ID: uc002sea.3_intron_3_0_chr2_68274448_r.5p
GENE: (1)
chr2:68279993-68280242-


(1)
AGO2.ip
(1)
B-CELL
(2)
BREAST
(5)
CELL-LINE
(1)
CERVIX
(2)
HEART
(1)
LIVER
(1)
OTHER
(5)
SKIN

Sense strand
GGGCAAGGAGTACCTATAGAACCCCGGAGGAGGGTGAGGAGCAGAGCTGGGTGAGTTCTTTTCTTCTTTGGAAATTTTAACATGTACAACTTTAGGCATGTTCTTTAACTTCTTTTGGCTCAGTTTATTCATCTGTGAGGTTTAGATGAACAAGTGCATGTGGAATGCTTAGAGTAGTGCCTGGCACATAATCAGTGCTATTCAAGAGTTTGCTGCTGATATCGTAGAGTCACTGCTTGATCCTGGGGTC
...............................................................................((((((((.....(((((.((..((..((....))..))..)))))))((((((((.......))))))))...)))))))).........................................................................................
..............................................................................79..........................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR343337SRR343336SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189785SRR189782SRR343335SRR189786SRR189783RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
...................................................................................GTACAACTTTAGGCATC......................................................................................................................................................1729.000.0029.00-------------------------
....................................................................................................................................................AACAAGTGCATGTGGTGGA...................................................................................1912.000.00-4.003.00-1.00-1.002.001.00-----------------
...................................................................................................................................................GAACAAGTGCATGTGGTG.....................................................................................1859.000.80-5.603.40-----------------------
...................................................................................................................................................GAACAAGTGCATGTGGTGGA...................................................................................2055.000.80-1.801.60-0.400.60--0.60-----------------
...................................................................................................................................................GAACAAGTGCATGTGGTGG....................................................................................1954.000.80-1.801.60-0.60---------------------
................................................................................................................................................................................................................................TAGAGTCACTGCTTGATCCTGGGGCCAG282.000.00---2.00----------------------
..................................................................................................................................ATCTGTGAGGTTTAGATGAACAA.................................................................................................2311.001.00----------------------1.00---
........................................................................................................................................................................................................TTCAAGAGTTTGCTGCTGATATCGT.........................2511.001.00---------------------1.00----
...........................AGGAGGGTGAGGAGCAGAGCTGGGTGAGCTC................................................................................................................................................................................................311.000.00-------------------1.00------
.GGCAAGGAGTACCTATAGAAC....................................................................................................................................................................................................................................2111.001.00----------1.00---------------
.................................................................................................................................................................................................AGTGCTATTCAAGAGTTTGCTGCTG................................2511.001.00------------1.00-------------
...................................................................................................................................................GAACAAGTGCATGTGGATGAT..................................................................................211.000.00-----1.00--------------------
.....................................................................................................TCTTTAACTTCTTTTTAG...................................................................................................................................181.000.00-------------1.00------------
.....AGGAGTACCTATAGAAC....................................................................................................................................................................................................................................1711.001.00--------------------1.00-----
...........................AGGAGGGTGAGGAGCAGAGCTGGGTG.....................................................................................................................................................................................................2611.001.00---1.00----------------------
...................................................................................................................................................................AATGCTTAGAGTAGTGCCTGGC.................................................................2211.001.00---1.00----------------------
...............................................................................................................................................................................................TCAGTGCTATTCAAGAGTTTGCTGCTG................................2711.001.00----------------1.00---------
...................................................................................................................................................GAACAAGTGCATGTGGAGGGT..................................................................................211.000.00-----1.00--------------------
....................ACCCCGGAGGAGGGTGAGGAGCA...............................................................................................................................................................................................................2311.001.00-----------------1.00--------
........................................................TCTTTTCTTCTTTGGCTAT...............................................................................................................................................................................191.000.00------------------------1.00-
...................................................................................................................................................GAACAAGTGCATGTGGATGCC..................................................................................211.000.00----1.00---------------------
.....AGGAGTACCTATAGAACCCCGGAGGAGGG........................................................................................................................................................................................................................2911.001.00--------------1.00-----------
.......................................AGCAGAGCTGGGTGAATAT................................................................................................................................................................................................191.000.00------------------1.00-------
....................................................................................................................................................................................................GCTATTCAAGAGTTTGCTGCTG................................2211.001.00-----------------------1.00--
.........................................................................................................................................................................................ACATAATCAGTGCTATTCAAGAGTTTGCTGCTG................................3311.001.00---------1.00----------------
......................................GAGCAGAGCTGGGTGAGTCAG...............................................................................................................................................................................................211.000.00---------------1.00----------
...................................................................................................................................................GAACAAGTGCATGTGG.......................................................................................1650.800.80-0.200.60-----------------------
..................................................................................................................................................TGAACAAGTGCATGTG........................................................................................1630.670.67-0.330.33-----------------------
...............ATAGAACCCCGGAGG............................................................................................................................................................................................................................1520.500.50-------------------------0.50
...................................................................................................................................................GAACAAGTGCATGTGGGGG....................................................................................1950.200.80-----0.20--------------------
...................................................................................................................................................GAACAAGTGCATGTGGCGGA...................................................................................2050.200.80-0.20------------------------

Antisense strand
GGGCAAGGAGTACCTATAGAACCCCGGAGGAGGGTGAGGAGCAGAGCTGGGTGAGTTCTTTTCTTCTTTGGAAATTTTAACATGTACAACTTTAGGCATGTTCTTTAACTTCTTTTGGCTCAGTTTATTCATCTGTGAGGTTTAGATGAACAAGTGCATGTGGAATGCTTAGAGTAGTGCCTGGCACATAATCAGTGCTATTCAAGAGTTTGCTGCTGATATCGTAGAGTCACTGCTTGATCCTGGGGTC
...............................................................................((((((((.....(((((.((..((..((....))..))..)))))))((((((((.......))))))))...)))))))).........................................................................................
..............................................................................79..........................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR343337SRR343336SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189785SRR189782SRR343335SRR189786SRR189783RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR343334SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
TAX577739(Rovira)
total RNA. (breast)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
.......................................................................AAATTTTAACATGTAAAG................................................................................................................................................................. 182.000.00------1.00----1.00--------------