ID: uc002sfj.2_intron_5_0_chr2_69650850_r.5p
GENE: (2)
chr2:69658834-69659083-


(1)
AGO2.ip
(4)
B-CELL
(2)
BRAIN
(2)
BREAST
(21)
CELL-LINE
(1)
CERVIX
(3)
HEART
(1)
HELA
(3)
LIVER
(1)
OTHER
(7)
SKIN
(1)
XRN.ip

Sense strand
GTTTGTACAAAGACCACTTTTCCCACTACCTGCAGCCTTTTATCACCCAGGTAAAATTTCACCTCTTTTATAGCAGTTGTGTTTCAGAAACTGATGGAACTGTGCTAGGATTTTGTGGATCATAAAAGATGAGAATTTGTATATTTTCTATTTAGAAGCCTATAGATAGAATATAGGAAAAAAAGCTATATTTTTCTTATAGGCTTCTAAGTAGAAAATGTATTTGCAAGGATATTGTCCAATAGATCTA
........................................................................................................(((((.(((((((...)))))))...((((((......))))))..)))))...((((((.......)))))).........................................................................
.................................................................................................98..............................................................................178......................................................................
SizePerfect hitTotal NormPerfect NormSRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR189782SRR037943(GSM510481)
293DcrTN. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189786SRR189787SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR029125(GSM416754)
U2OS. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR037936(GSM510474)
293cand1. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040029(GSM532914)
G026T. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
GSM359192(GSM359192)
HepG2_3pM_6. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM359191(GSM359191)
HepG2_3pM_5. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
........................................................................................................................................................TAGAAGCCTATAGATAGAATAT............................................................................22117.0017.005.00---6.00-----1.00--------1.00----1.00-1.00-----1.00------------1.00----
............................................................................................................................................................................................TATTTTTCTTATAGGCTTCTAA........................................22113.0013.003.00-1.004.00-----1.00------------1.00--------1.00------1.00---------1.00-
.........................................................................................................................................................AGAAGCCTATAGATAGAATAT............................................................................2119.009.006.00--3.00----------------------------------------------
............................................................................................................................................................................................TATTTTTCTTATAGGCTTCTAT........................................2219.003.00-9.00------------------------------------------------
.............................................................................................................................................................................................ATTTTTCTTATAGGCTTCTAAG.......................................2217.007.00-----------1.001.002.00---------1.00----1.00------1.00--------------
........................................................................................................................................................TAGAAGCCTATAGATAGA................................................................................1815.005.005.00-------------------------------------------------
......................................................................................................TGCTAGGATTTTGTGTTT..................................................................................................................................184.000.00-------4.00------------------------------------------
.........................................................................................................................................................AGAAGCCTATAGATAGAATATA...........................................................................2214.004.00----------2.00----1.001.00---------------------------------
............................................................................................................................................................................................TATTTTTCTTATAGGCTTCTAAT.......................................2313.0013.00---------------1.001.00----------------------1.00----------
............................................................................................................................................................................................TATTTTTCTTATAGGCTTCTA.........................................2113.003.00---------1.00--------2.00-------------------------------
........................................................................................................................................................TAGAAGCCTATAGATTTTG...............................................................................193.000.00--3.00-----------------------------------------------
........................................................................................................................................................TAGAAGCCTATAGATAGAATA.............................................................................2112.002.00---------------------------1.00--------------1.00-------
............................................................................................................................................................................................TATTTTTCTTATAGGCTTCT..........................................2012.002.00-----------------2.00--------------------------------
............................................................................................................................................................................................TATTTTTCTTATAGGCTTCTATC.......................................2312.003.00-----2.00--------------------------------------------
.............................................................................................................................................................................................ATTTTTCTTATAGGCTTCCAAG.......................................222.000.00-----1.001.00-------------------------------------------
.............................................................................................................................................................................................ATTTTTCTTATAGGCTTCTAAGA......................................2312.007.00--------------------1.00------------1.00----------------
............................................................................................................................................................................................TATTTTTCTTATAGGCTTCTAAAT......................................2412.0013.00--------------2.00-----------------------------------
.............................................................................................................................................................................................ATTTTTCTTATAGGCTTCTATA.......................................222.000.00-----------2.00--------------------------------------
.............................................................................................................................................................................................ATTTTTCTTATAGGCTTCTAAGT......................................2311.001.00-----------------------------1.00--------------------
............................................................................................................................................................................................TATTTTTCTTATAGGCTCTAA.........................................211.000.00------1.00-------------------------------------------
...TGTACAAAGACCACTTTTCCCACTAC.............................................................................................................................................................................................................................2611.001.00--------------------------------------------1.00-----
............................................................................................................................................................................................TATTTTTCTTATAGGCTAA...........................................191.000.00-----1.00--------------------------------------------
........................................................................................................................................................TAGAAGCCTATAGATAGAATATTTT.........................................................................2511.0017.00------------------------------1.00-------------------
........................ACTACCTGCAGCCTTTTATCACC...........................................................................................................................................................................................................2311.001.00-----------------------------------------------1.00--
............................................................................................................................................................................................TATTTTTCTTATAGGCTTCCAAG.......................................231.000.00-----1.00--------------------------------------------
...........................................................................................................................................................................................ATATTTTTCTTATAGGCTTCTAAT.......................................241.000.00--1.00-----------------------------------------------
............................................................................................................................................................................................TATTTTTCTTATAGGCTTCCAA........................................221.000.00------1.00-------------------------------------------
........................................................................................................................................................TAGAAGCCTATAGATTCTG...............................................................................191.000.00---------1.00----------------------------------------
..................TTTCCCACTACCTGCAGCCTTTTATCAC............................................................................................................................................................................................................2811.001.00----------------------------------------1.00---------
............................................................................................................................................ATATTTTCTATTTAGAATAG..........................................................................................201.000.00--1.00-----------------------------------------------
...............................................................................................GGAACTGTGCTAGGATTTTGTGGATCAT...............................................................................................................................2811.001.00------------1.00-------------------------------------
..............................................................................................................................................................................................TTTTTCTTATAGGCTTCTAAG.......................................2111.001.00----------------------------------1.00---------------
....GTACAAAGACCACTTTTCCCACTACCTGCAG.......................................................................................................................................................................................................................3111.001.00-------------------------------------1.00------------
.......................................................ATTTCACCTCTTTTAACAG................................................................................................................................................................................191.000.00-------------------------------------------------1.00
........................................................................................................................................................TAGAAGCCTATAGATATTG...............................................................................191.000.00--1.00-----------------------------------------------
...........GACCACTTTTCCCACGAAT............................................................................................................................................................................................................................191.000.00-------------------------------------------1.00------
........................................................................GCAGTTGTGTTTCAGTTT................................................................................................................................................................181.000.00----------------------------------------------1.00---
........................................................................................................................................................TAGAAGCCTATAGATATT................................................................................181.000.00--1.00-----------------------------------------------
............ACCACTTTTCCCACTACCTG..........................................................................................................................................................................................................................2011.001.00--------1.00-----------------------------------------
...........GACCACTTTTCCCACTAAT............................................................................................................................................................................................................................191.000.00-------------------------1.00------------------------
.......................................................................................................................................................................................................TAGGCTTCTAAGTAGAAAATG..............................2111.001.00---------------------1.00----------------------------

Antisense strand
GTTTGTACAAAGACCACTTTTCCCACTACCTGCAGCCTTTTATCACCCAGGTAAAATTTCACCTCTTTTATAGCAGTTGTGTTTCAGAAACTGATGGAACTGTGCTAGGATTTTGTGGATCATAAAAGATGAGAATTTGTATATTTTCTATTTAGAAGCCTATAGATAGAATATAGGAAAAAAAGCTATATTTTTCTTATAGGCTTCTAAGTAGAAAATGTATTTGCAAGGATATTGTCCAATAGATCTA
........................................................................................................(((((.(((((((...)))))))...((((((......))))))..)))))...((((((.......)))))).........................................................................
.................................................................................................98..............................................................................178......................................................................
SizePerfect hitTotal NormPerfect NormSRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR189782SRR037943(GSM510481)
293DcrTN. (cell line)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR189786SRR189787SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR343334SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR029125(GSM416754)
U2OS. (cell line)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM416733(GSM416733)
HEK293. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR037936(GSM510474)
293cand1. (cell line)
SRR037935(GSM510473)
293cand3. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR040029(GSM532914)
G026T. (cervix)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
GSM359192(GSM359192)
HepG2_3pM_6. (cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM359191(GSM359191)
HepG2_3pM_5. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................................................................................................................................................AAAAAAGCTATATTTCAAC..................................................... 192.000.00--------2.00-----------------------------------------
.........................CTACCTGCAGCCTTTGGG............................................................................................................................................................................................................... 181.000.00------1.00-------------------------------------------
....................TCCCACTACCTGCAGGAT.................................................................................................................................................................................................................... 181.000.00-----------------------------------------1.00--------
.........................CTACCTGCAGCCTTTATA............................................................................................................................................................................................................... 181.000.00------------------------------------1.00-------------