ID: uc002sje.1_intron_18_0_chr2_73828564_f.3p
GENE: ALMS1(19)
chr2:73829112-73829361+


(1)
BRAIN 		(11)
CELL-LINE 		(1)
HELA 		(2)
LIVER 		(1)
OTHER 		(2)
SKIN 		(1)
XRN.ip

Sense strand
TCTTTGATCCCTGCGGTTTCCAAGCTGCAGCTCTCCCCCATAGAGAGATGTCAGAGGATTCTTCAACGCTAGATACTTTCTCGGCATTTGAATCAGACTTCCCCAAACCTCTTGGGCAGGTGGTGTGTCTCCAGGCATATGGAGAGTAGATTGCATCATTAATCTGAGGCTGGGCATTTTCTCTTTTTTTTTTCTTTTAGGAATCGCTTCAGTTTCACAGACCTGACTTCATCTCCCGCTCTGGGGAGCG
......................................................................(((......((((((.......(((((....(((((.....)))))..(((((((((((((((......))))))......)))))))))..))))).)))))).....)))....................................................................
..................................................................67...................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
....................................................................................................................................................................................CTCTTTTTTTTTTCTTAAAG..................................................2013.000.00-1.00-8.004.00-------------
..................................................................................................................................................................................TTCTCTTTTTTTTTTCTTAAAG..................................................227.000.002.00--2.003.00-------------
.......................................................................GATACTTTCTCGGCAGGTA................................................................................................................................................................197.000.00-----7.00------------
...............................................................................................................................................................................ATTTTCTCTTTTTTTTTTCTTCCAG..................................................255.000.003.00--1.001.00-------------
..............................................................................................................................................................................CATTTTCTCTTTTTTTTTTAAG......................................................222.000.00---1.001.00-------------
...................................................................................................................................................................................TCTCTTTTTTTTTTCTTAAAG..................................................212.000.00---2.00--------------
.................................................................................................................................................................................TTTCTCTTTTTTTTTTCTTCCAG..................................................232.000.001.00-1.00---------------
....................................................................................................................................................................................CTCTTTTTTTTTTCTTGCAG..................................................202.000.00--2.00---------------
.................................................................................................................................................................................TTTCTCTTTTTTTTTTCTTTTAAG.................................................242.000.00-2.00----------------
....................................................................................................................................................................................CTCTTTTTTTTTTCTTTTCAAG................................................222.000.002.00-----------------
..................................................................................................................................................................................TTCTCTTTTTTTTTTCTTTTCAG.................................................232.000.00-2.00----------------
................................................................................................................................................................................TTTTCTCTTTTTTTTTTCTTTTGG..................................................242.000.00--1.00---1.00-----------
...............................................................................................................................................................................ATTTTCTCTTTTTTTTTTCCG......................................................212.000.00-1.00--1.00-------------
...............................................................................CTCGGCATTTGAATCTTT.........................................................................................................................................................181.000.00--------1.00---------
................................................................................................................................................................................TTTTCTCTTTTTTTTTTCTTTTATTG................................................261.000.001.00-----------------
........................................TAGAGAGATGTCAGATTGT...............................................................................................................................................................................................191.000.00------------1.00-----
...............................................................................................................................................................................ATTTTCTCTTTTTTTTTTCAAAG....................................................231.000.00----1.00-------------
...............................................................................................................................................................................ATTTTCTCTTTTTTTTTAATC......................................................211.000.00--1.00---------------
................................................................................................................................................................................TTTTCTCTTTTTTTTTTCTTTTAC..................................................241.000.00--1.00---------------
.................................................................................................................................................................................TTTCTCTTTTTTTTTTCTTGTTT..................................................231.000.00------1.00-----------
..............................................................................................................................................................................CATTTTCTCTTTTTTTTTTCTTTTTT..................................................261.000.001.00-----------------
................................................................................................................................................................................TTTTCTCTTTTTTTTTAACC......................................................201.000.00--1.00---------------
..................................................................................................................................................................................TTCTCTTTTTTTTTTCTTTACC..................................................221.000.00----1.00-------------
.................................................................................................................................................................................TTTCTCTTTTTTTTTTCTTTGT...................................................221.000.00--1.00---------------
...................................................................................................................................................................................TCTCTTTTTTTTTTCTTTTGAC.................................................221.000.00--1.00---------------
.................................................................................................................................................................................TTTCTCTTTTTTTTTTCCGG.....................................................201.000.00------1.00-----------
..................................................................................................................................................................................TTCTCTTTTTTTTTTCTTTCTTG.................................................231.000.001.00-----------------
..............................................................................................................................................................................CATTTTCTCTTTTTTTTTTCTTTTTTG.................................................271.000.001.00-----------------
..................................................................................................................................................................................TTCTCTTTTTTTTTTCTGCAG...................................................211.000.00--1.00---------------
..............................................................................................................................................................................CATTTTCTCTTTTTTTTTTCTTTTCTTG................................................281.000.00-1.00----------------
...................................................................................................................................................................................TCTCTTTTTTTTTTCTTTCAGC.................................................221.000.001.00-----------------
..................................................................................................................................................................................TTCTCTTTTTTTTTTCTTTTCGGT................................................241.000.00--1.00---------------
.................................................................................................................................................................................TTTCTCTTTTTTTTTTCTTTGTT..................................................231.000.00------1.00-----------
................................................................................................................................................................................TTTTCTCTTTTTTTTTACC.......................................................191.000.00-1.00----------------
................................................................................................................................................................................TTTTCTCTTTTTTTTTTCTTCCAG..................................................241.000.00---1.00--------------
................................................................................................................................................................................TTTTCTCTTTTTTTTTTCTTTTCTTC................................................261.000.001.00-----------------
..............................................................................................................................................................................CATTTTCTCTTTTTTTTTTCTTTTTTTG................................................281.000.001.00-----------------
...................................................................................................................................................................................TCTCTTTTTTTTTTCTTTCATG.................................................221.000.001.00-----------------
................................................................................................................................................................................TTTTCTCTTTTTTTTTTCTTTCAAG.................................................251.000.00-1.00----------------
.................................................................................................................................................................................TTTCTCTTTTTTTTTTCCAAG....................................................211.000.001.00-----------------
........................................................................................................................................................................GCTGGGCATTTTCTCTTTTTTTTTTCCTAG....................................................301.000.001.00-----------------
.................................................................................................................................................................................TTTCTCTTTTTTTTTTCTGGTA...................................................221.000.00--1.00---------------
...............................................................................................................................................................................ATTTTCTCTTTTTTTTTCCTG......................................................211.000.00-1.00----------------
..................................................................................................................................................................................TTCTCTTTTTTTTTTCTTAATG..................................................221.000.00----1.00-------------
...............................................................................................................................................................................ATTTTCTCTTTTTTTTTCATT......................................................211.000.00--------1.00---------
...................................................................................................................................................................................TCTCTTTTTTTTTTCTTTGGTT.................................................221.000.00--1.00---------------
..................................................................................................................................................................................TTCTCTTTTTTTTTTCTTAACG..................................................221.000.00-1.00----------------
..............................................................................................................................................................................CATTTTCTCTTTTTTTTTCG........................................................201.000.00----1.00-------------
............................................................................................................................................................................GGCATTTTCTCTTTTTGATC..........................................................201.000.00-----------1.00------
..............................................................................................................................................................................CATTTTCTCTTTTTTTTTTCTTTTGTG.................................................271.000.00-1.00----------------
...................................................................................................................................................................................TCTCTTTTTTTTTTCTTTTACAGG...............................................241.000.00--1.00---------------
....................................................................................................................................................................................CTCTTTTTTTTTTCTTTTAAACG...............................................231.000.00---1.00--------------
..................................................................................................................................................................................TTCTCTTTTTTTTTTCTAAAC...................................................211.000.00-1.00----------------
.....................................................................................................................................................................................TCTTTTTTTTTTCTTTTAGAAGG..............................................231.000.001.00-----------------
.................................................................................................................................................................................TTTCTCTTTTTTTTTTCTTAAAG..................................................231.000.00-1.00----------------
....................................................................................................................................................................................CTCTTTTTTTTTTCTTATTG..................................................201.000.00---1.00--------------
.................................................................................................................................................................................TTTCTCTTTTTTTTTTCTTTCG...................................................221.000.00-1.00----------------
...........................................................TCTTCAACGCTAGATCCAG............................................................................................................................................................................191.000.00---------1.00--------
..................................................................................................................................................................................TTCTCTTTTTTTTTTCTTTTATTTC...............................................251.000.00--1.00---------------
................................................................................................................................................................................TTTTCTCTTTTTTTTTTCTTTCCCC.................................................251.000.00--1.00---------------
..............................................................................................................................................................................CATTTTCTCTTTTTTTTTTCTTTTTTTT................................................281.000.001.00-----------------
..............................................................................................................................................................................CATTTTCTCTTTTTTTTTTAAA......................................................221.000.001.00-----------------
..................................................................................................................................................................................TTCTCTTTTTTTTTTCTTCAG...................................................211.000.00-1.00----------------
................................................................................................................................................................................TTTTCTCTTTTTTTTTATAG......................................................201.000.00-1.00----------------
...................................................................................................................................................................................TCTCTTTTTTTTTTCTTTCAGG.................................................221.000.00--1.00---------------
................................................................................................................................................................................TTTTCTCTTTTTTTTTTCTTGGTG..................................................241.000.00------1.00-----------
...............................................................................................................TTGGGCAGGTGGTGTGTGTTA......................................................................................................................211.000.00---------------1.00--
.................................................................................................................................................................................TTTCTCTTTTTTTTTTCTGGCT...................................................221.000.00------1.00-----------
...............................................................................................................................................................................ATTTTCTCTTTTTTTTTTCTTTAAG..................................................251.000.001.00-----------------
......................................................................AGATACTTTCTCGGCATTTGAATCAGAC........................................................................................................................................................2811.001.00-------------1.00----
..............................................................................................................................................................................CATTTTCTCTTTTTTTTCTTG.......................................................211.000.00----1.00-------------
.................................................................................................................................................................................TTTCTCTTTTTTTTTTCTTGAAG..................................................231.000.00-1.00----------------
................................................................................................................................................................................TTTTCTCTTTTTTTTTTCTTTTAG..................................................2420.500.50--0.50---------------

Antisense strand
TCTTTGATCCCTGCGGTTTCCAAGCTGCAGCTCTCCCCCATAGAGAGATGTCAGAGGATTCTTCAACGCTAGATACTTTCTCGGCATTTGAATCAGACTTCCCCAAACCTCTTGGGCAGGTGGTGTGTCTCCAGGCATATGGAGAGTAGATTGCATCATTAATCTGAGGCTGGGCATTTTCTCTTTTTTTTTTCTTTTAGGAATCGCTTCAGTTTCACAGACCTGACTTCATCTCCCGCTCTGGGGAGCG
......................................................................(((......((((((.......(((((....(((((.....)))))..(((((((((((((((......))))))......)))))))))..))))).)))))).....)))....................................................................
..................................................................67...................................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
.......................................................GGATTCTTCAACGCTAAA................................................................................................................................................................................. 183.000.00-------2.00------1.00---
........................................................................................................................................................................................................................ACAGACCTGACTTCATAA................ 181.000.00----------1.00-------
..................................................................................................................................................................................................................................CTTCATCTCCCGCTCCCT...... 181.000.00----------------1.00-
...................GAGAGCTGCAGCTTGG....................................................................................................................................................................................................................... 1650.200.20-----------------0.20