ID: uc002sjb.1_intron_2_0_chr2_73487676_r
GENE: (10)
chr2:73487626-73487917-


(3)
B-CELL
(5)
BRAIN
(12)
BREAST
(7)
CELL-LINE
(3)
CERVIX
(1)
HEART
(5)
LIVER
(1)
OTHER
(3)
SKIN
(3)
UTERUS

Sense strand
CCTGGGGGTCGGGGGTGCCGGCTGTGGGGTGCAGGGCCTGGCATCACTCGGTGAGTCTTTCCTTGGACTGGGGTGGTGGGTAGTGGGAAGCAGGCATGGGTGCAGTGCTGCCTTGTGAAATCCCACAGGGGCTTGGGGCTGCAGCCTGGGTGGTGGCAGGTGGCAGGGTGGTAGCCAGGGTGCTGGCTGCAGGGGTGACCTGGGGAGTGTGTCAGCAGGATCCCCCTTCTTCCTCTTCCTAGCGAGAAACTGCATGCGGCTGCAGGTCCTGGAGCTTGACCACGTGTCAGAG
..................................................................((.((((..((.....((.....))..(((....)))...))..))))))................................................................................................................................................................................
...............................................................64.......................................................121.........................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
TAX577743(Rovira)
total RNA. (breast)
TAX577580(Rovira)
total RNA. (breast)
TAX577739(Rovira)
total RNA. (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR189782TAX577745(Rovira)
total RNA. (breast)
SRR037935(GSM510473)
293cand3. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577740(Rovira)
total RNA. (breast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
TAX577590(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040018(GSM532903)
G701N. (cervix)
GSM532876(GSM532876)
G547T. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532883(GSM532883)
G871N. (cervix)
SRR189783GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037937(GSM510475)
293cand2. (cell line)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
..................................................................................................GGTGCAGTGCTGCCTCTCT...............................................................................................................................................................................19118.000.0043.0035.0011.009.007.002.00-2.00----2.001.001.00-1.002.001.00----------------1.00---------
..................................................................................................GGTGCAGTGCTGCCTCTC................................................................................................................................................................................1824.000.0014.00-4.003.00-1.00-------1.00---------------1.00---------------
........................................................................................................................TCCCACAGGGGCTTGCGGT.........................................................................................................................................................195.000.00-----1.001.00-2.00---------1.00--------------------------
................................AGGGCCTGGCATCACTCG..................................................................................................................................................................................................................................................1814.004.00-----------2.00-------2.00-------------------------
..................................................................................................GGTGCAGTGCTGCCTGGT................................................................................................................................................................................183.000.00------1.00---2.00----------------------------------
........................................................................................................................TCCCACAGGGGCTTGCGG..........................................................................................................................................................182.000.00------1.00---------------------------1.00----------
....................................................................TGGGGTGGTGGGTAGTAGGG............................................................................................................................................................................................................202.000.00-----1.00---1.00-----------------------------------
.....................................................................................................................................................................................GCTGGCTGCAGGGGTTTT.............................................................................................182.000.00---------------2.00-----------------------------
..........GGGGGTGCCGGCTGTAT.........................................................................................................................................................................................................................................................................171.000.00---------1.00-----------------------------------
.............................................................CTTGGACTGGGGTGGGCA.....................................................................................................................................................................................................................181.000.00-------------------------------------1.00-------
.........................................................................................................................................................TGGCAGGTGGCAGGGTGGCT.......................................................................................................................201.000.00----------------------------1.00----------------
....................................................................................................................................................................................................................................................AGAAACTGCATGCGGCTGCAGGTCCTGGAGC.................3111.001.00--------------------------------1.00------------
....................................................................TGGGGTGGTGGGTAGTGTATT...........................................................................................................................................................................................................211.000.00------1.00--------------------------------------
...................................................................CTGGGGTGGTGGGTATGAG..............................................................................................................................................................................................................191.000.00----------------------------------------1.00----
.............GGTGCCGGCTGTGGGTTAA....................................................................................................................................................................................................................................................................191.000.00---------------------------1.00-----------------
....................................................................TGGGGTGGTGGGTAGTGGGGTT..........................................................................................................................................................................................................221.000.00-----1.00---------------------------------------
..................................................................................................GGTGCAGTGCTGCCTCTGA...............................................................................................................................................................................191.000.00---------------------1.00-----------------------
.........CGGGGGTGCCGGCTGCC..........................................................................................................................................................................................................................................................................171.000.00-------------------------1.00-------------------
........................................................................................................................TCCCACAGGGGCTTGCGGA.........................................................................................................................................................191.000.00--------1.00------------------------------------
............................................................................................................................................................CAGGTGGCAGGGTGGTGTC.....................................................................................................................191.000.00--------------------------1.00------------------
.............................................................................................................................................................................................................................................................ATGCGGCTGCAGGTCCTGGAGC.................2211.001.00------------------------1.00--------------------
...................................................TGAGTCTTTCCTTGGACTGGGGTGGTGGGT...................................................................................................................................................................................................................3011.001.00--------------------------------------1.00------
..................................................................................................GGTGCAGTGCTGCCTGTCT...............................................................................................................................................................................191.000.001.00--------------------------------------------
..................................................................................................GGTGCAGTGCTGCCTATA................................................................................................................................................................................181.000.00-------1.00-------------------------------------
....................................................................TGGGGTGGTGGGTAGTGTGAG...........................................................................................................................................................................................................211.000.00------------------------------------1.00--------
................................................................................................................................................................................................................GTGTCAGCAGGATCCAAAT.................................................................191.000.00------------------------------1.00--------------
..................................................................................................GGTGCAGTGCTGCCTCTCG...............................................................................................................................................................................191.000.00-------1.00-------------------------------------
..................................................................................................GGTGCAGTGCTGCCTTTGT...............................................................................................................................................................................191.000.00--------------1.00------------------------------
...................................................................................................................................................................................................................................................GAGAAACTGCATGCGG.................................1611.001.00-------------------------------1.00-------------
..................................................................................................GGTGCAGTGCTGCCTTTCTC..............................................................................................................................................................................201.000.00----------------1.00----------------------------
..................................................................................................GGTGCAGTGCTGCCTGGG................................................................................................................................................................................181.000.00----1.00----------------------------------------
.....................................................................................GGAAGCAGGCATGGGCGTT............................................................................................................................................................................................191.000.00-----------------------1.00---------------------
.................................GGGCCTGGCATCACTCG..................................................................................................................................................................................................................................................1711.001.00---------------------------------1.00-----------
..................................................................................................GGTGCAGTGCTGCCTCTCC...............................................................................................................................................................................191.000.00-----------------------------------------1.00---
..................................................................................................GGTGCAGTGCTGCCTCTAT...............................................................................................................................................................................191.000.001.00--------------------------------------------
..................................................................................................GGTGCAGTGCTGCCTGGTT...............................................................................................................................................................................191.000.00----------1.00----------------------------------
.......................................................................................................................................................................................................................................................AACTGCATGCGGCTG..............................1530.330.33------------------------------------------0.33--
.............GGTGCCGGCTGTGGGG.......................................................................................................................................................................................................................................................................1630.330.33-------------------------------------------0.33-
...............................................................TGGACTGGGGTGGTGGG....................................................................................................................................................................................................................1730.330.33---------------------0.33-----------------------

Antisense strand
CCTGGGGGTCGGGGGTGCCGGCTGTGGGGTGCAGGGCCTGGCATCACTCGGTGAGTCTTTCCTTGGACTGGGGTGGTGGGTAGTGGGAAGCAGGCATGGGTGCAGTGCTGCCTTGTGAAATCCCACAGGGGCTTGGGGCTGCAGCCTGGGTGGTGGCAGGTGGCAGGGTGGTAGCCAGGGTGCTGGCTGCAGGGGTGACCTGGGGAGTGTGTCAGCAGGATCCCCCTTCTTCCTCTTCCTAGCGAGAAACTGCATGCGGCTGCAGGTCCTGGAGCTTGACCACGTGTCAGAG
..................................................................((.((((..((.....((.....))..(((....)))...))..))))))................................................................................................................................................................................
...............................................................64.......................................................121.........................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
TAX577743(Rovira)
total RNA. (breast)
TAX577580(Rovira)
total RNA. (breast)
TAX577739(Rovira)
total RNA. (breast)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR189782TAX577745(Rovira)
total RNA. (breast)
SRR037935(GSM510473)
293cand3. (cell line)
TAX577746(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577740(Rovira)
total RNA. (breast)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
TAX577590(Rovira)
total RNA. (breast)
TAX577738(Rovira)
total RNA. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR015361(GSM380326)
Memory B cells (MM55). (B cell)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040018(GSM532903)
G701N. (cervix)
GSM532876(GSM532876)
G547T. (cervix)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM532883(GSM532883)
G871N. (cervix)
SRR189783GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037937(GSM510475)
293cand2. (cell line)
SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577744(Rovira)
total RNA. (breast)
TAX577589(Rovira)
total RNA. (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
........................................................................................................................................GGCTGCAGCCTGGGTTCCT......................................................................................................................................... 191.000.00---------1.00-----------------------------------
........................................................................................................................................................................................................................................................................GGTCCTGGAGCTTGACGCAG........ 201.000.00--------------------1.00------------------------
...............................................................................................ATGGGTGCAGTGCTGTGAA.................................................................................................................................................................................. 191.000.00----------------------1.00----------------------
.......................................................................................................................................................................................................................CAGGATCCCCCTTCTGAT........................................................... 181.000.00---------------------------------------1.00-----
.................................................GGTGAGTCTTTCCTTAAAA................................................................................................................................................................................................................................ 191.000.00--------------------1.00------------------------
.....................................................................................................................................CCCAGGCTGCAGCCCCA.............................................................................................................................................. 1790.110.11--------------------------------------------0.11