ID: uc002sct.3_intron_5_0_chr2_64335514_r.5p
GENE: (1)
chr2:64371015-64371264-


(2)
B-CELL
(1)
BRAIN
(12)
BREAST
(12)
CELL-LINE
(12)
CERVIX
(3)
HEART
(3)
OTHER
(25)
SKIN
(1)
XRN.ip

Sense strand
CCTCGGGTCTCGGGGGCCGCTCTGGGATCCCGGCCACCAGCAATTGTCCGGTAAGTGTGACCGCGGGGCGCCGCGGGATGGATGGCGGCGGGGCCGCCGAGGGGCGCGGGGAGGGCGGGCGCGCAACTTCCTCGGCGGCTTCCCCGGCGGCCAGCAGCCGGCTCTCCCCGCCCGCCTGCGCGCCCCCGCTGCGGCGGGGAGCGGAGTTTGCGGCGCCTGCATCCCGCGCCCTGGCTCGAGGAAGCGCCTT
....................................................................................................((((.(((((((((((.(((((...........(((.(((.....))).))).)).))).))))))))))))).)).......((((((....))))))...................................................
....................................................................................................101................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
TAX577579(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
GSM532876(GSM532876)
G547T. (cervix)
SRR343334SRR040018(GSM532903)
G701N. (cervix)
GSM532889(GSM532889)
G576N. (cervix)
SRR040010(GSM532895)
G529N. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040011(GSM532896)
G529T. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR040009(GSM532894)
G727T. (cervix)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR040007(GSM532892)
G601T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR191474(GSM715584)
16genomic small RNA (size selected RNA from t. (breast)
SRR040012(GSM532897)
G648N. (cervix)
SRR040032(GSM532917)
G603N. (cervix)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
....................................................................................................................................................................................CGCCCCCGCTGCGGCGGG....................................................18112.0012.00---1.001.001.001.00-1.003.00---1.00-------------------1.00-----------1.00------------1.00-----------
....................................................................................................................................................................................CGCCCCCGCTGCGGCGG.....................................................1716.006.005.00-1.00-------------------------------------------------------------------
....................................................................................................................................................................................CGCCCCCGCTGCGGCGGGC...................................................1915.0012.00---1.00--1.00-1.00---------------------------------------------1.00--------1.00------
.....................................................................................................................................................................................GCCCCCGCTGCGGCGGGCG..................................................1914.002.00-2.00------------------------------------------------1.00---------1.00---------
......................................................................................................................................................................................CCCCCGCTGCGGCGGGCG..................................................1814.001.00--------1.00--1.00--1.00--1.00----------------------------------------------------
........................................................................................................................................................................................CCCGCTGCGGCGGGGA..................................................1613.003.002.00---------1.00-----------------------------------------------------------
.....................................................................................................................................................................................GCCCCCGCTGCGGCGGG....................................................1712.002.00-------------1.00----------------1.00---------------------------------------
...............................................CCGGTAAGTGTGACCGCGGGGCGCCGCGG..............................................................................................................................................................................2912.002.00------------------2.00---------------------------------------------------
...............GCCGCTCTGGGATCCAAA.........................................................................................................................................................................................................................182.000.00-------2.00--------------------------------------------------------------
........................................................................................................................................................................................CCCGCTGCGGCGGGGT..................................................162.000.001.001.00--------------------------------------------------------------------
......................................................................................................................................................................................CCCCCGCTGCGGCGGGCGTC................................................2012.001.00------------------------------------------------1.00--1.00------------------
....................................................................................................................................................................................CGCCCCCGCTGCGGCGGGCG..................................................2011.0012.001.00---------------------------------------------------------------------
.........................................................................................................GCGGGGAGGGCGGGCGGTT..............................................................................................................................191.000.00----------------------------------------1.00-----------------------------
.....................................................................................................................................................................................GCCCCCGCTGCGGCGGGCGTC................................................2111.002.00--------------------------------------------------------1.00-------------
................................................................GGGGCGCCGCGGGATCCCC.......................................................................................................................................................................191.000.00-------------------------1.00--------------------------------------------
.....GGTCTCGGGGGCCGCCCGC..................................................................................................................................................................................................................................191.000.00-----------------------------------------1.00----------------------------
...........................................................................................GGCCGCCGAGGGGCGC...............................................................................................................................................1621.001.00-----------------------0.50-----------------------------------------0.50----
......................................................................................................................................................................................CCCCCGCTGCGGCGGGGGG.................................................191.000.001.00---------------------------------------------------------------------
.....................................................................................................................................................................................GCCCCCGCTGCGGCGGC....................................................171.000.00--1.00-------------------------------------------------------------------
............................................................CCGCGGGGCGCCGCGGGA............................................................................................................................................................................1811.001.00-----1.00----------------------------------------------------------------
...................................................................................GGCGGCGGGGCCGCCG.......................................................................................................................................................1611.001.001.00---------------------------------------------------------------------
..........................................................................................................CGGGGAGGGCGGGCGCGCGGG...........................................................................................................................211.000.00---------------------------------------------------------1.00------------
...................................................................................GGCGGCGGGGCCGCCTCG.....................................................................................................................................................181.000.00-------------------------------------1.00--------------------------------
..................................CACCAGCAATTGTCCG........................................................................................................................................................................................................1611.001.00-------------------1.00--------------------------------------------------
......................................................................................................................................................................................CCCCCGCTGCGGCGGGC...................................................1711.001.001.00---------------------------------------------------------------------
.......................................................................................................................................................................................CCCCGCTGCGGCGGGCGTC................................................191.000.00----------------------------------------------------1.00-----------------
....................................................................................................................................................................................CGCCCCCGCTGCGGCGGGCGT.................................................2111.0012.00------1.00---------------------------------------------------------------
...................................................................................GGCGGCGGGGCCGCCGGG.....................................................................................................................................................1811.001.00----------1.00-----------------------------------------------------------
......................................................................................................................................................................................CCCCCGCTGCGGCGGGCGT.................................................1911.001.00-----------1.00----------------------------------------------------------
..................................................................................................................................................GCGGCCAGCAGCCGGTC.......................................................................................171.000.00----1.00-----------------------------------------------------------------
.................................................................................................................................................................................................GCGGGGAGCGGAGTTTGCG......................................1911.001.00-------------------------------------------1.00--------------------------
......................................................................................................................................................................................CCCCCGCTGCGGCGGG....................................................1611.001.00-------------------1.00--------------------------------------------------
......GTCTCGGGGGCCGCTCTGG.................................................................................................................................................................................................................................1911.001.00-------------------------------1.00--------------------------------------
...CGGGTCTCGGGGGCCGCTCTGGGA...............................................................................................................................................................................................................................2411.001.00-----1.00----------------------------------------------------------------
..........CGGGGGCCGCTCTGGGAACGG...........................................................................................................................................................................................................................211.000.00------------1.00---------------------------------------------------------
....................................................................................................................................................................................CGCCCCCGCTGCGGCGGCCG..................................................2011.006.00-1.00--------------------------------------------------------------------
.CTCGGGTCTCGGGGGCCGCT.....................................................................................................................................................................................................................................2011.001.00-----------------------------------1.00----------------------------------
..................................................GTAAGTGTGACCGCGGAA......................................................................................................................................................................................181.000.00-------------------------------------------------1.00--------------------
....................................................................................................................................................................................CGCCCCCGCTGCGGCGGT....................................................1811.006.00---1.00------------------------------------------------------------------
................................................CGGTAAGTGTGACCGCGGG.......................................................................................................................................................................................1911.001.00--------------------------------------------------------------1.00-------
....................................................................................................................................................................................CGCCCCCGCTGCGGCGGGCGGC................................................2211.0012.00-------------------------------------------------------------1.00--------
...................................................................................GGCGGCGGGGCCGCCTGG.....................................................................................................................................................181.000.00------------1.00---------------------------------------------------------
.............................................................CGCGGGGCGCCGCGGGAC...........................................................................................................................................................................1820.500.50------------------------0.50---------------------------------------------
.............................................................CGCGGGGCGCCGCGGGA............................................................................................................................................................................1720.500.50-0.50--------------------------------------------------------------------
.............................................................CGCGGGGCGCCGCGGGACCGC........................................................................................................................................................................2120.500.50------------------------0.50---------------------------------------------
..............................................................GCGGGGCGCCGCGGGA............................................................................................................................................................................1680.250.250.120.12--------------------------------------------------------------------
.............................................................CGCGGGGCGCCGCGGG.............................................................................................................................................................................1650.200.20------------------------0.20---------------------------------------------
..............................................................GCGGGGCGCCGCGGGACA..........................................................................................................................................................................1880.120.25-------------------------0.12--------------------------------------------

Antisense strand
CCTCGGGTCTCGGGGGCCGCTCTGGGATCCCGGCCACCAGCAATTGTCCGGTAAGTGTGACCGCGGGGCGCCGCGGGATGGATGGCGGCGGGGCCGCCGAGGGGCGCGGGGAGGGCGGGCGCGCAACTTCCTCGGCGGCTTCCCCGGCGGCCAGCAGCCGGCTCTCCCCGCCCGCCTGCGCGCCCCCGCTGCGGCGGGGAGCGGAGTTTGCGGCGCCTGCATCCCGCGCCCTGGCTCGAGGAAGCGCCTT
....................................................................................................((((.(((((((((((.(((((...........(((.(((.....))).))).)).))).))))))))))))).)).......((((((....))))))...................................................
....................................................................................................101................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
TAX577579(Rovira)
total RNA. (breast)
TAX577744(Rovira)
total RNA. (breast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577590(Rovira)
total RNA. (breast)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189784SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577738(Rovira)
total RNA. (breast)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
GSM532876(GSM532876)
G547T. (cervix)
SRR343334SRR040018(GSM532903)
G701N. (cervix)
GSM532889(GSM532889)
G576N. (cervix)
SRR040010(GSM532895)
G529N. (cervix)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR040011(GSM532896)
G529T. (cervix)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532871(GSM532871)
G652N. (cervix)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR040009(GSM532894)
G727T. (cervix)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR040007(GSM532892)
G601T. (cervix)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040039(GSM532924)
G531T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR191474(GSM715584)
16genomic small RNA (size selected RNA from t. (breast)
SRR040012(GSM532897)
G648N. (cervix)
SRR040032(GSM532917)
G603N. (cervix)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
TAX577589(Rovira)
total RNA. (breast)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR191582(GSM715692)
95genomic small RNA (size selected RNA from t. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
TAX577745(Rovira)
total RNA. (breast)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
.......................................................................................................................................................................................CCCCGCTGCGGCGGGAGG................................................. 186.000.00--1.00-------1.00-----1.001.00---2.00------------------------------------------------
............................................................................................................................................................................GCGGGGGCGCGCAGGCG............................................................. 1716.006.001.00---1.00----------2.00------------------1.00-----------------------------1.00-----
.......................................................................................................................................................................................CCCCGCTGCGGCGGGA................................................... 164.000.002.00---------------1.00------1.00----------------------------------------------
.....................................................................................CGGCGGGGCCGCCGAGGGG.................................................................................................................................................. 192.000.00--1.00---------------------------------------1.00---------------------------
............................................................................................................................................................................AGCGGGGGCGCGCAGGCG............................................................ 1812.002.00--------------------1.00------------------1.00------------------------------
...................................................................................................................................................................CTCCCCGCCCGCCTGCTT..................................................................... 181.000.00----------------------1.00-----------------------------------------------
.....................................................................................................GGGCGCGGGGAGGGCGGGTCCG............................................................................................................................... 221.000.00--------------------1.00-------------------------------------------------
.............................................................................................................................................................................GCCTGCGCGCCCCCGCCTA.......................................................... 191.000.00---------------------------1.00------------------------------------------
.....................................................................................CGGCGGGGCCGCCGAGGG................................................................................................................................................... 181.000.00--------------1.00-------------------------------------------------------
............................................................................................................GGGAGGGCGGGCGCGGGC............................................................................................................................ 181.000.00-----------------------------------------------------1.00----------------
.......................................................................................................................................................................................CCCCGCTGCGGCGGGGA.................................................. 171.000.00-1.00--------------------------------------------------------------------
.....................................................................................TCGGCGGCCCCGCCG...................................................................................................................................................... 1511.001.001.00---------------------------------------------------------------------
.................................................................................................................................................................CTCTCCCCGCCCGCCTGCGAGCA.................................................................. 231.000.00----------------------------------------------1.00-----------------------
..............................................................................................................................................................................CCCGCCGCAGCGGGGGCGCGCAGG.................................................... 2411.001.00-----------------------------------------------------------1.00----------
............................................................CCGCGGGGCGCCGCGGGG............................................................................................................................................................................ 181.000.00-------------------------------------------------------1.00--------------
............................................................CCGCGGGGCGCCGCGGGAC........................................................................................................................................................................... 191.000.00--------------------------------1.00-------------------------------------
..........................................................................................................................................................................CCCGCCTGCGCGCCCCA............................................................... 171.000.00----1.00-----------------------------------------------------------------
...........................................................................................................GGGGAGGGCGGGCGCGCCGC........................................................................................................................... 201.000.001.00---------------------------------------------------------------------
.......................................................................................GCGGGGCCGCCGAGGGGCG................................................................................................................................................ 191.000.00--------------------------1.00-------------------------------------------
............................................................................................................................................................................CGCCTGCGCGCCCCCGTCT........................................................... 191.000.00-----------------------------1.00----------------------------------------
..............................................................................................................................................................................CCTGCGCGCCCCCGCAG........................................................... 171.000.00----------------------------1.00-----------------------------------------
..........................................................................................................................................................................................CGCTGCGGCGGGGAGCTA.............................................. 181.000.00--------------------------------------------1.00-------------------------
............................................................................................................................................................................CGCCTGCGCGCCCCCGAC............................................................ 181.000.00------------------------------------1.00---------------------------------
......................................................................................................................................................................................CCCCCGCTGCGGCGGGGA.................................................. 181.000.001.00---------------------------------------------------------------------
................................................................................................CCGAGGGGCGCGGGGGGG........................................................................................................................................ 181.000.00-1.00--------------------------------------------------------------------
............................................................CCGCGGGGCGCCGCGCCGC........................................................................................................................................................................... 191.000.00---1.00------------------------------------------------------------------
.........................................................................................GGGGCCGCCGAGGGGCGC............................................................................................................................................... 181.000.00-------1.00--------------------------------------------------------------
..............................................................................................................................................................CGGCTCTCCCCGCCCAGCA......................................................................... 191.000.00-----------------------------------------------1.00----------------------
.....................................................................................CGGCGGGGCCGCCGAGGGGG................................................................................................................................................. 201.000.00----------------------1.00-----------------------------------------------
......................................CACTTACCGGACAATTGCT................................................................................................................................................................................................. 1911.001.00--------------------------------------1.00-------------------------------
.............................................................................................................................................................................CGGGGGCGCGCAGGC.............................................................. 1550.600.60------------------------------------------------------------------0.400.20--
............................................................................................................................................................................GGGGGCGCGCAGGCG............................................................... 1570.290.29--------------------------------------------------------------------0.140.14