ID: uc002sir.1_intron_0_0_chr2_73277029_r.3p
GENE: (2)
chr2:73276979-73277228-


(2)
BRAIN 		(9)
CELL-LINE 		(2)
LIVER 		(1)
OTHER 		(1)
SKIN

Sense strand
AACTCCTGCCCCAGTGTGTCTGGAAGGCAGGACATGGAATCAAAGATGATTCTCAAGATCGAATGTTGTTTGCCCTGTTGGATTTTAGATTTACTGAGGACCTGGTACTCCTTTTTTTTTTTTTTTCGTATTTCTCCCTTTTGGAAGATAAATATTCGTCTTGTGCCTGTCCCACCATTGTACCTTGTTTGATTTTACAGGCTCACAGCTGGAGGAAAATTTGCCTCAGGATGAATCACACCTTTGGGTC
.......................................................................................................(((((.........(((.(((((((.............))))))).)))..........)))))...................................................................................
.....................................................................................................102...................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189782SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189786SRR189787SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
..........................................................................................................ACTCCTTTTTTTTTTTTTACG...........................................................................................................................2112.000.00--3.005.00-4.00-------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTTACG.........................................................................................................................245.000.001.00-1.00--3.00-------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTGGG.........................................................................................................................234.000.003.001.00-----------------
............................................................................................................TCCTTTTTTTTTTTTTTTCGTTGGC.....................................................................................................................253.000.002.001.00-----------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTCGC.........................................................................................................................2313.002.003.00------------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTCCCGG.......................................................................................................................253.000.003.00------------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTCTGAG.......................................................................................................................253.000.003.00------------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTGGG..........................................................................................................................223.000.003.00------------------
.........................................................................................................TACTCCTTTTTTTTTTTTACG............................................................................................................................212.000.00-----1.001.00------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTGCTG.........................................................................................................................232.000.00-2.00-----------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTCG..........................................................................................................................2212.002.00--1.00---1.00------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTACG..........................................................................................................................232.000.001.00--1.00---------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTACG.........................................................................................................................232.000.00---2.00---------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTCCTGG.......................................................................................................................252.000.002.00------------------
.........................................................................................................TACTCCTTTTTTTTTTTTTACG...........................................................................................................................222.000.00---1.00-1.00-------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTTAATG........................................................................................................................252.000.00---1.001.00--------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTTCGGG........................................................................................................................2512.001.00-2.00-----------------
................................................................................................................TTTTTTTTTTTTTTCGTATGGG....................................................................................................................222.000.002.00------------------
........................................................................................................GTACTCCTTTTTTTTTTTTTTTG...........................................................................................................................232.000.00--2.00----------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTTATCT........................................................................................................................251.000.00----1.00--------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTATG.........................................................................................................................231.000.00----1.00--------------
................................................................................................................TTTTTTTTTTTTTTCGTATTCCCC..................................................................................................................241.000.00-1.00-----------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTATTT.........................................................................................................................241.000.00----1.00--------------
................................................................................................................TTTTTTTTTTTTTTCGTATTTGTG..................................................................................................................241.000.00---------1.00---------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTACGG........................................................................................................................241.000.001.00------------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTGGC.........................................................................................................................231.000.00-1.00-----------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTCGG.........................................................................................................................2311.002.001.00------------------
.........................................................................................................TACTCCTTTTTTTTTTTTTATTG..........................................................................................................................231.000.00----1.00--------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTTCG..........................................................................................................................2311.001.00--1.00----------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTTCGGGGG......................................................................................................................2711.001.001.00------------------
.........................................................................................................TACTCCTTTTTTTTTTCTCT.............................................................................................................................201.000.00----1.00--------------
..............................................................................................................CTTTTTTTTTTTTTTTCGTATTTG....................................................................................................................241.000.00----1.00--------------
..................................................................................................................TTTTTTTTTTTTCGTATTTGTT..................................................................................................................221.000.00----1.00--------------
..........................................................................................................ACTCCTTTTTTTTTTTTTCACT..........................................................................................................................221.000.00-----1.00-------------
............................................................................................................TCCTTTTTTTTTTTTTTTCGTGAC......................................................................................................................241.000.00-1.00-----------------
..........................................................................................................ACTCCTTTTTTTTTTTTTACAG..........................................................................................................................221.000.00--1.00----------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTAAAG.........................................................................................................................241.000.00--1.00----------------
.......................................................................................................GGTACTCCTTTTTTTACGC................................................................................................................................191.000.00-------1.00-----------
................................................................................................................TTTTTTTTTTTTTTCGTATTCC....................................................................................................................221.000.00-------1.00-----------
.........................................................................................................TACTCCTTTTTTTTTTTTTTTGGG.........................................................................................................................241.000.001.00------------------
..................................................................................................................TTTTTTTTTTTTCGTCGCT.....................................................................................................................191.000.00--------------1.00----
...............................................................................................................................................GAAGATAAATATTCGTCTTGTGCCT..................................................................................2511.001.00---------------1.00---
.........................................................................................................TACTCCTTTTTTTTTTTTTTGT...........................................................................................................................221.000.00----1.00--------------
..................................................................................................................TTTTTTTTTTTTCGTATGGG....................................................................................................................201.000.00----------1.00--------
...............................................................................................................TTTTTTTTTTTTTTTCGTCGGC.....................................................................................................................221.000.00-1.00-----------------
........................................................................................................GTACTCCTTTTTTTTTTTTTTCTT..........................................................................................................................241.000.00------1.00------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTTATT.........................................................................................................................241.000.00----1.00--------------
.................................................................................................................TTTTTTTTTTTTTCGTCGGC.....................................................................................................................201.000.001.00------------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTCGGGG.......................................................................................................................2511.002.001.00------------------
.........................................................................................................TACTCCTTTTTTTTTTTTCG.............................................................................................................................201.000.00---1.00---------------
..........................................................................................................ACTCCTTTTTTTTTTTTTCGAG..........................................................................................................................221.000.001.00------------------
..................TCTGGAAGGCAGGACACGG.....................................................................................................................................................................................................................191.000.00---------1.00---------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTGTTG........................................................................................................................241.000.00------1.00------------
.........................................................................................................TACTCCTTTTTTTTTTTTAAT............................................................................................................................211.000.00---1.00---------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTCGGG........................................................................................................................2411.002.001.00------------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTAATG........................................................................................................................241.000.00------1.00------------
................................................................................................................TTTTTTTTTTTTTTCGTCCGG.....................................................................................................................211.000.00------------1.00------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTGGGA........................................................................................................................241.000.001.00------------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTTAAGG........................................................................................................................251.000.00-1.00-----------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTTCGTGCT......................................................................................................................271.000.00-1.00-----------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTGTG..........................................................................................................................221.000.00--1.00----------------
..............................................................................................................CTTTTTTTTTTTTTTTCGTATTTTTAG.................................................................................................................271.000.001.00------------------
..........................................................................................................ACTCCTTTTTTTTTTTTTAGGG..........................................................................................................................221.000.001.00------------------
............................................................................................................TCCTTTTTTTTTTTTTTTCGTTTTG.....................................................................................................................251.000.00-1.00-----------------
............................................................................................................TCCTTTTTTTTTTTTTTTCGAGGG......................................................................................................................241.000.001.00------------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTGGCC.........................................................................................................................231.000.00-1.00-----------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTTCGGGG.......................................................................................................................2611.001.001.00------------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTCTAAT.......................................................................................................................251.000.00--1.00----------------
............................................................................GTTGGATTTTAGATTTACTGAGG.......................................................................................................................................................2311.001.00--------1.00----------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTCCCAG.......................................................................................................................251.000.001.00------------------
............................................................................................................TCCTTTTTTTTTTTTTTTCGAAC.......................................................................................................................231.000.00----1.00--------------
.................................................................................................................TTTTTTTTTTTTTCGTATCG.....................................................................................................................201.000.00-------1.00-----------
..................................................................................................................TTTTTTTTTTTTCGTCGG......................................................................................................................181.000.00-1.00-----------------
................................................................................................................................................................................................TTTTACAGGCTCACAACG........................................181.000.00-------1.00-----------
.........................................................................................................TACTCCTTTTTTTTTTTTTTTAAAT........................................................................................................................251.000.00--1.00----------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTCTTGG.......................................................................................................................251.000.001.00------------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTAAAT.........................................................................................................................241.000.00--1.00----------------
........................................................................................................................................................................................TTGTTTGATTTTACAGGCTCACAGCTGGAGG...................................3111.001.00--------1.00----------
...............................................................................................................TTTTTTTTTTTTTTTCGTATTCCCC..................................................................................................................251.000.001.00------------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTCGGG.........................................................................................................................241.000.001.00------------------
............................................................................................................TCCTTTTTTTTTTTTTTTCGGTTG......................................................................................................................241.000.00-1.00-----------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTAAGT........................................................................................................................241.000.00--1.00----------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTGCC..........................................................................................................................221.000.00-1.00-----------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTTCCTTT.......................................................................................................................251.000.00-1.00-----------------
..........................................................................................................ACTCCTTTTTTTTTTTTTATA...........................................................................................................................211.000.001.00------------------
................................................................................................................TTTTTTTTTTTTTTCGTATTTATT..................................................................................................................241.000.00-1.00-----------------
..........................................................................................................ACTCCTTTTTTTTTTTTTTGGC..........................................................................................................................221.000.001.00------------------
...........................................................................................................CTCCTTTTTTTTTTTTTTTCG..........................................................................................................................2130.670.670.67------------------
.............................................................................................................CCTTTTTTTTTTTTTTTCGTA........................................................................................................................2120.500.50---0.50---------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTTC...........................................................................................................................2240.500.50----0.50--------------
................TGTCTGGAAGGCAGGACATGG.....................................................................................................................................................................................................................2140.250.25----------------0.25--
.........................................................................................................TACTCCTTTTTTTTTTTTTTTCTTTC.......................................................................................................................2640.250.50-----0.25-------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTTCTTT........................................................................................................................2540.250.50-0.25-----------------
.........................................................................................................TACTCCTTTTTTTTTTTTTTTCTTGG.......................................................................................................................2640.250.500.25------------------
...............GTGTCTGGAAGGCAGGACA........................................................................................................................................................................................................................1950.200.20-----------------0.20-
.............................................................................................................CCTTTTTTTTTTTTTTTCGT.........................................................................................................................2060.170.17--0.17----------------
.............................................................................................................CCTTTTTTTTTTTTTTTCGTTGGC.....................................................................................................................2460.170.170.17------------------

Antisense strand
AACTCCTGCCCCAGTGTGTCTGGAAGGCAGGACATGGAATCAAAGATGATTCTCAAGATCGAATGTTGTTTGCCCTGTTGGATTTTAGATTTACTGAGGACCTGGTACTCCTTTTTTTTTTTTTTTCGTATTTCTCCCTTTTGGAAGATAAATATTCGTCTTGTGCCTGTCCCACCATTGTACCTTGTTTGATTTTACAGGCTCACAGCTGGAGGAAAATTTGCCTCAGGATGAATCACACCTTTGGGTC
.......................................................................................................(((((.........(((.(((((((.............))))))).)))..........)))))...................................................................................
.....................................................................................................102...................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189782SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189786SRR189787SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
................................................................................................................TTTTTTTTTTTTTTCGTTGT...................................................................................................................... 201.000.00-------------1.00-----
..............................................................................................................CTTTTTTTTTTTTTTTCGTAAT...................................................................................................................... 221.000.00-----------1.00-------
......................................................................................................AAAAAAAGGAGTACCA.................................................................................................................................... 1670.140.14------------------0.14