............................................2212.002.00--1.00-----------------------1.00------------
.....................................................................................................................................................ACCTCACTACCCTATTA.........................................................172.000.00----2.00----------------------------------
..................................................................................CAGAGCATTCTTCTTGG............................................................................................................................171.000.001.00--------------------------------------
..................................................................................CAGAGCATTCTTCTTAGG...........................................................................................................................181.000.001.00--------------------------------------
.............................................................................................................................................................ACCCTATCTTTCTCAG..................................................1611.001.00-----------------------------1.00---------
......................................CCACTGGGGAAGGTATG........................................................................................................................................................................1711.001.00----------1.00----------------------------
......................................................................................................................................................CCTCACTACCCTATCTTTCTCAGT.................................................2411.001.001.00--------------------------------------
.......................................................................................................................AAGAGGAGTATGGAAAATT.....................................................................................191.000.00---1.00-----------------------------------
.................GTTTGGACCGGGTCACCCAGCCCACTGGGGAAGA............................................................................................................................................................................341.000.00-------------1.00-------------------------
..................................................................................................................GGGGAAAGAGGAGTATGGAATGT......................................................................................2311.001.00-----------------------1.00---------------
.TTCTACCAGTCCCGACG.............................................................................................................................................................................................................171.000.00--------------1.00------------------------
.......................................................................................................................................................CTCACTACCCTATCTTTCTCAG..................................................2211.001.001.00--------------------------------------
...............................................................................................................................................................................CCAGCACTGAGCAACCTCGGCCT.........................2311.001.00---1.00-----------------------------------
....TACCAGTCCCGAGGTTTG.........................................................................................................................................................................................................1811.001.00---1.00-----------------------------------
..................................................................................CAGAGCATTCTTCTTTGG...........................................................................................................................181.000.001.00--------------------------------------
...............................................................................................................TCTGGGGAAAGAGGAGTATGG...........................................................................................2111.001.00-1.00-------------------------------------
........................................................................................................................................................TCACTACCCTATCTTTCTCAGAG................................................2311.001.00--------------------------------------1.00
........................................................................................................................................................TCACTACCCTATCTTTCTCAGA.................................................2211.001.00---------------------------------1.00-----
..................................................................................CAGAGCATTCTTCTTTTG...........................................................................................................................181.000.001.00--------------------------------------
..........................................................................................................................................................ACTACCCTATCTTTCTCAGAG................................................2111.001.00-----------------------------------1.00---
......................................................................................................................................................CCTCACTACCCTATCTTTCTCAG..................................................2311.001.00-------------------------------------1.00-
.................................................................................................................TGGGGAAAGAGGAGTATG............................................................................................1811.001.00-----------1.00---------------------------

Antisense strand
ATTCTACCAGTCCCGAGGTTTGGACCGGGTCACCCAGCCCACTGGGGAAGGTATGTCCTTGGCCGCGGGACAGTAAAGACCCCAGAGCATTCTTCTTGCCCAGTTTTGCTCTCTGGGGAAAGAGGAGTATGGAATGTGTGCCACCAGCCACCTCACTACCCTATCTTTCTCAGAGCCAGCACTGAGCAACCTCGGCCTCCCCTTCAGCAGCTTTGACCACTCT
...............................................................................((((((((((..((........))...))))))..))))...((((((.((((...(((.((.....)).....)))....)))).))))))....................................................
.............................................................................78.............................................................................................173................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189784SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040011(GSM532896)
G529T. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)		GSM532874(GSM532874)
G699T. (cervix)		GSM416733(GSM416733)
HEK293. (cell line)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038854(GSM458537)
MM653. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...............................................................................AAGAAGAATGCTCTGGGG.............................................................................................................................. 1812.002.00---------2.00-----------------------------
........................................................................................................................................................................CTCAGAGCCAGCACTTCC..................................... 181.000.00-------1.00-------------------------------
..ACCTCGGGACTGGTAGA............................................................................................................................................................................................................ 1711.001.00----------------------------------1.00----
........................................................................................................................................TGTGCCACCAGCCACCTCACTAATT.............................................................. 251.000.00---1.00-----------------------------------
.........................................................................TAAAGACCCCAGAGCATTGC.................................................................................................................................. 201.000.00-------1.00-------------------------------