| (1) AGO1.ip OTHER.mut | (1) B-CELL | (1) BRAIN | (3) BREAST | (9) CELL-LINE | (1) CERVIX | (2) HEART | (2) LIVER | (4) OTHER | (5) SKIN | (1) XRN.ip |
| TGATTCTCTGTCAGATGGGAAGATTGCTTTACCTGAAAAAAAATCAGGAGGTATGTGTATTCATTCACACATTCTCTTTCAATTTTATATTGTTTATTTATTTTGTATTAATGCTTAATATTTCTTTAGTTGACAATGCCTATTTCAAAGCTAGAACCAATATTTCCAGCTTAGTAAATACTTGACAGGAAAACTATGGTAATTTATAATAATTATTTCAAATATTTATTGCGTGTTATAACCATATGCC .......................................................................................(((((((.(((......((((((.....))))))......))).))))))).........(((((.(((.......))).))))).............................................................................. .................................................................................82................................................................................................180.................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189784 | SRR343334 | SRR343335 | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | GSM450604(GSM450604) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189782 | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | TAX577742(Rovira) total RNA. (breast) | SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin) | SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR039619(GSM531982) HBV(+) HCC Tissue Sample 1. (liver) | SRR040028(GSM532913) G026N. (cervix) | SRR330919(SRX091757) tissue: normal skindisease state: normal. (skin) | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR330912(SRX091750) tissue: normal skindisease state: normal. (skin) | SRR342899(SRX096795) small RNA seq of Left atrial tissue. (heart) | SRR330867(SRX091705) tissue: skin psoriatic involveddisease state:. (skin) | TAX577588(Rovira) total RNA. (breast) | SRR191554(GSM715664) 99genomic small RNA (size selected RNA from t. (breast) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | DRR000559(DRX000317) "THP-1 whole cell RNA, no treatment". (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................................................................CCAATATTTCCAGCTTTATG.......................................................................... | 20 | 48.00 | 0.00 | 33.00 | 11.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................CCAATATTTCCAGCTTTA............................................................................ | 18 | 7.00 | 0.00 | - | - | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................TATTCATTCACACATTCTCTTTCAATT...................................................................................................................................................................... | 27 | 1 | 4.00 | 4.00 | - | - | - | 2.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................CCAATATTTCCAGCTTTAGG.......................................................................... | 20 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........GTCAGATGGGAAGATTGCTT............................................................................................................................................................................................................................. | 20 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......TCTGTCAGATGGGAAGATTGCT.............................................................................................................................................................................................................................. | 22 | 1 | 2.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
| .................................TGAAAAAAAATCAGGAG........................................................................................................................................................................................................ | 17 | 5 | 1.60 | 1.60 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 | - | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 | 0.20 |
| ........................................AAATCAGGAGGTATGTGTATTCA........................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................TATTCATTCACACATTCTCTTTCAATC...................................................................................................................................................................... | 27 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................AACCAATATTTCCAGCTTAGT........................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................GGGAAGATTGCTTTACCTGAAAA................................................................................................................................................................................................................... | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......CTGTCAGATGGGAAGATTGCTTT............................................................................................................................................................................................................................ | 23 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................AGATTGCTTTACCTGAAAAAAAATCAGGAG........................................................................................................................................................................................................ | 30 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................GGAAGATTGCTTTACCTGA...................................................................................................................................................................................................................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................AATTTATAATAATTATTTCAAATATTTATTG................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................CAATATTTCCAGCTTTAT........................................................................... | 18 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................ATATTGTTTATTTATTTTCCT............................................................................................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................CTGAAAAAAAATCAGGAG........................................................................................................................................................................................................ | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................CAAAGCTAGAACCAAT......................................................................................... | 16 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - |
| ......TCTGTCAGATGGGAAGA................................................................................................................................................................................................................................... | 17 | 4 | 0.25 | 0.25 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.25 | - | - | - | - | - | - | - |
| .........GTCAGATGGGAAGATTGC............................................................................................................................................................................................................................... | 18 | 9 | 0.11 | 0.11 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.11 | - | - | - | - | - | - | - | - |
| TGATTCTCTGTCAGATGGGAAGATTGCTTTACCTGAAAAAAAATCAGGAGGTATGTGTATTCATTCACACATTCTCTTTCAATTTTATATTGTTTATTTATTTTGTATTAATGCTTAATATTTCTTTAGTTGACAATGCCTATTTCAAAGCTAGAACCAATATTTCCAGCTTAGTAAATACTTGACAGGAAAACTATGGTAATTTATAATAATTATTTCAAATATTTATTGCGTGTTATAACCATATGCC .......................................................................................(((((((.(((......((((((.....))))))......))).))))))).........(((((.(((.......))).))))).............................................................................. .................................................................................82................................................................................................180.................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189784 | SRR343334 | SRR343335 | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | GSM450604(GSM450604) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189782 | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR207114(GSM721076) "IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | TAX577742(Rovira) total RNA. (breast) | SRR330874(SRX091712) tissue: skin psoriatic involveddisease state:. (skin) | SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR039619(GSM531982) HBV(+) HCC Tissue Sample 1. (liver) | SRR040028(GSM532913) G026N. (cervix) | SRR330919(SRX091757) tissue: normal skindisease state: normal. (skin) | SRR342901(SRX096797) small RNA seq of Left atrial tissue. (heart) | SRR330912(SRX091750) tissue: normal skindisease state: normal. (skin) | SRR342899(SRX096795) small RNA seq of Left atrial tissue. (heart) | SRR330867(SRX091705) tissue: skin psoriatic involveddisease state:. (skin) | TAX577588(Rovira) total RNA. (breast) | SRR191554(GSM715664) 99genomic small RNA (size selected RNA from t. (breast) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | DRR000559(DRX000317) "THP-1 whole cell RNA, no treatment". (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................ACAATGCCTATTTCAGTGT................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................GCTTTACCTGAAAAAAGAAT............................................................................................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |